Effects of organic enrichment on nematode assemblages in a microcosm experiment

Marine nematodes from subtidal tropical sediments of Cienfuegos Bay were subjected to organic enrichment in a microcosm experiment for 32 days. Nematode abundance and diversity decreased, and the taxonomic and trophic structure was altered. The results suggested that the nematodes were not food limited in the microcosms or in their natural environment. Chemical stressors such as ammonia and hydrogen sulfide derived from reduced conditions in sediments may be important factors affecting the assemblages. Hypoxic conditions occurred in all experimental units, as well as in the field, suggesting a nematode assemblage adapted to naturally enriched sediments. However, tolerant species showed a grade of sensitivity to reduced conditions. In agreement with the model by Pearson and Rosenberg (1978), we predict that further organic enrichment in sediments from Cienfuegos Bay may cause a phase shift into a strongly depleted benthic fauna and reduced conditions in water and sediments.     

Diversity patterns of free‐living marine nematodes in the southwest continental shelf off Bay of Bengal and their link to abiotic variables

Marine sediments in continental shelf ecosystems harbor a rich biodiversity of benthic communities. In this study, the spatial and temporal diversity and community assemblages of free‐living marine nematodes were studied by sampling at six depths and over 3 years from the southwest continental shelf off Bay of Bengal, one of the least explored tropical shelf ecosystems. The dominant marine nematode species were related with abiotic variables as part of this study. The effects of sediment granulometry generally decreased with increasing depth and the highest nematode density and species diversity were recorded on coarse sand (shallower depths). Multivariate analysis of the nematode community data showed that community structure differed significantly among depths as well as among years. Statistical analyses showed significant correlations between the nematode community and abiotic variables. Sediment texture, organic matter, water pressure and depth profile were crucial factors for determining diversity, vertical profile and feeding types of the nematode community. Other environmental factors, including anthropogenic pressure, did not have an effect on nematode diversity except for the presence of some tolerant species (Metachromadora spp., Sabatieria spp. and Siplophorella sp.). This study represents a baseline of knowledge of free‐living marine nematode communities that can be used in the future to compare nematode assemblages from temperate shelf ecosystems.     

Seasonal variability in free-living marine nematode community structure in a sandy beach of the Taiping Bay of Qingdao, China

Nematode assemblage composition, trophic structure and biodiversity were followed over an annual cycle in a sandy beach of the Taiping Bay of Qingdao, China. Nematode assemblage in the sandy beach maintained a high genus diversity （75 genera）. Mlero- laimus and Bathylaimus were the dominant genus of the nematode assemblage, accounting for 66% of the total nematode abundance. The nematodes＇ dominant trophic structure changed seasonally as a response to the seasonal changes in food quality. Epigrowth-feeder nematodes （2A） were the dominant trophic groups in the trophic structure with the highest abundance in spring because of phytoplankton bloom, while the feeding type （ 1 B） showed higher abundance in summer that was due to the increasing of sediment detritus after spring bloom. Furthermore, species diversity and evenness calculated on nematodes identified to the genus level displayed significant temporal changes, which was also reflected by the index of trophic diversity. According to the cluster analysis, the nematode community structure of the whole year was clearly separated into two periods （A and B）. Biota-Envlron- ment matching （BIOENV） results showed that seawater temperature, sediment Chl a and grain size were responsible for the nema- tode community structure variation in spring and summer period （Period A）. However, seawater/interstitial water temperature, interstitial water dissolved oxygen concentration,interstitial water salinity, and sediment Ph a a were more important in constructing the autumn and winter period （Period B） nematode community structure.     

Deep-sea nematode assemblage has not recovered 26 years after experimental mining of polymetallic nodules (Clarion-Clipperton Fracture Zone, Tropical Eastern Pacific)

We investigated nematode assemblages inhabiting the 26-year-old track created by experimental deep-sea mining of polymetallic nodules, and two adjacent, undisturbed sites, one with nodules and one without nodules. The aim was to compare density, assemblage structure, and diversity indices in order to assess the process of recovery of the nematode assemblage inhabiting the disturbed site. This experimental dredging was conducted in 1978 by the Ocean Minerals Company (USA) in the area of a French mining claim in the Clarion-Clipperton Fracture Zone (Tropical Eastern Pacific) at a depth of about 5000 m. The nematode assemblage had not returned its initial state 26 years after the experimental dredging: the total nematode density and biomass within the dredging track were significantly lower than outside the track; the biodiversity indices showed significantly lower nematode diversity within the track; and the structure of the nematode assemblage within the track differed significantly from those in the two undisturbed sites outside the track. However, there were no significant differences in the mean body volumes of adult nematodes and adult-juvenile ratios between the track and reference sites. Parameters such as the rate of sediment restoration (which depends on local hydrological conditions) and the degree and character of the disturbance appeared to be of considerable importance for the recovery rate of the deep-sea nematode assemblages and their ability to recolonize disturbed areas. The rates of recolonization and recovery may vary widely in different deep-sea regions.     

Spatial and temporal variation in subtidal molluscan diversity amongst temperate estuarine habitats

Effective management of marine ecosystems is enhanced when detailed information on biodiversity is available. Key information to underpin management actions and conservation planning includes relationships between species assemblages and environmental gradients, and information on species distributions. We conducted a subtidal biodiversity assessment of surface‐dwelling subtidal molluscs in eight a priori defined habitat types using underwater visual censuses to quantitatively explore relationships between molluscan assemblages, and their correlation with benthic habitats and abiotic variables. In addition, variations in diversity were examined for two key habitat types (areas dominated by Dendronephthya australis and by filter feeders) over a period of 15 months to examine temporal change. We found that molluscs form distinct assemblages within subtidal habitats, but that assemblages within key habitats show inherent temporal variability. Regional (gamma) diversity of molluscs was found to result from a combination of: (i) within habitat alpha diversity, which increased with habitat complexity; (ii) between habitat beta diversity, with significant differences in molluscan assemblages amongst habitats with differing benthic growth, substrate type, and depth; and (iii) temporal beta diversity, with significant changes detected in molluscan assemblages over time. The results demonstrate how habitats and abiotic variables (principally depth and substrate type) combine to contribute to molluscan biodiversity in temperate estuaries, and illustrate the value of these factors as surrogates for surface‐dwelling subtidal molluscs in conservation planning.     

The distribution of meiofauna on back‐reef sandy platforms in the Maldives (Indian Ocean)

The Maldivian archipelago comprises some of the most characteristic and significant world atoll systems, but the meiobenthic assemblages of these islands continue to be largely unknown. To investigate variations in meiofaunal spatial distribution and biodiversity in back‐reef platforms, three transects were studied, two at Felidhoo (the north and east sides) and one at South Malé. The sedimentological features of the samples obtained were also analyzed to further current knowledge on the relationships that exist between sediments and meiofauna. Our results reveal that the meiofaunal assemblage at these locations is well diversified and includes 20 major taxa. Nematodes and copepods are dominant, together forming 68% of the total meiofauna, followed by platyhelminthes, polychaetes and ostracods. The nematode assemblage is very rich and composed of 34 families and 123 genera – 96 of which (78%) set new records for the Maldives. The structures of the meiofaunal and nematode assemblages are relatively similar on the ‘large‐scale’ level (i.e. when the different platforms are compared) and reveal a low β‐diversity. However, significant dissimilarities were detected within each platform, emphasizing that such ‘small‐scale’ differences are the main factors determining the structure of the meiofauna and, in particular, the nematode assemblages. Although significant differences were not detected between the transects, greater levels of dissimilarity were recognized at North Felidhoo. Here, the building of inclined deposit layers plays a significant role in increasing the heterogeneity of the platform habitats and sediments, confirming the great importance of sediment granulometry as an environmental variable. Indeed, a close relationship is observed between meiofauna (especially for the nematodes) and grain size, which appears to control the structure, diversity and trophic composition of the Maldivian meiofauna assemblages, thus highlighting the high biodiversity existing in the medium‐coarse sands.     

Functional diversity of nematode communities in the southwestern North Sea

A range of biological traits of nematode species were combined to identify patterns in the functional composition of their assemblages collected at 19 soft-bottom stations in the southwestern North Sea with the primary aim to determine which environmental variables control communities. We used 19 categories of five biological traits thought or known to represent an important ecological function. These were related to buccal morphology, tail shape, body size, body shape and life history strategy. Data on trait membership was provided by biological information on species and genera. A total of 79 different trait combinations were recorded. Results from correlation analyses revealed several significant relationships between traits. Some trait combinations were shared by different species and genera, and the ratio of realised versus total number of possible trait combinations of < 1 suggested that some trait combinations were not represented by the nematode fauna from this region. The functional composition of nematodes was strongly linked to median particle diameter and silt content of the sediment and water depth. The approach adopted and our attempts at defining and analysing functional attributes of nematode communities raised a number of conceptual and methodological issues which are discussed.     

Composition, structural characteristics and temporal patterns of fish assemblages in non-tidal Mediterranean lagoons: A case study

The importance of transitional water ecosystems as nursery habitats and feeding grounds for fish species is well-known. Detailed studies of colonization patterns of fish guilds in response to biotic and abiotic drivers are however unevenly distributed among ecosystem types. We address here the temporal variability of fish assemblages in small non-tidal lagoons in the Mediterranean basin. The study was carried out at the Acquatina lagoon (Lecce, Italy) where four stations, situated in two habitat types along a confinement gradient, were sampled twice per month for one year with fyke nets. Forty-five taxa ranging across 20 families were collected, with the most abundant species, Atherina boyeri, accounting for more than 95% of total abundance. Pooling all species together (excluding sand smelt), the structural features of the assemblage, relative abundance of families, and abundance of individual species all showed significant temporal patterns. Mean abundance peaked in Summer and Autumn and fell in Winter, whereas taxonomic richness and diversity were highest in Summer and lowest in Spring. Within the fish assemblage, multivariate ordination showed temporal segregation of species belonging to the same family or genus and expected to be functionally similar, suggesting that they avoid competition for space and resources by timing inward migration and peak occurrence differently. Of the environmental driving forces, which also showed temporal patterns of variation, salinity was the main factor affecting the distribution of individuals and species. The catch of young individuals of several marine species confirmed the role of this small lagoon as a nursery and feeding area, and emphasized the need for further studies.     

Intertidal gastropod assemblages shaped by key environmental variables across the northern Persian Gulf and the Gulf of Omanss

Variations in environmental factors can alter the species distribution pattern in intertidal rocky shores. The Persian Gulf (PG) and the Gulf of Oman (GO) vary substantially with respect to environmental and oceanographic conditions. The abundance and biodiversity of intertidal rocky gastropods in five locations across the northern PG and the GO were compared, and the environmental variables underlying the distribution pattern of these organisms were investigated. A total of 67 gastropod species were identified. The largest average density (294 ind./m²) and diversity (N = 43) for gastropods occurred in the Hotel Lipar station (LIP) located in Chabahar Bay in the GO. Clypeomorus bifasciata (107.43 ind./m²) followed by Cerithium caeruleum (94.67 ind./m²) were the most abundant species. Planaxis sulcatus and Siphonaria spp. occurred in all locations during both sampling occasions. Species richness and abundance of gastropods showed significant differences between LIP and remaining locations. A significant difference was found in assemblage structure across locations. In general, the species richness and density in the locations at GO were significantly larger than those locations in the PG, suggesting that the harsh environmental condition in the PG might be the forcing factor for this diminish. Distinct grouping was observed in both assemblage structure and species composition between locations in the PG and the GO. The spatial and temporal distribution patterns of gastropods assemblages were significantly correlated with variation in salinity and substrate rugosity.     

Meiofauna as descriptor of tourism-induced changes at sandy beaches

Tourism has long been considered as a 'clean industry' with almost no negative effects on the environment. This study demonstrated, in two different coastal systems (Mediterranean and Baltic), that tourism related activities are particularly affecting the sandy beach meio- and nematofauna in the upper beach zone, the specific ecotone in which many meiofauna species from both the marine and the terrestrial environment congregate. Tourist upper beaches are characterized by a lower % total organic matter (%TOM), lower densities, lower diversities (absence of Insecta, Harpacticoida, Oligochaeta, terrestrial nematodes and marine Ironidae nematodes) and higher community stress compared to nearby non-tourist locations. The %TOM was found to be the single most important factor for the observed differences in meiofauna assemblage structure at tourist versus non-tourist beaches in both the Mediterranean and the Baltic region. The free-living nematode assemblages from tourist upper zones depart significantly from expectations based on random selections from the regional nematode species pool. Furthermore upper zone assemblages are characterised by a low species diversity consisting of taxonomically closely related nematode species with r-strategist features. Generally, faunal differences between tourist and non-tourist beaches are decreasing towards the lower beach zones.     

Meiobenthos under mariculture conditions of the brown seaweed <Emphasis Type="Italic">Saccharina japonica</Emphasis> in Rifovaya Bay,Peter the Great Gulf,Sea of Japan

The qualitative and quantitative compositions of free-living marine nematodes were studied in Rifovaya Bay (Peter the Great Gulf, Sea of Japan). It was found that the density distribution of nematode populations in bottom sediments of Rifovaya Bay is nonuniform. In total, 72 nematode species were found, including Oncholaimium paraolium, Viscosia epapilosa, and Monoposthia latiannulata on all types of substrates. The dominant trophic group comprised “predators” (2B) and “scrapers” (2A). It was shown that the species composition of nematodes in Rifovaya Bay is very similar to the species composition of nematodes in the other areas of Peter the Great Gulf.     

Temporal dynamics of shallow subtidal meiobenthos from a beach in Tenerife (Canary Islands, northeast Atlantic Ocean)

A shallow subtidal (3 m deep) meiofaunal assemblage in Los Abrigos Bay, Tenerife, Canary Islands was sampled during May 2000-April 2001. Themain aims were to (1) find temporal variations inmeiofaunal assemblage structure and overall abundance, as well as in the most abundant meiofaunal species throughout the study period, and (2) identify environmental variables (sedimentary composition, organic matter content, and total nitrogen) that better explain meiofaunal assemblage structure during the study year. The most abundant species were the nematodes Siphonolaimus sp. 2 and Catanema sp., which represented 46.2% of the overall meiofaunal abundances and varied significantly throughout the study duration. Overall meiofaunal abundance and the most abundant taxonomic groups (nematodes, copepods, and oligochaetes) showed significant temporal variations during the study period. Nematodes overwhelmingly dominated during the study period, ranging from 78% in May to 97.34% in February. Multivariate analyses showed seasonality inmeiofaunal community structure during the study year, with the lowest abundances in May.     

Spatial patterns of epifaunal communities in San Francisco Bay eelgrass (Zostera marina) beds

Epifaunal invertebrate species, such as amphipods and isopods, have been shown to play key but varying roles in the functioning of seagrass habitats. In this study, we characterized patterns in the poorly known epifaunal communities in eelgrass (Zostera marina) beds in San Francisco Bay as a first step in understanding the individual and collective importance of these species, while testing predictions on spatial patterns derived from previous studies in other regions. Surveys conducted at five beds across multiple time periods (April, June, August and October 2007) showed that San Francisco Bay eelgrass beds varied strongly in epifaunal community composition, total, and relative abundance, and that abundance differed markedly among time periods. In contrast to findings by others, morphologically complex flowering shoots frequently harbored greater numbers of epifauna (>2× and up to 10× more individuals) than vegetative shoots, but not different species assemblages. Similar to previous studies, several abiotic factors did not explain patterns in distribution and abundance among beds. The proportion of introduced species was very high (>90% of all individuals), a finding unique among seagrass epifaunal studies to date. Defining numerical patterns in epifaunal communities will inform related efforts to understand effects of epifaunal species and assemblages on eelgrass growth dynamics, seed production, and higher order trophic interactions over space and time.     

Regional variation in springtime ichthyoplankton assemblages in the northeast Pacific Ocean

The coastal regions of the northeast Pacific support large, economically valuable fishery resources and provide nursery areas for many fish species. Over the last few decades, there have been dramatic shifts in species abundance and composition in this area. In this paper, we examine the springtime spatial patterns in the ichthyoplankton of three oceanographically different regions, the Southeast Bering Sea, the Gulf of Alaska and the U.S. West Coast. The data examined are a subset of a larger database (comprising data from cruises conducted from 1972 to 1997) that is being used to investigate spatial, seasonal and interannual patterns in ichthyoplankton of the northeast Pacific in relation to environmental conditions. Ichthyoplankton were collected during seven cruises using 60-cm bongo nets. Spatial patterns of ichthyoplankton were examined using both classification and ordination techniques. Relative Bray-Curtis dissimilarity coefficients calculated from the log₁₀ (n+1) of abundance data were used as input to the numerical classification of species and stations. Nonmetric multidimensional scaling was also applied to the abundance data to examine geometric patterns in the data. The numerical analyses of the species abundance data sets for each cruise revealed spatial patterns in the ichthyoplankton that suggest the occurrence of geographically distinct assemblages of fish larvae in each region. For all three sampling regions, the assemblage structure is primarily related to bathymetry, and Shelf, Slope, and Deep-Water assemblages are described. This shallow to deep-water gradient in species occurrence and abundance reflects the habitat preference and spawning location of the adult fish. Another degree of complexity is superimposed on this primary assemblage structure in each region and seems to be related to local topography and the prevailing current patterns. The patterns in ichthyoplankton assemblages of the three regions in the northeast Pacific Ocean described here form the basis for future investigations of spatial and temporal patterns in the ichthyoplankton of the subarctic Pacific.Regional Index Terms: Northeast Pacific Ocean, Southeast Bering Sea, Gulf of Alaska, U.S. West Coast.     

The impact of implanted whale carcass on nematode communities in shallow water area of Peter the Great Bay (East Sea)

In May, 2007 we sank the remains of a Minke whale (Balaenoptera acutorostrata) in the East Sea, Peter the Great Bay, at 30 m of water near the coast of Big Pelis Island. In the present study we describe the nematode communities in sediments under the implanted whale carcass. Abundance of nematodes increased with the distance from the carcass. Dominant trophic group was non-selective deposit feeders. The highest values of indexes of a specific diversity and evenness were noted in sediments under the whale, while domination index occurred at the highest distance from the whale. The suggestion is made that the cause of low density of nematodes in sediments under the whale is an extreme increase in number of macrofaunal animals, and predation and food competition between macro- and meiofauna. The changes noted in nematode assemblages living in an implanted whale in shallow waters are similar to those in deep-sea assemblages.     

An assessment of the spatial heterogeneity of environmental disturbance within an enclosed harbour through the analysis of meiofauna and nematode assemblages

Significant spatial heterogeneity in the abundance and composition of meiofaunal and nematode assemblages was described inside the Genoa-Voltri harbour (Genoa, Italy) in relation to variation in the main environmental variables. In harbour sediments characterized by low Eh values and high organic matter concentrations, total meiofauna abundance was lower (948 ± 919 ind 10 cm⁻²), nematode individual biomass was higher (0.17 ± 0.07 μg C), kinorhynchs and tanaids were completely absent, and the nematode assemblage was dominated by the genera Terschellingia, Sabatieria (pulchra group) and Paracomesoma. In contrast, in sediment characterized by lower levels of organic pollution, meiofaunal abundance was higher (1085 ± 737 ind 10 cm⁻²), nematode individual biomass was lower (0.11 ± 0.04 μg C), kinorhynchs and tanaids were present and the nematodes were dominated by the genera Desmodora, Daptonema, Anticoma and Halalaimus.Environmental disturbance as assessed by the analysis of meiofaunal and nematode assemblages and sediment environmental variables changed significantly over a scale hundreds of meters, but did not follow a gradient from the inner to the outer harbour. Analysis of nematode assemblages is proposed as a useful tool for the identification of environmental risk areas which may assist in the development of good planning, monitoring programmes and better management of harbour ecosystems.     

Method‐dependent influence of environmental variables on reef fish assemblages when comparing trap and video surveys

Despite substantial survey effort and a large body of literature on abiotic and biotic factors in temperate reef ecosystems, knowledge of the complex and interactive effects of environmental variables on those communities is limited. Various survey methods have been developed to study environmental predictors of biodiversity, but there remains a gap in our understanding of how survey results are influenced by environmental factors. Here, we surveyed the fish assemblage associated with southeastern U.S. temperate marine reefs with simultaneous, paired trap, and camera gears throughout a ~50,000 km² area during 2011–2013 and assessed the influence of environmental variables on the trap‐ and video‐surveyed assemblages. Predictor variables in the multivariate general linear models included depth, temperature, month, year, location, substrate relief, percent sessile biota, biota type, and turbidity. Depth and latitude had the greatest influence on the fish assemblage for both gears. The influence of habitat variables differed between methods and percent biota explained more variation in the fish assemblage when assessed by traps, while substrate relief and biota type explained more variation in the fish assemblage when assessed by video. In general, habitat complexity was positively related to the abundance of fishes in the video survey, but there was a negative relationship in the trap survey. Differences between gears were species‐specific and the influences of environmental variables were similar for some species such as Haemulon plumierii and Hyporthodus niveatus. The methods presented here can be used to assess method‐dependent differences in fish assemblages, which is a necessary precursor to assess the effect of environmental variables on the accuracy of surveys.     

Disturbance of benthic macrofauna in relation to hypoxia and organic enrichment in a eutrophic coastal bay

This study demonstrated the spatiotemporal patterns of the environmental conditions and benthic macrofauna in Tokyo Bay, Japan, and investigated the factors causing disturbances in the assemblage structure. In the north-central areas, the density and species diversity of the macrobenthos was low. Although hypoxia appeared in July, defaunation occurred in August. The delayed defaunation and recolonization soon after the abatement of hypoxia were attributed to several polychaete and bivalve species that were tolerant to the hypoxic environment. In the southeastern areas, however, the density and species diversity of the macrobenthos was high throughout the year, and no defaunation was recorded. Multivariate analyses showed that the disturbance in the macrofauna correlated with organic enrichment in the sediment and bottom-water hypoxia. There is a concern about further impairment of the macrofauna in the bay due to the expansion of sediment with high levels of organic matter towards the southern regions that could cause hypoxia and subsequent defaunation.     

Nematode species distribution patterns at the Håkon Mosby Mud Volcano (Norwegian Sea)

The Håkon Mosby Mud Volcano (HMMV) is a methane seep that is densely populated by the bacteria Beggiatoa spp. as well as by tubeworms of the Family Siboglinidae. Analyses of samples from seven stations located in five different habitats (bare sediments, bacterial mats, siboglinid fields, sediments with small patches of siboglinids and areas of ‘normal’ sea floor) revealed differences in the density and species‐level diversity of nematode communities. Total densities increased from stations inside the mud volcano and on its rim towards the ‘normal’ areas outside the volcano. Nematode species diversity was similar in samples from the siboglinid fields and the bare HMMV sediments. However, the sediment with patches of siboglinids collected outside the volcano was characterised by a diverse nematode community comprising 47 species, whereas the control sediments without siboglinids yielded only 27 species. The nematode assemblage at the bacterial mat site included only two identified species, Halomonhystera disjuncta and Sabatieria ornata, with H. disjuncta being strongly dominant. Terschellingia distlamphida, S. ornata and Aponema ninae dominated nematode communities at the siboglinid fields and in bare HMMV sediments. Species dominating at stations inside the caldera were found in comparable low densities in the sediment with siboglinid patches collected outside the volcano, but were missing in the background samples, where species of Endeolophos, Acantholaimus and Desmoscolex were dominant. Species diversity generally decreased with sediment depth. A subsurface‐dwelling nematode community was observed in the siboglinid fields and the bare sediments. Background sediments showed a sharp decline with 18–20 species at 0–2 cm versus three species at 3–5 cm sediment depth. The trophic composition of the nematode fauna at the HMMV showed a prevalence of deposit feeders at almost all stations, whereas background sediments exhibited a uniform distribution of non‐selective and selective deposit feeders and epistrate feeders. The high percentage of deposit feeders inside the mud volcano could be related to the grain‐size distribution and the significantly higher bacterial biomass compared to the control sediments.