The influence of reef type and seasonality on population structure of coral‐reef fishes within Malindi Marine Park,Kenya

Effective conservation requires knowledge of the effects of habitat on distribution and abundance of organisms. Although the structure of coral reef fish assemblages is strongly correlated with attributes of reef structure, data relating reef types to fish assemblages are scarce. In this study we describe the influence of gross habitat characteristics and seasonality on coral reef fish assemblages of fringing and patch reefs in Kenya. Results showed that total fish abundance was not significantly different between the reefs; however, the fringing reef had higher species diversity during both the northeast (42 spp.) and southeast (36 spp.) monsoon seasons when compared to the patch reef. The more fished species (e.g. Siganus sutor and Lethrinus mahsena) were more abundant on the patch reef in both seasons. Statistical analysis indicated common species between the reefs were more abundant on the fringing reef. Seasons affected abundance of the more vagile species (S. sutor), whereas the reef‐attached sky emperor, L. mahsena was affected more by reef type than by seasons. No significant interaction effects of habitat and seasons were found, indicating independence of habitat and environmental variability in affecting fish assemblages on the reefs. Smaller sized fish dominated the fringing reef more than the patch reef, whereas the skewness index (Sk) indicated a normal‐sized frequency distribution on the patch reef. Trophic structure of the fishes varied more within than between reefs, whereas fish assemblage structure was affected more by seasons on the fringing reef. These results suggest that conservation measures such as marine protected area (MPA) design and setting should consider effects of reef morphology and environmental variability on coral‐reef fish assemblage structure.     

Spatial pattern of coastal fish assemblages in different habitats in North‐western Mediterranean

Variability of fish assemblages across habitat structures can depend on spatial scales. A hierarchical sampling design was used to assess the spatial variability of temperate fish assemblages in different habitats and at multiple scales. Underwater visual censuses were carried out along the coasts of Elba Island (NW Mediterranean) on Posidonia oceanica beds, rocky algal reefs and sandy habitat at three spatial scales, namely tens of metres (individual replicates), hundreds of metres (sites) and tens of kilometres (locations). At the assemblage level, there was a clear relationship between fish and habitat type and the observed habitat‐related differences were largely dependent on species identity. Fish assemblages on P. oceanica beds and rocky reefs shared a high number of species, whereas overlap with sandy assemblages was negligible. Multivariate analyses revealed significant differences in fish assemblages among habitats, although there was also a significant habitat × site interaction. These differences relied mainly upon assemblage composition and species richness. Assemblages on rocky reefs and P. oceanica meadows usually harboured a higher number of species and individuals compared with sandy assemblages. Nevertheless, the patterns of habitat‐related differences in species richness and, especially, in the total number of fish, changed significantly from site to site. Eight species showed significant differences over habitats, but they were not consistent due to the interaction of habitat with site. Predictability of fish at both assemblage and population levels decreased with the scale of observation, and the spatial pattern of fish observed at the smallest scale was likely dependent on factors other than habitat type.     

Effects of substratum type on fish assemblages in shallow areas of a tropical estuary

While there is already a comprehensive understanding of the effects of environmental variables, such as dissolved oxygen, temperature and salinity, on the structure, biomass and metabolism of aquatic biota in estuarine habitats, the effect of sedimentation, a harmful underlying factor, remains unclear. The aim of this study was to assess the differences in fish assemblages along the freshwater to salt water gradient of a large tropical estuary, and to evaluate the effects on them of habitat disturbance associated with shallow water sedimentation in the intertidal areas. Fish and environmental variables were recorded in the upper, middle and lower salinity zones of the estuary at ebb tide in both the dry and wet seasons. Sediment samples associated with different levels of habitat disturbance were analysed using granulometry, and their organic content and dissolved oxygen levels were quantified. Water temperature, salinity, pH and dissolved oxygen levels were also measured. Habitat disturbance was found to be correlated with the density, biomass and richness of fish assemblages. A total of 77 species were recorded, forming two distinct fish assemblages, with the Eleotridae family dominating in the upper zone, and Gerreidae, Gobiidae and Tetraodontidae the most common in the middle and lower estuary. Changes in the structure of fish assemblages, including reductions in density, biomass and richness, were associated with disturbance to natural features, where muddy sediment was replaced by sandy sediment and the quantity of organic matter fell. Atherinella brasiliensis was the species which showed a preference for the disturbed areas in the middle and lower zones, while Dormitator maculatus showed a preference for them in the upper estuary. They may be taken as indicators of habitat disturbance due to shallow sedimentation.     

Deep-sea reef fish assemblage patterns on the Blake Plateau(Western North Atlantic Ocean)

Deep‐water coral habitats are scattered throughout slope depths (360–800 m) off the Southeastern United States (SEUS, Cape Lookout, North Carolina, to Cape Canaveral, Florida), contributing substantial structure and diversity to bottom habitats. In some areas (e.g. off North Carolina) deep corals form nearly monotypic (Lophelia pertusa) high profile mounds, and in other areas (e.g. off Florida) many species may colonize hard substrata. Deep coral and hard substrata ecosystems off the SEUS support a unique fish assemblage. Using the Johnson‐Sea‐Link submersible (in 2000–2005, 65 dives), and a remotely operated vehicle (in 2003, five dives), fishes were surveyed in nine deep reef study areas along the SEUS slope. Forty‐two benthic reef fish species occurred in deep reef habitats in these study areas. Species richness was greatest on the two coral banks off Cape Lookout, North Carolina (n = 23 and 27 species) and lowest on the two sites off Cape Canaveral, Florida (n = 7 and 8 species). Fish assemblages exhibited significantly (ANOSIM, Global R = 0.69, P = 0.001) different patterns among sites. Stations sampled off North Carolina (three study areas) formed a distinct group that differed from all dives conducted to the south. Although several species defined the fish assemblages at the North Carolina sites, Laemonema barbatulum, Laemonema melanurum, and Helicolenus dactylopterus generally had the most influence on the definition of the North Carolina group. Fish assemblages at three sites within the central survey area on the Blake Plateau were also similar to each other, and were dominated by Nezumia sclerorhynchus and L. melanurum. Synaphobranchus spp. and Neaumia sclerorhynchus differentiated the two southern sites off Cape Canaveral, Florida, from the other station groups. Combinations of depth and habitat type had the most influence on these station groups; however, explicit mechanisms contributing to the organization of these assemblages remain unclear.     

春季长江口外海底层鱼类群聚特征及其与环境因子的关系

为了研究春季长江口外海底层鱼类群聚特征及其与环境因子的关系,我们根据2015年5月长江口外海底层鱼类的调查资料,使用聚类分析(Cluster)、非参数多维标度排序(NMDS)、相似性分析(ANOSIM)、相似性百分比分析(SIMPER)以及典型对应分析(CCA)等方法对资料进行分析。本研究共记录底层鱼类58种,其中鲈形目种类数最多(21种),鲽形目次之。六丝钝尾虾虎鱼(Amblychaeturichthys hexanema)是优势种。底层鱼类可以划分为3个群组—近海组、南部中间组和南部远海组,不同群组的物种组成差异显著。南部中间组和南部远海组的物种多为东海外海种类,这可能是近岸黑潮底层分支影响的结果。物种数、Margalef丰富度、Shannon-Wiener多样性和Pielou均匀度从近海到与远海呈逐渐增加的趋势。CCA分析表明深度是显著影响底层鱼类的环境因子。短鳄齿鱼(Champsodon snyderi)、丝鳍(Repomucenus virgis)、多棘腔吻鳕(Coelorinchus multispinulosus)等东海外海种类与深度呈正相关,而优势种六丝钝尾虾虎鱼受环境因子影响较小。     

Do predatory fish of benthic crustaceans vary between kelp and barren reef habitats in northeastern New Zealand?

Fish assemblages that included known predators of benthic crustaceans were compared between kelp and barren habitats in northeastern New Zealand using baited underwater video census methods. The benthic-feeding fish were observed in winter, spring/summer and autumn, as well as during night-time in spring/summer. Overall, the fish assemblages varied between barren and kelp habitat, being most marked in winter. Individual benthic-feeding species, such as grey mao mao (Scorpis lineolatus) and leatherjacket (Meuschenia scaber) were associated with barren habitat, while the spotted wrasse (Notolabrus celidotus) was more strongly associated with kelp habitat. The results suggest that changes in habitats on coastal reefs affect populations of species that are benthic predators, which may in turn influence the distribution and abundance of their prey species, such as juvenile spiny lobsters.     

Spatial distribution of surgeonfish and parrotfish in the north sector of the Mesoamerican Barrier Reef System

Surgeonfish and parrotfish play an important role in structuring the benthic communities of coral reefs. However, despite their importance, little is known about their distribution patterns in the north sector of the Mesoamerican Reef System. This study evaluated the distribution of these fish in 34 sites in four habitats (lagoon, front, slopes and terrace) along a depth gradient (c 0.5–20 m). These herbivorous fish were assessed by visual censuses. Species dominance was evaluated for each habitat using SIMPER analysis. Habitat characteristics data were collected to determine the relationship between habitat conditions and spatial variations in herbivorous fish (using abundance and biomass as a proxy) via redundancy analysis. The herbivorous fish assemblage had a low density (fish per 100 m²) and biomass (g·100 m^?2) in comparison with assemblages in similar studies. In contrast, species richness was high compared with other studies in the Caribbean. Spatial variation of the abundance, biomass and size of herbivorous fish was strongly related to coral and seagrass cover, as well as to depth and rugosity. These four variables were critical in controlling the distribution patterns of the herbivorous fish assemblages. No associations were found between fish and macroalgae or any other benthic group. The present study indicates that the species richness of surgeonfish and parrotfish was not regionally affected by the dominance of macroalgae in the habitats studied. Seagrass beds and the coral reef matrix need to be preserved for the herbivorous fish assemblages to remain healthy and capable of controlling excess macroalgae growth.     

Evidence that whales (Balaenoptera borealis) visit drifting fish aggregating devices: do their presence affect the processes underlying fish aggregation?

Evidence of the presence of a group of sei whales (Balaenoptera borealis) detected around drifting fish aggregating devices (FADs) was provided by omnidirectional multi‐beam sonar during a survey off the Seychelles (Indian Ocean). The short visit by the sei whales produced a significant change in the behaviour of the fish assemblage associated with the FAD. There was first a significant increase in fish density when the whales approached the FAD, then a marked decrease after the whales had moved away from the FAD. Furthermore, the fish density was still low, 3 h after the whales had left the FAD. We assume that the presence and behaviour of the sei whales led some of the fish initially associated with the FAD to move away from it. There has been a considerable increase in the use of drifting artificial FADs in the Indian Ocean in recent decades. The frequency of cetacean visits to drifting FADs in the Indian Ocean is unknown, but they may have a major impact on assemblages of pelagic fish species around FADs. The effect of marine mammals on FAD‐associated fish could be relevant to the ecological trap theory (FAD acting as a trap for their associated fish) because of their impact on the dynamics of fish aggregation processes, through commensalism and/or predator–prey interactions.     

Hydrothermal faunal assemblages and habitat characterisation at the Eiffel Tower edifice (Lucky Strike,Mid‐Atlantic Ridge)

The Eiffel Tower edifice is situated in the Lucky Strike hydrothermal vent field at a mean depth of 1690 m on the Mid‐Atlantic Ridge (MAR). At this 11‐m‐high hydrothermal structure, different faunal assemblages, varying in visibly dominant species (mussels and shrimp), in mussel size and in density of mussel coverage, were sampled biologically and chemically. Temperature and sulphide (∑S) were measured on the different types of mussel‐based assemblages and on a shrimp‐dominated assemblage. Temperature was used as a proxy for calculating total concentrations of CH₄. Based on the physico‐chemical measurements, two microhabitats were identified, corresponding to (i) a more variable habitat featuring the greatest fluctuations in environmental variables and (ii) a second, more stable, habitat. The highest temperature variability and the highest maximum recorded temperatures were found in the assemblages visibly inhabited by alvinocaridid shrimp and dense mussel beds of large Bathymodiolus azoricus, whereas the less variable habitats were inhabited by smaller‐sized mussels with increasing bare surface in between. Larger mussels appeared to consume more ∑S compared with smaller‐sized (<1 cm) individuals and thus had a greater influence on the local chemistry. In addition, the mussel size was shown to be significantly positively correlated to temperature and negatively to the richness of the associated macrofauna. The presence of microbial mats was not linked to specific environmental conditions, but had a negative effect on the presence and abundance of macro‐fauna, notably gastropods. Whereas some taxa or species are found in only one of the two microhabitats, others, such as polychaetes and Mirocaris shrimp, cross the different microhabitats. Temperature was proposed to be a more limiting factor in species distribution than ∑S.     

东海中南部鱼类群聚结构的空间特征

依据1997～2000年东海中南部(25°30'～29°00'N,120°30'～127°00'E)四个季节的底拖网调查资料,运用聚类分析和非度量多维标度(NMDS)的方法分析了东海中南部鱼类群聚结构的空间特征,结果显示,东海中南部鱼类群聚大致可分为近海群聚和外海群聚.在不同季节两个群聚的种类组成保持了相对的稳定,并且具有一定的持续性.近海群聚的特征种类为带鱼、发光鲷等.外海群聚的特征种类主要为黄鳍马面鲀、短尾大眼鲷、黄鲷等.鱼类群聚与环境因子水深有较好的相关关系.     

Beta diversity of tropical marine benthic assemblages in the Spermonde Archipelago, Indonesia

In order to preserve diversity it is essential to understand how assemblages change across space. Despite this fact, we still know very little about how marine diversity is spatially distributed, especially among lesser‐studied invertebrate taxa. In the present study beta‐diversity patterns of sea urchins, sponges, mushroom corals and larger foraminifera were assessed in the Spermonde Archipelago (Indonesia). Using ordinations we showed that the inshore zone (<5 km offshore), midshore zone (5 < x < 30 km offshore) and distance offshore zone (>30 km offshore) all contained distinct assemblages of sponges and corals, while only foraminifera assemblages from the inshore (<5 km offshore) zone were distinct. There was a significant spatial pattern of community similarity for all taxa surveyed, but this pattern proved to be wholly related to environmental variables for sponges and foraminifera, and primarily for mushroom corals and sea urchins. The lack of a pure spatial component suggests that these taxa may not be dispersal limited within the spatial scales of this study (c. 1600 km²). The analyses of the corals and foraminifera were additionally tested at two spatial scales of sampling. Both taxa were primarily associated with local‐scale environmental variables at the local scale and larger‐scale variables at the larger scale. Mean inter‐plot similarity was also higher and variation lower at the larger scale. The results suggest that substantial variation in similarity can be predicted using simple locally assessed environmental variables combined with remotely sensed parameters.     

Fish assemblages across the marine to low salinity transition zone of a temperate estuary

This 3-year study provides a large-scale perspective of fish assemblage structure across an ocean–estuarine ecotone, given range of salinity encountered (0.1–32) based on sampling at 12 stations along 40 km from the Mullica River (river), Great Bay (bay), and the adjacent inner continental shelf (ocean) in southern New Jersey. Otter trawl (4.9 m, 6 mm mesh) collections were dominated by young-of-the-year of most of the 49 species encountered. Species richness and abundance appeared greatest in the ocean, decreased (with an increase in inter-station variability) in the bay, and appeared to increase again towards the uppermost river stations. The same areas contained three non-discrete, but identifiable, fish assemblages based on Detrended Correspondence Analysis. Members of the Triglidae and Stromateidae characterized the ocean and bay, whereas representatives of the Percichthyidae and Ictaluridae characterized the river. Several species, including Anchoa mitchilli and Cynoscion regalis, exhibited a ubiquitous distribution across the sampling area. Further analyses with Canonical Correspondence Analysis identified salinity and geographic distance, among the variables examined, as the most important determinants in shaping the assemblages. Other contributors included habitat heterogeneity and water depth. In summary, these observations indicate that large-scale patterns in the structure of this estuarine fish assemblage are primarily a result of individual species' responses to dominate environmental gradients, as well as ontogenetic migrations, whereas smaller-scale patterns appear to be the result of habitat associations that are most likely driven by foraging, competition, and/or predator avoidance.     

Off‐reef planktivorous reef fishes respond positively to decadal‐scale no‐take marine reserve protection and negatively to benthic habitat change

The effects of no‐take marine reserve (NTMR) protection and changes in benthic habitat on fusiliers (family Caesionidae) were investigated at four small Philippine offshore islands on time scales of 10–31 years. Fusiliers are highly mobile, schooling, medium‐sized planktivorous fish that generally feed “off‐reef.” For these reasons, and given the small size of the NTMRs (3.6–37.5 ha) in this study, it was predicted that fusilier density would be unlikely to show clear effects of NTMR protection, or to respond to changes in benthic habitat. In contrast to predictions, clear NTMR effects were observed on fusilier density at three of the four NTMRs, with durations of protection from 14 to 31 years. Furthermore, the study provided strong evidence that benthic variables, specifically cover of live hard coral and dead substratum, affect the density of fusiliers. This effect of benthic habitat on density was highlighted by several major environmental disturbances that caused shifts in the benthic habitat from live hard coral to dead substratum. For two of the three most abundant species of fusiliers individually, and for all three of them combined (Pterocaesio pisang + Caesio caerulaurea + Pterocaesio digramma/tessellata), as live hard coral cover decreased, fish density decreased. It is hypothesized that these “off‐reef” daytime feeders may have such a strong association with live hard coral cover because they use this habitat as nocturnal sleeping sites. Multivariate analyses indicated that, across all sites and times sampled, cover of live hard coral and dead substratum accounted for 38% of the variation in fish assemblage structure. These results are important as there are very few reports in the published literature of strong effects of NTMR protection or changes in benthic habitat on the density and assemblage structure of fusiliers.     

Diel and seasonal variability in the fish community structure of a mud‐bottom estuarine habitat in the Gulf of Mexico

We hypothesized that temporal variation in fish species composition and community structure in a low complexity habitat in the Pueblo Viejo Lagoon, Mexico, is influenced by diel light/dark cycles and tidal stage, and by seasonal changes in salinity and temperature. We collected a total of 17,661 individuals during 2‐h interval sampling over six bi‐monthly 24‐h sampling cycles representing 53 species, of which 11 (～20%) were previously unknown in the system. Diel variation indicated that significantly higher numbers of individuals and species were caught at night, whereas diversity and evenness were higher during the day. Species richness was significantly higher in July and January, whereas diversity and evenness peaked around May; both were correlated with temperature. Diel variation in species composition was influenced primarily by the light/dark cycle. Cluster analyses of each diel cycle separated fish assemblages from midday samples from those of nocturnal samples, separated by an extended wide transition period as fish moved at dawn and during the late afternoon/dusk. Significant shifts (as determined by MANOVA) in assemblage structure occurred between months. Canonical correspondence analysis showed that temperature and day/night effects were the most important environmental variables structuring the fish community. This constrained ordination also defined species with specific habitat preferences as follows: (i) diurnal, warm temperature species (mainly planktivores) (Brevoortia gunteri, Cetengraulis edentulus, Diapterus auratus, and Membras martinica); (ii) nocturnal, warm temperature species (mainly predators) (Citharichthys spilopterus, Cathorops melanopus, and Bairdiella spp.); and (iii) low temperature, diurnal species (Brevoortia patronus and Mugil curema) or those with twilight and nocturnal distributions (Anchoa mitchilli, the most numerically abundant species). Our results indicate that diel and seasonal changes in fish community structure were mainly related to day/night cycles and temperature regimes.     

To what extent are the fish compositions at nearshore sites along a heterogeneous coast related to habitat type?

This study has tested the following main hypotheses. (1) The composition of fish assemblages in nearshore waters along the lower west coast of Australia will differ significantly among four habitat types (1–4), which could be distinguished quantitatively from each other by differences in the values for a statistically selected suite of enduring environmental variables. (2) The extents of the differences in ichthyofaunal composition among the four habitat types will statistically match those in the suite of environmental variables that distinguish those habitat types. A 60.5 m long seine net, with 9 mm mesh in the bunt, was used seasonally for 2 years to sample fish from sites representing each of the four nearshore habitat types, which differed broadly in their exposure to wave activity and the extent and location of seagrass beds. The compositions of the fish faunas in each habitat type were significantly different from each other in all but one case. Ichthyofaunal composition did not differ significantly between years in any habitat type and differed significantly among seasons in only one habitat type. The arrangement of the rank orders of similarity in matrices constructed from the abundances of the fish species at each site also did not differ between years but did differ among seasons. Moreover, the arrangement of the ranks in the similarity matrices produced from the ichthyofaunal data recorded at the various sites in each season were significantly correlated with that in the distance matrix constructed from the environmental data for those sites, with the correlation (ρ) ranging from 0.476 in winter to 0.696 in autumn. These results thus demonstrate that the extents of the differences in the fish compositions among the various habitat types parallel those in the environmental data for the corresponding habitat types. The subset of species that provided the best correlation with the environmental distance matrix, and which was thus most responsible for distinguishing among the fish compositions at the four habitat types, was also determined for each season.     

Comparison of the fish assemblages associated with Posidonia oceanica after the partial loss and consequent fragmentation of the meadow

An extensive Posidonia oceanica meadow was partially destroyed by excavation, resulting in areas of seagrass habitat of equal complexity (shoot density) but different heterogeneity (degree of fragmentation). The fish assemblages associated with differently fragmented beds were compared from a landscape perspective. Differences in the fish assemblages were detected, with several species showing different patterns: (1) species that increased their abundance along with the degree of bed fragmentation, (2) species that were more abundant in fragmented beds, but did not show differences between more or less fragmented beds, and (3) species that were mostly abundant in large seagrass patches or in the continuous meadow. The fish assemblages were also affected by depth, but further research is needed to determine properly this effect. Some ecological mechanisms are suggested to operate in the interaction between P. oceanica and the held fish assemblage.     

Biotic variation in coastal water bodies in Sussex, England: Implications for saline lagoons

Coastal water bodies are a heterogeneous resource typified by high spatial and temporal variability and threatened by anthropogenic impacts. This includes saline lagoons, which support a specialist biota and are a priority habitat for nature conservation. This paper describes the biotic variation in coastal water bodies in Sussex, England, in order to characterise the distinctiveness of the saline lagoon community and elucidate environmental factors that determine its distribution. Twenty-eight coastal water bodies were surveyed for their aquatic flora and invertebrate fauna and a suite of exploratory environmental variables compiled. Ordination and cluster analyses were used to examine patterns in community composition and relate these to environmental parameters. Biotic variation in the coastal water body resource was high. Salinity was the main environmental parameter explaining the regional distribution of taxa; freshwater and saline assemblages were evident and related to sea water ingress. Freshwater sites were indicated by the plant Myriophyllum spicatum and gastropod mollusc Lymnaea peregra, while more saline communities supported marine and brackish water taxa, notably a range of chlorophytic algae and the bivalve mollusc Cerastoderma glaucum. Site community differences were also related to bank slope and parameters describing habitat heterogeneity. A saline lagoon community was discerned within the matrix of biotic variation consisting of specialist lagoonal species with associated typically euryhaline taxa. For fauna, the latter were the molluscs Abra tenuis and Hydrobia ulvae, and the crustaceans Corophium volutator and Palaemonetes varians, and for flora they were the algae Ulva lactuca, Chaetomorpha mediterranea, Cladophora spp. and Enteromorpha intestinalis. One non-native polychaete species, Ficopomatus enigmaticus, also strongly influenced community structure within the lagoonal resource. The community was not well defined as specialist and associated taxa were distributed throughout the spectrum of sites surveyed. Implications for the identification and conservation of saline lagoons are discussed.     

Ichthyoplankton abundance, distribution, and assemblage structure in the Gulf of Alaska during September 2000 and 2001

Autumn ichthyoplankton assemblage structure in the Gulf of Alaska (GOA) region has not previously been characterized. Ichthyoplankton data from September 2000 and 2001 survey collections were analyzed to describe assemblages in the western GOA, to examine interannual variation in assemblages, and to relate observations to oceanographic conditions. Taxa with the highest frequency of occurrence (2000/2001) included Osmeridae (94/87%), Hexagrammos lagocephalus (57/45%), Sebastes spp. (35/47%) and Bathymaster spp. (27/57%). Through the use of clustering techniques and ordination, three identifiable larval assemblages common to both years were identified. Slope assemblages appeared well defined in both years, while nearshore and mid-shelf assemblages tended to be more loosely associated and variable between years. Analyses of environmental variables (temperature, salinity, water depth, distance from shore, and water transport) suggest ichthyoplankton assemblage structure is affected primarily by bathymetry and circulation. We demonstrate that early autumn ichthyoplankton assemblage structure in the GOA is fundamentally linked to variations in macro- (slope vs. shelf) and meso-scale topography (on-shelf proximity to land masses), and suggest that these intrinsic associations may be modified by spatial and temporal variations in local hydrographic conditions.