The influence of climate on mechanistic pathways that affect lower food web production in Northern San Francisco Bay estuary

Significant coherence among time series of environmental and biological production variables suggested mechanistic pathways through which climate contributed to the downward shift in estuarine production (biomass) in northern San Francisco Bay estuary, 1975–1993. Climate directly and indirectly affected physical processes in the estuary through precipitation and its subsequent impact on streamflow and physical variables affected by streamflow. Climate also directly influenced air temperature and wind velocity. The influence if climate was evaluated through a climate index based on sea level pressure. A shift in this climate index in the early 1980s coincided with changes in many environmental variables including water transparency, water temperature, wind velocity, and rainfall. These physical changes were accompanied by a decrease in diatom, total zooplankton, andNeomysis mercedis carbon at the base of the food web throughout the estuary. Box-Jenkins time series coherence analysis was used to quantify associations among these physical, chemical, and biological time series for nine regions of the estuary. These associations were used to develop a conceptual model of mechanistic pathways that directly linked food web carbon production to climate. Strong coherence among diatom, zooplankton, andN. mercedis carbon time series suggested climate also had an indirect impact on food web production through trophic cascade. Differing mechanistic pathways among the nine regions of the estuary suggested climate was an important contributor to the spatial variability in total food web production and trophic structure.     

The responses of Patuxent River upper trophic levels to nutrient and trace element induced changes in the lower food web

As a result of human activities, coastal waters can be exposed to multiple stressors that affect primary producers and their interactions with higher trophic levels. Mesocosm experiments were conducted during spring and summer 1996–1998 to investigate the responses of natural populations of primary producers to multiple stressors and the potential for these responses to be transmitted to higher trophic levels (i.e., copepods, bivalves, anemones, and fish). The effects of two stressors, elevated nutrient and trace element loadings, were examined individually and in combination. Nutrient additions had a positive effect on biomass, productivity, and abundance of primary producers (Breitburg et al. 1999; Riedel et al. 2003). Growth or abundance of consumers increased with nutrient additions, but the magnitude of the response was reduced relative to that of their prey. Responses to trace element additions varied seasonally and among taxa. The responses of zooplankton and bivalves to stressor additions were affected by the biomass and changes in species composition of phytoplankton assemblages. The presence of fish predators did not alter zooplankton responses to stressor additions. These results suggest that the extent to which nutrient and trace element effects are transmitted from primary producers to higher trophic levels depends on the capacity of consumers to respond to stressor-induced changes in abundance and species composition of prey, on the absolute abundance of prey, and on the ability of predators to feed on alternative prey. The magnitude of the effects of stressors on estuarine food webs may depend on seasonal variability in species composition of phytoplankton assemblages, whether sensitive species dominate, and whether these species are important prey for secondary consumers. Because spatial and temporal patterns in nutrient and trace element loadings to the estuary can affect species composition of primary producers, it is critically important to examine the magnitude, timing, and spatial relationships of loadings of multiple stressors to coastal waters in order to understand the impacts of these stressors on higher trophic levels.     

The influence of phytoplankton community composition on primary productivity along the riverine to freshwater tidal continuum in the San Joaquin River,California

Differences in phytoplankton community composition along a riverine to, freshwater tidal continuum was an important factor affecting the primary productivity and quantity of phytoplankton biomass available to the San Francisco Estuary food web downstream. The relative contribution of riverine and freshwater tidal phytoplankton was determined using measurements of primary productivity, respiration, and phytoplankton species composition along a riverine to freshwater tidal gradient in the San Joaquin River, one of two major rivers that flow into, the San Francisco Estuary. Chla-specific net primary productivity was greater in the freshwater tidal habitat and was correlated with both a higher growth efficiency and maximum growth potential compared with the river upstream. Cluster analysis indicated these differences in growth parameters were associated with differences in species composition, with greater percent diatom and green algal species biomass upstream and flagellate biomass downstream. Correlation between the chla specific net productivity and phytoplankton species composition suggested the downstream shift from riverine diatom and green algal species to flagellate species contributed to the seaward increase in net primary productivity. Environmental conditions, such as specific conductance and water transparency, may have influenced primary productivity along the riverine to freshwater tidal continuum through their effect on both species composition and growth rate. Data suggest light was not the sole controlling factor for primary productivity in this highly turbid estuary; phytoplankton growth rate did not increase when riverine plankton communities from low light conditions upstream were exposed to higher light conditions downstream. This study suggests that the availability of phytoplankton biomass to the estuarine food web may be influenced by management of both phytoplankton growth and community composition along the riverine to freshwater tidal continuum.     

Chronic food limitation of egg production in populations of copepods of the genusAcartia in the San Francisco estuary

Egg production of planktonic copepods, is commonly measured as a proxy for secondary production in population dynamics studies and for quantifying food limitation. Although limitation of copepod egg production by food quantity or quality is common in natural waters, it appears less common or severe in estuaries where food concentrations are often high. San Francisco Estuary, California, has unusually low concentrations of chlorophyll compared to other estuaries. We measured egg production rates of three species ofAcartia, with dominate the zooplankton biomass at salinity above 15 psu, on 36 occasions during 1999–2002. Egg production was determined by incubating up to 40 freshly collected individual copepods for 24 h in 140 ml of ambient water. Egg production was less than 10 eggs female⁻¹ d⁻¹ most of the year, but as high as 52 eggs female⁻¹ d⁻¹ during month-long spring phytoplankton blooms. Egg production was a saturating function of total chlorophyll concentration with a mean of 30 eggs female⁻¹ d⁻¹ above a chlorophyll concentration of 12±6 mg chl m⁻³. We take chlorophyll to be a proxy for total food ofAcartia, known to feed on microzooplankton as well as phytoplankton. These findings, together with long-term records of chlorophyll, concentration and earlier studies of abundance of nauplius larvae in the estuary, imply chronic food limitation ofAcartia species, with sufficient food for maximum egg production <10% of the time over the last 25 yr. These results may show the most extreme example of food limitation of copepod reproduction in any temperate estuary. They further support the idea that estuaries may provide suitable habitat forAcartia species by virtue of other factors than high food concentration.     

Modeling Trophic Structure and Energy Flows in a Coastal Artificial Ecosystem Using Mass-Balance Ecopath Model

Using a large-scale enclosed sea area in northern Hangzhou Bay as a case study, the trophic interactions, energy flows, and ecosystem properties of a coastal artificial ecosystem were analyzed by ecotrophic modeling using Ecopath with Ecosim software (EwE, 5.1 version). The model consists of 13 functional groups: piscivorous fish, benthic-feeding fish, zooplanktivorous fish, herbivorous fish, crabs, shrimp, mollusca, infauna, carnivorous zooplankton, herbivorous zooplankton, macrophytes, phytoplankton, and detritus. Input information for the model was gathered from published and unpublished reports and from our own estimates during the period 2006–2007. Results show that the food web in the enclosed sea area was dominated by a detritus pathway. The trophic levels of the groups varied from 1.00 for primary producers and detritus to 3.90 for piscivorous fish in the coastal artificial system. Using network analysis, the system network was mapped into a linear food chain, and five discrete trophic levels were found with a mean transfer efficiency of 9.8% from detritus and 9.4% from primary producer within the ecosystem. The geometric mean of the trophic transfer efficiencies was 9.6%. Detritus contributed 57% of the total energy flux, and the other 43% came from primary producers. The ecosystem maturity indices—total primary production/total respiration, Finn’s cycling index, and ascendancy—were 2.56, 25.0%, and 31.0%, respectively, showing that the coastal artificial system is at developmental stage according to Odum’s theory of ecosystem development. Generally, this is the first trophic model of a large-scale artificial sea enclosure in China and provides some useful insights into the structure and functioning of the system.     

Trophic Links in the Plankton in the Low Salinity Zone of a Large Temperate Estuary: Top-down Effects of Introduced Copepods

We investigated trophic relationships involving microzooplankton in the low salinity zone of the San Francisco Estuary (SFE) as part of a larger effort aimed at understanding the dynamics of the food web supporting the endangered delta smelt, Hypomesus transpacificus. We performed 14 cascade experiments in which we manipulated the biomass of a copepod (Limnoithona tetraspina, Pseudodiaptomus forbesi, or Acartiella sinensis) and quantified responses of lower trophic levels including bacterioplankton, phytoplankton, and microzooplankton. Microzooplankton comprised a major food source for copepods; 9 out of 14 experiments showed removal of at least one group of microzooplankton by copepods. In contrast, the impact of copepods on phytoplankton was indirect; increased copepod biomass led to greater growth of phytoplankton in 3 of 14 experiments. Estimated clearance rates on microzooplankton were 4 mL day^?1 for L. tetraspina and 2–6 mL day^?1 for P. forbesi, whereas A. sinensis consumed mainly copepod nauplii. Complex trophic interactions, including omnivory, among copepods, microzooplankton, and different components of the phytoplankton likely obscured clear trends. The food web of the SFE is probably less efficient than previously thought, providing poor support to higher trophic levels; this inefficient food web is almost certainly implicated in the continuing low abundance of fishes, including the delta smelt that use the low salinity zone of the San Francisco Estuary.     

A Decade of Change in the Skidaway River Estuary. III. Plankton

The Skidaway River estuary, GA (USA), a tidally dominated subtropical system surrounded by extensive Spartina salt marshes, is experiencing steady increases in nutrients, chlorophyll, and particulate matter and decline in dissolved oxygen, associated with cultural eutrophication. A long-term study is documenting changes in these parameters: previous papers Verity (Estuaries 25:944–960, 2002a, Estuaries 25:961–975, b) reported on hydrography, nutrients, chlorophyll, and particulate matter during 1986–1996; plankton community responses are reported here. Phytoplankton, bacteria, heterotrophic nanoplankton and dinoflagellates, ciliates, and copepods exhibited strong seasonal cycles in abundance driven by temperature and resource availability, typically with summer maxima and winter minima. However, cultural eutrophication coincided with altered planktonic food webs as autotrophic and heterotrophic communities responded to increasing concentrations and changing ratios of inorganic and organic nutrients, potential prey, and predators. Small (<8 μm) photosynthetic nanoplankton increased in absolute concentration and also relative to larger cells. In contrast, diatoms did not show consistent increases in abundance, despite significant long-term increases in ambient silicate concentrations. Mean annual bacteria concentrations approximately doubled, and eukaryotic organisms in the microbial food web (heterotrophic and mixotrophic flagellates, dinoflagellates, ciliates, and metazoan zooplankton) also increased. All plankton groups except copepods showed trends of increasing annual amplitudes between seasonal high and low values, with higher peak concentrations each year. These observations suggest that the eutrophication signal was gradually becoming uncoupled from regulatory mechanisms. Theory and evidence from other more impacted waters suggest that, if these patterns continue, changes in the structure and function of higher trophic levels will ensue.     

Seasonal variation in food web composition and structure in a temperate tidal estuary

Seasonal variation in aquatic food web structure at Mad Island Marsh, Matagorda Bay, Texas, was examined using dietary information obtained from the analysis of gut contents from large samples of fish and crustacean specimens. Unique aspects of this study include the use of large samples of consumer gut contents (n=6,452), long-term sampling (bimonthly surveys over 18 mo), and standard methods of data collection and analysis facilitating comparisons with other aquatic food webs. Dietary data were partitioned for analysis into warm (summer) and cold (winter) seasons. Most consumers fed low in the food web, with trophic levels ranging from about 2 to 3.5 during both summer and winter. Vegetative detritus was more important in macroconsumer diets than live algae and macrophytes. Low trophic levels of consumers reflected the important role of abundant detritivores (e.g., striped mulletMugil cephalus, Gulf menhadenBrevortia patronum, and macroinvertebrates) in linking detritus to top predators via short food chains, a finding consistent with many other estuarine food web studies. Despite changes in community composition and population size structure of certain species, most food web properties revealed comparatively little seasonal variation. The summer food web had more nodes (86), more links (562), a higher density of links as indicated by connectance (0.08), and a slightly higher predator: prey ratio (0.51) compared to the winter food web (75 nodes, 394 links, connectance = 0.07, predator: prey ratio = 0.47). Proportions of top (0.06–0.07), intermediate (0.75–0.76), and basal (0.19) species did not vary significantly between seasons, but mean trophic level was higher during summer. Addition of feeding links based on information from the literature increased connectance to 0.13 during both seasons; other web parameters had values similar to those obtained for our directly estimated food webs. Seasonal variation in food web structure was influenced by changes in community composition (e.g., influxes of postlarval estuarine-dependent marine fishes during winter), availability of resources (e.g., more submerged macrophytes and amphipods during summer), and size structure and ontogenetic diet shifts of dominant consumer taxa. Our findings suggest that some basic properties of estuarine food web are resilient to seasonal changes in population and community structures and food web architecture.     

Organic Matter Sources Supporting Lower Food Web Production in the Tidal Freshwater Portion of the York River Estuary, Virginia

The Mattaponi River is part of the York River estuary in Chesapeake Bay. Our objective was to identify the organic matter (OM) sources fueling the lower food web in the tidal freshwater and oligohaline portions of the Mattaponi using the stable isotopes of carbon (C) and nitrogen (N). Over 3 years (2002–2004), we measured zooplankton densities and C and N stable isotope ratios during the spring zooplankton bloom. The river was characterized by a May–June zooplankton bloom numerically dominated by the calanoid copepod Eurytemora affinis and cladocera Bosmina freyi. Cluster analysis of the stable isotope data identified four distinct signatures within the lower food web: freshwater riverine, brackish water, benthic, and terrestrial. The stable isotope signatures of pelagic zooplankton, including E. affinis and B. freyi, were consistent with reliance on a mix of autochthonous and allochthonous OM, including OM derived from vascular plants and humic-rich sediments, whereas macroinvertebrates consistently utilized allochthonous OM. Based on a dual-isotope mixing model, reliance on autochthonous OM by pelagic zooplankton ranged from 20% to 95% of production, declining exponentially with increasing river discharge. The results imply that discharge plays an important role in regulating the energy sources utilized by pelagic zooplankton in the upper estuary. We hypothesize that this is so because during high discharge, particulate organic C loading to the upper estuary increased and phytoplankton biomass decreased, thereby decreasing phytoplankton availability to the food web.     

Long-Term Seasonal Trends in the Prey Community of Delta Smelt (<Emphasis Type="Italic">Hypomesus transpacificus</Emphasis>) Within the Sacramento-San Joaquin Delta,California

Abiotic factors and species introductions can alter food web timing, disrupt life cycles, and change life history expressions and the temporal scale of population dynamics in zooplankton communities. We examined physical, trophic, and zooplankton community dynamics in the San Francisco Estuary, California, a highly altered Mediterranean climate waterway, across a 43-year dataset (1972–2014). Before invasion by the suspension-feeding overbite clam (Potamocorbula amurensis) in the mid-1980s, the estuary demonstrated monomictic thermal mixing in which winter turbidity and cool temperatures contributed to seasonally low productivity, followed by a late-spring-summer clearing phase with warm water and peak phytoplankton blooms that continued into early winter. Following the clam invasion, we observed a shift in peak phytoplankton bloom timing, with peak productivity now occurring in May compared to June prior to the invasion. Peak abundance of several zooplankton taxa (Eurytemora affinis, Pseudodiaptomus, other calanoids, and non-copepods) also shifted to earlier in the season. We present the first evidence of a shift in the timing of peak abundance for zooplankton species that are key prey items of delta smelt (Hypomesus transpacificus), a federally threatened pelagic fish species. These timing shifts may have exacerbated well-documented food limitations of delta smelt due to declines in primary productivity since the invasion of the overbite clam. Future conservation efforts in the estuary should consider measures designed to restore the timing and magnitude of pre-invasion phytoplankton blooms.     

Long-term patterns in the diets of Japanese temperate bassLateolabrax japonicus larvae and juveniles in Chikugo estuarine nursery ground in Ariake Bay, Japan

Larval and juvenile Japanese temperate bass (Lateolabrax japonicus) samples were collected from a wide range of spatial gradients (covering a distance of approximately 30 km) in Chikugo estuary, Ariake Bay, Japan over a period of 8 yr (1997–2004) in order to observe changes in diet. Gut contents were studied by separating, identifying, counting, and estimating the dry weight of prey organisms. Copepod samples were collected during each cruise to observe the numerical composition, abundance, and biomass in the estuary. Considerable spatial and temporal variations were observed in copepod distributions in ambient water and the diets of the fish. Two distinctly different copepod assemblages were identified in the estuary: One in the upper estuarine turbidity maximum (ETM), dominated by a single speciesSinocalanus sinensis and the other in the lower estuary consisting of a multispecies assemblage, dominated byOithona davisae, Acartia omorii, Paracalanus parvus, andCalanus sinicus. The gut content composition of the fish in the upper estuary was dominated byS. sinensis, while in the lower estuary, it consisted ofP. parvus, O. davisae, andA. omorii. Within the size group analyzed (13.0–27.0 mm SL), the smaller individuals were found to feed on a mixed diet composed of smaller prey. The diets gradually shifted to bigger prey composed predominantly ofS. sinensis for larger size groups. Greater proportions of empty guts were recorded in the smaller individuals and dropped with increasing fish size. Higher dry biomass of copepods in the environment, as well as higher dry weights of gut contents, were recorded in the upper estuary, indicating that the upper estuarine ETM areas are important nursery grounds for the early life stages of the Japanese temperate bass. The early life stages of the Japanese temperate bass are adapted to use the upstream nursery grounds and ascending to the nursery areas to useS. sinensis is one of the key survival strategies of the Japanese temperate bass in the Chikugo estuary.     

Regional scale climate forcing of mesozooplankton dynamics in Chesapeake Bay

A 16-yr (1985–2000) time series of calanoid copepod (Acartia tonsa andEurytemora affinis) abundance in the upper Chesapeake Bay was examined for links to winter weather variability. A synthesis of sea level pressure data revealed ten dominant, winter weather patterns. Weather patterns differed in frequency of occurrence as well as associated precipitation and temperature. The two dominant copepod species responded differently to winter weather variability.A. tonsa abundance showed little response to winter weather and did not vary in abundance during wet or dry springs.E affinis responded strongly to winter weather patterns that produced springs with high freshwater discharge and low salinities. During wet springs,E. affinis abundance increased overall and its area of dominance extended further down estuary. The different response of the two species is likely related to several factors including residence time, development time, salinity tolerance, food limitation, and life history strategy. Important fish species that rely on zo oplankton as food resources were also related to winter weather variability and spring zooplankton abundance.Morone saxatilis (striped bass) andAnchoa mitchilli (bay anchovy) juvenile indices were positively and negatively correlated toE. affinis abundance, respectively. *** DIRECT SUPPORT *** A02BY003 00004     

Changes in plankton community structure and function in response to variable freshwater flow in two tributaries of the Chesapeake Bay

The biomass of phytoplankton, microzooplankton, copepods, and gelatinous zooplankton were measured in two tributaries of the Chesapeake Bay during the springs of consecutive dry (below average freshwater flow), wet (above average freshwater flow), and average freshwater flow years. The potential for copepod control of microzooplankton biomass in the dry and wet years was evaluated by comparing the estimated grazing rates of microzooplankton by the dominant copepod species (Acartia spp. andEurytemora affinis) to microzooplankton growth rates and by calculating the percent of daily microzooplanton standing stock removed through copepod grazing. There were significant increases in phytoplankton and copepod biomass, but not for microzooplankton biomass in the wet year as compared to the dry year. The ctenophoreMnemiopsis leidyi was present during the dry year but was absent during the sampling period of the wet and average freshwater flow years. Grazing pressure on microzooplankton was greatest in the wet year, withAcartia spp. andE. affinis ingesting 0.21–2.64 μg of microzooplankton C copepod⁻¹ d⁻¹ and removing up to 60% of the microzooplankton standing stock per day. In the dry year, these copepod species ingested 0.10–0.73 μg of microzooplankton C copepod⁻¹ d⁻¹ with a maximum daily removal of approximately 3% of the microzooplankton standing stock. Potential copepod grazing pressure was significantly less than microzooplankton growth in the dry year, but was equivalent to microzooplankton growth in the wet year, implying strong top-down control of the microzooplankton community in the wet year. These results suggest that increased grazing control of microzooplankton populations by more copepods in the wet year released top-down control of phytoplankton. Reduced microzooplankton grazing, in conjunction with increased nutrient availability, resulted in large increases in phytoplankton biomass in the wet year. Increased freshwater flow has the potential to influence trophic cascades and the partitioning of plankton production in estuarine systems.     

Contribution of allochthonous carbon to American shad production in the Mattaponi River,Virginia, using stable isotopes

Our objective was to quantify the contribution of autochthonous, locally-produced phytoplankton, and allochthonous, terrestrial-derived organic matter (OM) to the production of young-of-year (YOY) American shad(Alosa sapidissima) using stable isotopes. We measured the carbon and nitrogen stable isotope composition of YOY American shad in the tidal fresh water of the Mattaponi River, a tributary in the York River estuary, during three consecutive years. The isotopic ratios of larval American shad varied among years, indicating a switch from reliance on a primarily autochthonous food web pathway during low and moderate discharge years (50–90%; 2002, 2004) to a primarily allochthonous pathway during a high discharge year (< 35% phytoplankton; 2003). Reliance on phytoplankton by larval fish declined exponentially with increasing Mattaponi River discharge. In 2003, juvenile production was also supported by allochthonous OM, though autochthonous phytoplankton accounted for an increasingly large fraction during June through August, up to 40–55%. We also found a long-term, positive relationship between the duration of above average flow during April through June in the Mattaponi River and a corresponding index of juvenile American shad abundance. The largest American shad cohort recorded since 1967 was observed in 2003, a high discharge year. The production of this cohort was largely supported by allochthonous OM. The results suggest an important link between river discharge, energy flow, and recruitment, wherein high discharge favors reliance on terrestrial carbon by YOY American shad, owing to changes in zooplankton diet, macroinvertebrate abundance, or both, and also favors high American shad abundance.     

Selenium in San Francisco Bay zooplankton: Potential effects of hydrodynamics and food web interactions

The potential toxicity of elevated selenium (Se) concentrations in aquatic ecosystems has stimulated efforts to measure Se concentrations in benthos, nekton, and waterfowl in San Francisco Bay (SF Bay). In September 1998, we initiated a 14 mo field study to determine the concentration of Se in SF Bay zooplankton, which play a major role in the Bay food web, but which have not previously been studied with respect to Se. Monthly vertical plankton tows were collected at several stations throughout SF Bay, and zooplankton were separated into two operationally defined size classes for Se analyses: 73–2,000 μm, and ≥2,000 μm. Selenium values ranged 1.02–6.07 μg Se g^?1 dry weight. No spatial differences in zooplankton Se concentrations were found. However, there were inter- and intra-annual differences. Zooplankton Se concentrations were enriched in the North Bay in Fall 1999 when compared to other seasons and locations within and outside SF Bay. The abundance and biovolume of the zooplankton community varied spatially between stations, but not seasonally within each station. Smaller herbivorous-omnivorous zooplankton had higher Se concentrations than larger omnivorous-carnivorous zooplankton. Selenium concentrations in zooplankton were negatively correlated with the proportion of total copepod biovolume comprising the large carnivorous copepodTortanus dextrilobatus, but positively correlatid with the proportion of copepod biovolume comprising smaller copepods of the family Oithonidae, suggesting an important role of trophic level and size in regulating zooplankton Se concentrations.     

Diet of winter flounder in a New Jersey estuary: Ontogenetic change and spatial variation

Juvenile and adult winter flounder,Pseudopleuronectes americanus Walbaum (Pleuronectidae), from the Navesink River and Sandy Hook Bay, New Jersey, U.S., were examined for ontogenetic, seasonal, and spatial variation in dietary content. Fish (n=1291 non-empty) were placed by cluster analysis of dietary content into three size groups: 15–49, 50–299, and ≥300 mm total length. Clear ontogenetic patterns were revealed, in particular the disappearance of calanoid copepods from the diet as fish grew >50 mm and an increase in number of taxa in the diet with growth. Fish in size group 1 fed upon spionid polychaetes, the calanoid copepodEurytemora affinis, and ampeliscid amphipods. Fish in size group 2 added various species of polychaetes, amphipods, and siphons of the bivalveMya aremaria to their diets. Size group 2 was present during all months of the survey, but only minor seasonal differences in their diet were apparent. One obvious change was the increase in consumption of the shrimpCrangon septemspinosa in summer and fall. Size group 3 fish, collected mainly in fall, ate large volumes ofM. arenaria and glycerid polychaetes. Cluster analysis showed a largescale spatial pattern in diet among fish of size group 1, related to the presence ofE. affinis in winter flounder diets in the river and a marsh cove in the bay. Small-scale spatial differences in diets of fish in size group 2 were possibly related to prey distribution.     

Turbidity Maximum Entrapment of Phytoplankton in the Chesapeake Bay

Estuarine turbidity maxima (ETM) play an important role in zooplankton and larval fish productivity in many estuaries. Yet in many of these systems, little is known about the food web that supports this secondary production. To see if phytoplankton have the potential to be a component of the ETM food web in the Chesapeake Bay estuary a series of cruises were carried out to determine the biomass distribution and floral composition of phytoplankton in and around the ETM during the winter and spring using fluorometry, high-performance liquid chromatography (HPLC), and microscopy. Two distinct phytoplankton communities were observed along the salinity gradient. In lower salinity waters, biomass was low and the community was composed mostly of diatoms, while in more saline waters biomass was high and the community was composed mostly of mixotrophic dinoflagellates, which were often concentrated in a thin layer below the pycnocline. Phytoplankton biomass was always low in the ETM, but high concentrations of phytoplankton pigment degradation products and cellular remains were often observed suggesting that this was an area of high phytoplankton mortality and/or an area where phytoplankton derived particulate organic matter was being trapped. These results, along with a box model analysis, suggest that under certain hydrodynamic conditions phytoplankton derived organic matter can be trapped in ETM and potentially play a role in fueling secondary production.     

The Role of Protistan Microzooplankton in the Upper San Francisco Estuary Planktonic Food Web: Source or Sink?

Decline of native pelagic species in estuarine systems is an increasing problem, especially for native fishes in the San Francisco Estuary and Delta (SFE-D). Addressing these losses depends on understanding trophodynamics in the food web that supports threatened species. We quantified the role of microzooplankton (heterotrophic–mixotrophic protists <200 μm) in the food web of the upper SFE-D. We sampled protist plankton abundance and composition at two sites (Suisun Bay and Grizzly Bay) approximately monthly from February 2004 to August 2005 and conducted dilution experiments during spring and summer of both years in Suisun Bay. Heterotrophs dominated the protist community in Suisun Bay and Grizzly Bay, particularly in the <20 μm size range, and peaks in protistan microzooplankton biomass were associated with high phytoplankton biomass. In both years, microzooplankton grazing rates were high (0.5–0.7 day⁻¹) during the spring and lower (~0.2 day⁻¹) during summer. Phytoplankton growth rates peaked in April 2004 (~0.7 day⁻¹) but were much lower (<0.1 day⁻¹) in spring 2005, despite relatively high abundance. Thus, microzooplankton grazing consumed as much as 73% of phytoplankton standing stock during spring and ~15% of standing stock during summer of both years. Combined with earlier results, we conclude that microzooplankton can be important mediators of carbon and energy flow in the upper SFE-D and may be a “source” to the metazoan food web.     

Seasonal Variation in Guild Structure of the Puget Sound Demersal Fish Community

Identification of food web linkages is a major aim in ecology because it provides basic information on trophic flows and the potential for interspecific interactions. In addition, policy and restoration measures mandated to conform to ecosystem-based management principals can benefit from information on temporal and spatial variability in community-level interactions. Here, we analyzed guild structure of the demersal fish assemblage in Puget Sound, WA, a temperate estuarine system on the US west coast. Using diet information from 2,401 stomachs collected across three seasons (fall, winter, and summer), we identified guild membership for 21 fish species, examined seasonal guild switching, and tested for seasonal shifts in predation and for differences in the degree of diet overlap at the assemblage level. We accounted for ontogenetic variation in diet by dividing species into large (L) and small (S) size classes when appropriate. Using cluster analysis and a permutation approach, we identified seven significant guilds that were typified by predation on benthic invertebrates, pelagic invertebrates, and piscivory. Of the 18 species with more than one season of diet information, six switched guilds (Pacific sanddab L, sturgeon poacher, Pacific tomcod S, speckled sanddab, rex sole, and rock sole S). At the assemblage level, we tested for seasonal differences in prey use between seasons by performing an analysis of similarities based on Bray–Curtis diet similarities and found no significant difference. However, diet overlap was significantly higher in the summer than the fall and winter (with summer > fall > winter) indicating that diets within the assemblage converged in the summer. These results indicate that analyses of guild structure and diet overlap can reveal seasonal variation in community trophic structure and highlight intra-annual food web variation in the Puget Sound demersal fish community.     

Short-Term and Interannual Variability in Primary Production in the Low-Salinity Zone of the San Francisco Estuary

We measured primary production during spring?Csummer 2006?C2007 to determine the carbon supply to the low-salinity pelagic food web of the San Francisco Estuary (SFE). Weekly or biweekly samples were taken at three stations of fixed salinity for size-fractionated primary production and biomass, both as chlorophyll and from biovolume based on counts. Error variance in productivity estimates arose mainly from the depth integration of ¹⁴C uptake, showing the importance of productivity measurements at high light levels for estimates of depth-integrated production. Temporal and spatial variability in production were surprisingly small. Combining data from this study with long-term monitoring data, productivity and biomass were variable in time and salinity but without persistent patterns and with infrequent blooms. Production within the low-salinity zone was unresponsive to variation in freshwater flow, in contrast to findings in other estuaries where nutrient loading drives variability in production and other regions of the SFE where production responds to residence time or to stratification. Estimated annual primary production was only 25 and 31?g?C?m^?2?year^?1 during 2006 and 2007, only half of it in cells >5???m. These results imply that phytoplankton provided poor food web support for higher trophic levels, probably contributing to the long-term decline in fish abundance in the brackish to freshwater region of the estuary.