Identification of the interstellar cyanomethyl radical (CH2CN) in the molecular clouds TMC-1 and Sagittarius B2

We report the astronomical identification of the cyanomethyl radical, CH2CN, the heaviest nonlinear molecular radical to be identified in interstellar clouds. The complex fine and hyperfine structures of the lowest rotational transitions at about 20.12 and 40.24 GHz are resolved in TMC-1, where the abundance appears to be about 5 x 10(-9) relative to that of H2. This is significantly greater than the observed abundance of CH3CN (methyl cyanide) in TMC-1. In Sgr B2 the hyperfine structure is blended in the higher frequency transitions at 40, 80, and 100 GHz, although the spin-rotation doubling is clearly evident. Preliminary searches in other sources indicate that the distribution of CH2CN is similar to that for such carbon chain species as HC3N or C4H.     

Preservation of the shell matrix protein dermatopontin in 1500 year old land snail fossils from the Bonin islands

Organic molecules such as proteins can be preserved in certain fossils. The bulk properties of fossil proteins of both vertebrates and invertebrates have been studied for over half a century. Named proteins have so far been identified, however, only in vertebrate fossils, such as collagen from mammoth bones. Using immunological assays, we examined 1500 year old fossils of the extinct land snail Mandarina luhuana from the Bonin islands for the presence of dermatopontin, a molluscan shell matrix protein. First, we examined the shell microstructure and mineralogy of the fossil shells using scanning electron microscopy (SEM) and powder X-ray diffraction (XRD) in order to estimate the extent of diagenetic alteration. The results suggest that the original microstructure and mineralogy of the shells are preserved. Antiserum raised against the Type-1 dermatopontin fragment of the living land snail Euhadra brandtii showed significant immunological reactivity with the extracts from the fossil shells of M. luhuana. Immunological binding curves drawn for the shell extracts of extant M. aureola and the extinct M. luhuana confirmed the presence of dermatopontin in the fossil shells and provided an estimate that about 75–98% of the original dermatopontin was lost from the M. luhuana fossils. This is the first report of a named protein being identified in invertebrate fossils.     

Sedimentation of terrigenous red soils in coastal area adjacent to an estuary and coral reefs,the Okkubi River estuary,Okinawa Island,Japan

Sedimentation process of fine-grained terrigenous red soils was observed on the seafloor by coral reefs near an estuary using a paired mooring of turbidity meter and sediment trap or a mooring of sediment trap and current meter. Silty clays contained in the bottom calcareous sands were mainly resuspended and trapped in both surface and bottom layer traps, at noncatastrophic normal sedimentation periods. In addition, silty clays were supplied to this mooring site by inflowing river. Turbidity and the flux rate determined by sediment traps show certain relationship accompanied with the coefficient, which is changed by precipitation, current, and other conditions. Resuspension process caused by a typhoon was recorded as both core sequence of sediment trap and time-series data of bottom current. Maximum velocity of 49.5 cm/s was recorded from bottom currents resulting from the passing of attyphoon at the mooring site. A graded sand layer is interbedded in dark-gray, silty clay and considered to be a resuspended sediment resulting from the passing of the typhoon. Flux of the resuspended sediments by the typhoon was estimated from this core sequence and compared to the flux observed at the normal sedimentation.     

Decadal Variability of Subsurface Temperature in the Central North Pacific

Decadal variability of subsurface temperature in the North Pacific has been investigated. Two dominant regions were found; the central subarctic region (CSa) and the north-eastern subtropical region (NESt). In CSa, cooling (warming) of wintertime subsurface temperature corresponds to the large (small) temperature gradient and southward (northward) shift of subsurface temperature front, associated with the increase (decrease) of positive wind stress curl and the southward (northward) shift of curl τ zero line with 2 years delay. It is suggested that the relocation of subtropical-subarctic boundary plays an important role. In NESt, importance of heat flux through the sea surface and heat divergence in the Ekman layer is also discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

The effects of the reed,Phragmites australis (Trin.), on substratum grain-size distribution in a salt marsh

The effects of the reed,Phragmites australis (Trin.), growing in a brackish water lagoon, were studied in relation to the grain-size distribution of the substratum. At the salt marshes near the lagoon, the upper soils from the surface to a depth of 20 cm contained much silt-clay. These fine particles were found to be transferred from the river and fish ponds near the lagoon, and to be deposited when the tidal rhythm changed, that is, when the water current stopped. In addition, the fine particles, which were deposited on the bottom of the lagoon adjacent to the marshes, became resuspended as a result of wind-caused wave action, and then were transported and redeposited in the salt marshes at the flood tide. Since the reeds further reduced the water current caused by the waves and tide, the reeds were thought to promote redeposition of the resuspended matter. In other words, the reeds were considered to protect deposited and redeposited particles such as silt and clay from resuspension as a result of wave action by reducing the effects of waves and wind. These processes suggested that silt-clay will become abundant in the substratum of the salt marsh adjacent to the lagoon.     

Concentration and behavior of detrital mineral grains suspended in the water column of the open sea in the western Pacific

The pattern of distribution of detrital mineral grains in the water column was investigated at three stations in the western Pacific during July through August of 1979. The sedimentation of detrital mineral grains was also studied using piston cores from two sites adjacent to the three stations. The concentration of suspended detrital mineral grains in the subsurface waters becomes lower with increasing distance from the land, and shows a prominent peak in the intermediate zone of the water column. The sharp increase in water density and viscosity in the pycnocline in the intermediate zone decreases the settling velocity of grains, and may result in the accumulation of falling grains in the intermediate layer. Proportion of detrital mineral grains to organic remains in the sediment was more than two orders of magnitude larger than in the overlying water column, and reasons for this are briefly discussed.     

Convection induced by cooling at one side wall in two-dimensional non-rotating fluid —applicability to the deep Pacific circulation—

In recognition that similarity in the density balance leads to resemblance in circulation between the two-dimensional non-rotating and three-dimensional rotating systems which have similar density stratification, we investigate convection induced by cooling at one side wall and heating at the sea surface by using a two-dimensional non-rotating model as idealized representation for the deep Pacific circulation. In the model, various vertical profiles are taken for the side wall cooling, which are assumed to correspond to the density structure of the Anatarctic Circumpolar Current. In a small diffusivity range, two important features are found to be robust against change in the vertical profile of the side wall cooling. One is that the density stratification is horizontally almost uniform. The other is that the balance in the density equation between the vertical advection and the vertical diffusion holds in the interior. Consequently, the vertical density balance, together with the equation of continuity, determines the circulation pattern for the prescribed vertical profile of the side wall cooling. The multi-layered meridional flow, which is expected to exist in the deep Pacific, is shown to form for certain vertical profiles of the side wall cooling.     

Convergence,divergence and vertical velocity at a tidal front in Hiuchi-Nada,Japan

The detailed flow structure around a tical front in Hiuchi-Nada, Japan was observed with the use of ADCP (Acoustic Doppler Current Profiler). The surface convergence region is observed at the transition zone between vertically well mixed area and the stratified area. The surface divergence regions exist next to the surface convergence region. The strong downward current is estimated in the middle layer just below the surface convergence region. The maximum surface convergence and the maximum downward velocity in the middle layer are 1.0×10^–4 s^–1 and 0.12 cm s^–1, respectively.     

Seasonal Variability of Near-Surface Heat Budget of Selected Oceanic Areas in the North Tropical Indian Ocean

The results obtained from an Ocean General Circulation Model (OGCM), the Modular Ocean Model 2.2, forced with the National Center for Environmental Prediction/National Center for Atmospheric Research reanalysis data, and observational data have been utilized to document the climatological seasonal cycle of the upper ocean response in the Tropical Indian Ocean. We address the various roles played by the net surface heat flux and the local and remote ocean dynamics for the seasonal variation of near-surface heat budget in the Tropical Indian Ocean. The investigation is based in seven selected boxes in the Arabian Sea, Bay of Bengal and the Equatorial Indian Ocean. The changes of basin-wide heat budget of ocean process in the Arabian Sea and the Western Equatorial Indian Ocean show an annual cycle, whereas those in the Bay of Bengal and the Eastern Equatorial Indian Ocean show a semi-annual cycle. The time tendency of heat budget in the Arabian Sea depends on both the net surface heat flux and ocean dynamics while on the other hand, that in the Bay of Bengal depends mainly on the net surface flux. However, it has been found that the changes of heat budget are very different between western and eastern regional sea areas in the Arabian Sea and the Bay of Bengal, respectively. This difference depends on seasonal variations of the different local wind forcing and the different ocean dynamics associated with ocean eddies and Kelvin and Rossby waves in each regional sea areas. We also discuss the comparison and the connection for the seasonal variation of near-surface heat budget among their regional sea areas. This revised version was published online in July 2006 with corrections to the Cover Date.     

Simulation of Formation and Spreading of Salinity Minimum Associated with NPIW Using a High-Resolution Model

A series of numerical experiments were conducted with a high-resolution (eddy-permitting) North Pacific model to simulate the formation and spreading of the salinity minimum associated with the North Pacific Intermediate Water (NPIW). It was found that two factors are required to simulate a realistic configuration of the salinity minimum: a realistic wind stress field and small-scale disturbances. The NCEP reanalyzed wind stress data lead to better results than the Hellerman and Rosenstein wind stress data, due to the closer location of the simulated Oyashio and Kuroshio at the western boundary. Small-scale disturbances formed by relaxing computational diffusivity included in the advection scheme promote the large-scale isopycnal mixing between the Oyashio and Kuroshio waters, simulating a realistic configuration of the salinity minimum. A detailed analysis of the Oyashio water transport was carried out on the final three-year data of the experiment with reduced computational diffusivity. Simulated transport of the Kuroshio Extension in the intermediate layer is generally smaller than the observed value, while those of the Oyashio and the flow at the subarctic front are comparable to the observed levels. In the Oyashio-Kuroshio interfrontal zone the zonally integrated southward transport of the Oyashio water (140–155°E) is borne by the eddy activity, though the time-mean flow reveals the existence of a coastal Oyashio intrusion. In the eastern part (155°E–180°) the zonally integrated transport of the Oyashio water indicates a southward peak at the southern edge of the Kuroshio Extension, which corresponds to the branching of the recirculating flow from the Kuroshio Extension. This revised version was published online in July 2006 with corrections to the Cover Date.