Preservation of the shell matrix protein dermatopontin in 1500 year old land snail fossils from the Bonin islands

Organic molecules such as proteins can be preserved in certain fossils. The bulk properties of fossil proteins of both vertebrates and invertebrates have been studied for over half a century. Named proteins have so far been identified, however, only in vertebrate fossils, such as collagen from mammoth bones. Using immunological assays, we examined 1500 year old fossils of the extinct land snail Mandarina luhuana from the Bonin islands for the presence of dermatopontin, a molluscan shell matrix protein. First, we examined the shell microstructure and mineralogy of the fossil shells using scanning electron microscopy (SEM) and powder X-ray diffraction (XRD) in order to estimate the extent of diagenetic alteration. The results suggest that the original microstructure and mineralogy of the shells are preserved. Antiserum raised against the Type-1 dermatopontin fragment of the living land snail Euhadra brandtii showed significant immunological reactivity with the extracts from the fossil shells of M. luhuana. Immunological binding curves drawn for the shell extracts of extant M. aureola and the extinct M. luhuana confirmed the presence of dermatopontin in the fossil shells and provided an estimate that about 75–98% of the original dermatopontin was lost from the M. luhuana fossils. This is the first report of a named protein being identified in invertebrate fossils.     

Sedimentation of terrigenous red soils in coastal area adjacent to an estuary and coral reefs,the Okkubi River estuary,Okinawa Island,Japan

Sedimentation process of fine-grained terrigenous red soils was observed on the seafloor by coral reefs near an estuary using a paired mooring of turbidity meter and sediment trap or a mooring of sediment trap and current meter. Silty clays contained in the bottom calcareous sands were mainly resuspended and trapped in both surface and bottom layer traps, at noncatastrophic normal sedimentation periods. In addition, silty clays were supplied to this mooring site by inflowing river. Turbidity and the flux rate determined by sediment traps show certain relationship accompanied with the coefficient, which is changed by precipitation, current, and other conditions. Resuspension process caused by a typhoon was recorded as both core sequence of sediment trap and time-series data of bottom current. Maximum velocity of 49.5 cm/s was recorded from bottom currents resulting from the passing of attyphoon at the mooring site. A graded sand layer is interbedded in dark-gray, silty clay and considered to be a resuspended sediment resulting from the passing of the typhoon. Flux of the resuspended sediments by the typhoon was estimated from this core sequence and compared to the flux observed at the normal sedimentation.     

Long-term changes in the fish community structure from the Tsushima warm current region of the Japan/East Sea with an emphasis on the impacts of fishing and climate regime shift over the last four decades

Japanese fisheries production in the Japan/East Sea between 1958 and 2003 increased to their peak (1.76 million tons) in the late 1980s and decreased abruptly with the collapse of Japanese sardine. Catch results for 58 fisheries and various environmental time-series data sets and community indices, including mean trophic level (MTL) and Simpson’s diversity index (DI), were used to investigate the impacts of fishing and climate changes on the structure of the fish community in the Tsushima warm current (TWC) region of the Japan/East Sea. The long-term trend in fisheries production was largely dependent on the Japanese sardine that, as a single species, contributed up to 60% of the total production in the Japanese waters of the Japan/East Sea during the late 1980s. Excluding Japanese sardine, production of the small pelagic species was higher during 1960s and 1990s but lower during 1970s and 1980s. This variation pattern generally corresponds with the trend in water temperature, warmer before early 1960s and after 1990s but colder during 1970s and 1980s. The warm-water, large predatory fishes and cold water demersal species show opposite responses to the water temperature in the TWC region, indicating the significant impact of oceanic conditions on fisheries production of the Japan/East Sea. Declines in demersal fishes and invertebrates during 1970s and 1980s suggested some impact of fishing. MTL and DI show a similar variation pattern: higher during 1960s and 1990s but lower during 1970s and 1980s. In particular, the sharp decline during the 1980s resulted from the abundant sardine catches, suggesting that dominant species have a large effect on the structure of the fish community in the Japan/East Sea. Principal component analysis for 58 time-series data sets of fisheries catches suggested that the fish community varied on inter-annual to inter-decadal scales; the abrupt changes that occurred in the mid-1970s and late 1980s seemed to correspond closely with the climatic regime shifts in the North Pacific. These results strongly suggest that the structure of the fish community in the Japan/East Sea was largely affected by climatic and oceanic regime shifts rather than by fishing. There is no evidence showing “fishing down food webs” in the Japan/East Sea. However, in addition to the impacts of abrupt shifts that occurred in the late 1980s, the large predatory and demersal fishes seem to be facing stronger fishing pressure with the collapse of the Japanese sardine.     

Temperatures and Oxygen Isotopic Compositions of Hydrothermal Fluids for the Takatori Tungsten-copper Deposit, Japan

Abstract. Fluid inclusion and oxygen isotope studies are performed to obtain temperatures and oxygen isotopic compositions of hydrothermal fluids for the vein-type tungsten-copper deposit at Takatori in Ibaraki Prefecture, Japan. Temperatures of the hydrothermal fluids are calculated from fluid inclusion data. The calculation incorporates the effects of the salinity, gas concentration, and fluid pressure. The fluid temperatures range from 370 to 460C. For these calculations, this study obtains a density equation for H₂O-NaCl-CO₂ solution at the vapor-liquid two-phase boundary. Then the present study combines the obtained equation with the equation of state by Bowers and Helgeson (1983).
The fluid temperatures determined in this study are applied to the calculation of oxygen isotopic compositions of the hydrothermal fluids. The calculation of the oxygen isotopic compositions is based on the oxygen isotope analyses of vein quartz. The oxygen isotopic compositions of vein quartz range from +13.5 to +14.4 % relative to SMOW. Then, the oxygen isotopic compositions of the hydrothermal fluids in equilibrium with the vein quartz are calculated to be from +9.7 to +10.5 %. These δ¹⁸O_fluid values agree with those of magmatic fluids derived from the ilmenite-series granitic rock, which is related to the mineralization. Keywords: Takatori tungsten-copper deposit, fluid inclusion, oxygen isotope, vein quartz, H₂O-NaCl-CO₂ solution, density     

Oxygen isotope exchange rate between dissolved sulfate and water at hydrothermal temperatures

Oxygen isotope exchange rate between dissolved sulfate and water was experimentally determined at 100, 200 and 300°C. The isotope exchange rate is strongly dependent on temperature and pH of the solution. Combining the temperature and pH dependence of the reaction rate, the exchange reaction was estimated to be first-order with respect to sulfate. The logarithm of apparent rate constant of exchange reaction at a given temperature is a function of the pH calculated at the experimental temperatures. From the pH dependence of the apparent rate constant, it was deduced that the isotope exchange reaction between dissolved sulfate and water proceeds through collision between H₂SO⁰₄ and H₂O at low pH, and between HSO^?₄ and H₂O at intermediate pH. The isotope exchange rate obtained indicates that oxygen isotope geothermometry utilizing the studied isotope exchange is suitable for temperature estimation of geothermal reservoirs. The extrapolated half-life of this reaction to oceanic temperature is about 10⁹ years, implying that exchange between oceanic sulfate and water cannot control the oxygen isotope ratio of oceanic sulfates.     

Zinc-rich Pyrite from the TAG Active Mound, the TAG Hydrotherma Field, Mid-Atlantic Ridge

Abstract: Pyrite rich in Zn, up to 3.1 wt%, was found in the TAG active mound of the TAG hydrothermal field, the slow-spreading Mid-Atlantic Ridge at 26°08'N and 44°49'W. The Zn-rich pyrite is characterized by an optical homogeneity, a homogeneous distribution of Zn in the back-scattered electron images, both at a magnification of about 500, a negative correlation between Fe and Zn contents of the pyrite and a rather small unit cell edge (a₀ = 5.4117 ± 0.0008Å), strongly indicating that the detected Zn is present in the pyrite in solid solution. Such Zn concentrations are observed exclusively in dendritic pyrite, suggesting that the Znrich pyrite grew from hydrothermal fluids of a high degree of supersaturation due to quenching on the seafloor.     

Oxygen isotope fractionation factors between anhydrite and water from 100 to 550°C

Oxygen isotope exchange between anhydrite and water was studied from 100 to 550°C, using the partial equilibrium method. The exchange rate was extremely low in NaCl solution. In the lower-temperature range, acid solutions were used to produce sufficient reaction to determine the oxygen isotope fractionation factors. The fractionation factors obtained in the present study are definitely different from those given by Lloyd [8]. They are similar to those for the HSO₄^?-water system studied by Mizutani and Rafter [19], and are consistently 2‰ higher than those of the barite-water system by Kusakabe and Robinson [5]. The temperature dependence of the oxygen isotope fractionation factors was calculated by the least squares method in which the weight was taken to be inversely proportional to the experimental error. The fractionation is given by:10³lnαanhydrite-water=3.21×(10³/T)²?4.72Available δ¹⁸O values of natural anhydrite were used to test the validity of this expression. It is shown that this newly revised geothermometer can be successfully applied to natural hydrothermal anhydrite.     

Vertical double silicate maxima in the sea-ice reduction region of the western Arctic Ocean: Implications for an enhanced biological pump due to sea-ice reduction

The R/V Mirai conducted hydrographic surveys in the western Arctic Ocean during summer 2004 (Mirai04) over wide east-west ranges from Alaska to eastern Siberia, where sea-ice cover has been greatly reduced in recent summers. The obtained data reveal differences in silicate profiles between shelf slope areas east and west of the Chukchi Plateau, the ridge that divides the Canada Basin into the Alaskan and east Siberian sides. East of the plateau, a single silicate maximum was found in a layer of Pacific-origin winter water, as examined in many previous studies. In contrast, west of the plateau, we found vertical double silicate maxima, which are reported for the first time in this study. The shallower silicate maximum corresponded to an N** minimum, signaling denitrification at the shelf bottom. This suggests that the shallower silicate maximum was caused by the spreading of shelf water. In contrast, the deeper silicate maximum corresponded to an oxygen minimum and a maximum silicate/phosphate ratio (Si/P), suggesting that this deeper maximum resulted from the decomposition of opal-shelled organisms. We also compared a silicate profile from Mirai04 to aprofile from the Arctic Ocean Section 94 (AOS94) expedition of 1994, a heavy ice year. The results suggest that sea-ice loss has enhanced biological activities, likely resulting in the appearance of the deeper silicate maximum.