Impacts of alien ‘ecosystem engineers’ overwhelm interannual and seasonal shifts in rocky-shore community composition on Marcus Island,South Africa

The South African coastline has been invaded by numerous alien species. Rare pre-invasion (1980) and post-invasion datasets (2001 and 2012) exist for Marcus Island, a small land-tied island in Saldanha Bay, South Africa. These snapshot datasets of the island’s intertidal invertebrate community were complemented with monitoring across seasons, from 2014 to 2016. Invertebrate communities were compared among the summers of 1980, 2001, 2012, 2014, 2015 and 2016 to assess interannual differences, while invertebrates and algae were monitored quarter-annually to assess seasonal changes. In addition, the population dynamics of the alien mussel Mytilus galloprovincialis were monitored. Differences in invertebrate communities between consecutive summers were significant but much smaller than changes induced by the arrival of alien species. Invertebrate and seaweed communities differed among years and shore zones but not among seasons, whereas species diversity differed among years, seasons and shore zones, with zones having the strongest influence. The invasion by M. galloprovincialis, and ensuing spatial and temporal variability in its recruitment, emerged as the most important factor influencing community composition, overshadowing interannual and seasonal changes. This work highlights that the impacts of alien species can be distinguished from natural variability by combining long-term monitoring with surveys at finer temporal scales. This is an important step in extending our understanding of the impacts of marine alien species.     

Age and growth of redeye round herring Etrumeus whiteheadi off the South African coast

Ages of redeye round herring Etrumeus whiteheadi were estimated with associated errors and used to infer life-history information, such as age composition, age-at-maturity and instantaneous mortality rate. Samples were collected in November 2005 during a research survey aimed at estimating the biomass of spawning pelagic fish off South Africa’s west and south coasts. Replicate age estimates obtained from sagittal otoliths were collected with slight bias and relatively high precision. A von Bertalanffy model describing growth of the combined sexes, including juveniles, was L_t = 20.41(1 ? e^{?0.41(t ? 1.92)}). Kimura’s likelihood ratio test revealed no statistically significant differences between growth parameters of males and females. Results suggested that otolith length is a better predictor of age than otolith weight. Maturity estimates for E. whiteheadi were similar to those previously documented.     

Transdisciplinary co-operation for an ecosystem approach to fisheries: A case study from the South African sardine fishery

Integrative approaches that involve natural and social scientists are needed to manage fisheries, but these are difficult to achieve. The process of developing a prototype, knowledge-based, electronic decision support tool for the South African sardine Sardinops sagax fishery provided a platform for fostering collaboration and achieving active participation of many stakeholders. The aim of the decision support tool is to assist managers in evaluating how effectively an ecosystem approach to fisheries (EAF) has been implemented for this fishery. The collaborative process involved a series of meetings during which knowledge was elicited from fisheries scientists, social scientists, resource managers and fishing industry representatives. Conceptualisations of the different stakeholder perspectives were developed in terms of objectives and indicators following the hierarchical tree approach recommended by FAO. This paper describes the collaborative process. Hierarchies of objectives, indicators and data sets for the human dimension of an EAF in the South African sardine fishery are introduced. The value of a transdisciplinary approach towards an EAF in South Africa is discussed.     

Knowledge-based systems as decision support tools in an ecosystem approach to fisheries: Comparing a fuzzy-logic and a rule-based approach

In an ecosystem approach to fisheries (EAF), management must draw on information of widely different types, and information addressing various scales. Knowledge-based systems assist in the decision-making process by summarising this information in a logical, transparent and reproducible way. Both rule-based Boolean and fuzzy-logic models have been used successfully as knowledge-based decision support tools. This study compares two such systems relevant to fisheries management in an EAF developed for the southern Benguela. The first is a rule-based system for the prediction of anchovy recruitment and the second is a fuzzy-logic tool to monitor implementation of an EAF in the sardine fishery. We construct a fuzzy-logic counterpart to the rule-based model, and a rule-based counterpart to the fuzzy-logic model, compare their results, and include feedback from potential users of these two decision support tools in our evaluation of the two approaches. With respect to the model objectives, no method clearly outperformed the other. The advantages of numerically processing continuous variables, and interpreting the final output, as in fuzzy-logic models, can be weighed up against the advantages of using a few, qualitative, easy-to-understand categories as in rule-based models. The natural language used in rule-based implementations is easily understood by, and communicated among, users of these systems. Users unfamiliar with fuzzy-set theory must “trust” the logic of the model. Graphical visualization of intermediate and end results is an important advantage of any system. Applying the two approaches in parallel improved our understanding of the model as well as of the underlying problems. Even for complex problems, small knowledge-based systems such as the ones explored here are worth developing and using. Their strengths lie in (i) synthesis of the problem in a logical and transparent framework, (ii) helping scientists to deliberate how to apply their science to transdisciplinary issues that are not purely scientific, and (iii) representing vehicles for delivering state-of-the-art science to those who need to use it. Possible applications of this approach for ecosystems of the Humboldt Current are discussed.     

Spatial variation in meristic and morphometric characteristics of sardine Sardinops sagax around the coast of southern Africa

Spatial variability in phenotypic characteristics within a fish population may be used to infer the existence of multiple stocks, and knowledge of the population structure of exploited species is important for their sustainable management. In this study we investigated geographic variability in meristic (vertebral count) and morphometric (body shape) characteristics of sardine Sardinops sagax from three southern African regions: Namibia, the South African west coast, and the South African south coast. There were significant regional differences in vertebral counts, with Namibian fish tending to have more vertebrae than South African fish, but with no difference between sardine off the South African west and south coasts. Body shape was characterised using morphometric landmarks, and shape changes were investigated using geometric morphometrics, with influences on fish shape assessed using multivariate regressions. To remove the effects of allometry, the 22 shape variables (represented by Procrustes coordinates) were regressed against fish size (represented by centroid size). There was a significant allometric effect, which was removed by using the residuals of these regressions in further analyses. A multivariate multiple regression was applied to the 22 size-corrected shape variables and to three covariates: condition factor, stomach fullness and fat stage. The significant influence of these covariates was removed by using the residuals from this regression in a canonical variate analysis, where corrected shape variables were classified in relation to region, year and sex. The Mahalanobis distances from the canonical variate analysis differed significantly for most combinations of classifier variables, with clear separations among the three regions. Sardinops sagax off Namibia had thicker bodies and more contracted tail regions than South African fish, whereas S. sagax off the South African south coast had thinner bodies and smaller heads than those off the west coast. These results support the hypothesis of multiple sardine stocks around southern Africa.     

Use of large Acacia trees by the cavity dwelling Black-tailed Tree Rat in the Southern Kalahari

Recent extensive harvesting of large, often dead Acacia trees in arid savanna of southern Africa is cause for concern about the conservation status of the arid savanna and its animal community. We mapped vegetation and nests of the Black-tailed Tree Rat Thallomys nigricauda to assess the extent to which the rats depend on particular tree species and on the existence of dead, standing trees. The study was conducted in continuous Acacia woodland on the southern and eastern edge of the Kalahari, South Africa. Trees in which there were tree rat nests were compared with trees of similar size and vigour to identify the characteristics of nest sites. Spatial analysis of tree rat distribution was conducted using Ripley's-L function. We found that T. nigricauda was able to utilize all available tree species, as long as trees were large and old enough so that cavities were existing inside the stem. The spatial distribution of nest trees did not show clumping at the investigated scale, and we therefore reject the notion of the rats forming colonies when inhabiting continuous woodlands. The selection of a particular tree as a nest site was furthermore depending on the close proximity of the major food plant, Acacia mellifera. This may limit the choice of suitable nest sites, since A. mellifera was less likely to grow within a vegetation patch containing a large trees than in patches without large trees.     

Speckle filtering of Synthetic Aperture Radar images using filters with object-size-adapted windows

Speckle degrades the radiometric quality of a Synthetic Aperture Radar (SAR) image. Previous methods for speckle reduction have used a fixed-size window for filtering the entire image. This, however, may not be effective for the entire image, as land covers of different sizes require different filtering windows. In this paper, a novel method is proposed by which each pixel in the image is filtered with a window appropriate for the size of object within it. The real in-phase and the imaginary quadrature components of the SAR images determine the best window size and the pixels in the intensity image are filtered using their own optimal windows. The proposed method is presented for both single- and multi-polarized SAR images, and the results of several common filters that were modified are presented. This approach is applied to two RADARSAT-2 images: one over San Francisco, California, USA and the other over St. John’s, Newfoundland and Labrador, Canada, producing results that were similar to, or outperformed, comparable filters while retaining details and suppressing speckle effectively. While the method was successful for single-look intensity data, it offers great potential for multi-look and amplitude data as well.     

Simulated carbon and nitrogen flows of the planktonic food web during an upwelling relaxation period in St Helena Bay (southern Benguela ecosystem)

A vertically resolved ecosystem model is developed to simulate the dynamics of the pelagic food web in St Helena Bay during a representative period of relaxation after an upwelling event. The proposed model aims at coupling three biogeochemical cycles (carbon, nitrogen and silicon), using several recently developed concepts of the stoichiometric approach. A consequence of this approach is that important qualitative aspects are introduced, such as indicators of phytoplankton physiological state or variable food C:N ratios. For instance, the sedimentation and exudation rates for phytoplankton vary according to physiological state. An attempt is made to parameterize and simulate the diel cycles for vertical migration and feeding rhythms of large zooplankton, two important mesoscale processes that are thought to influence the overall dynamics of the huge phytoplankton blooms in the region.Observations of the Anchor Station Experiment 1987 (ASE’87) are used to assess the quality of the model. There is overall agreement between observations and the corresponding simulated results. The timing, the magnitude, and the vertical structure of the phytoplankton bloom are well reproduced. The balances for carbon and nitrogen flows and stocks compare well to the numerous estimates found from the literature for the southern Benguela region.On the basis of the model results, the origin of the new nutrients, the fate of the carbon fixed by phytoplankton, and the importance of the microheterotrophic pathways are discussed. It is concluded that sediments of the St Helena Bay and surrounding areas may play a crucial role in increasing the level of phytoplankton production. The results also suggest that exudation is the main process by which the carbon fixed by phytoplankton would have been lost, and that microheterotrophic pathways would have been intense during the experiment.