Habitat associations of estuarine species: Comparisons of intertidal mudflat, seagrass (Zostera marina), and oyster (Crassostrea gigas) habitats

The complexity of habitat structure created by aquatic vegetation is an important factor determining the diversity and composition of soft-sediment coastal communities. The introduction of estuarine organisms, such as oysters or other forms of aquaculture, that compete with existing forms of habitat structure, such as seagrass, may affect the availability of important habitat refugia and foraging resources for mobile estuarine fish and decapods. Fish and invertebrate communities were compared between adjacent patches of native seagrass (Zostera marina), nonnative cultured oyster (Crassostrea gigas), and unvegetated mudflat within a northeastern Pacific estuary. The composition of epibenthic meiofauna and small macrofaunal organisms, including known prey of fish and decapods, was significantly related to habitat type. Densities of these epifauna were significantly higher in structured habitat compared to unstructured mudflat. Benthic invertebrate densities were highest in seagrass. Since oyster aquaculture may provide a structural substitute for seagrass being associated with increased density and altered composition of fish and decapod prey resources relative to mudflat, it was hypothesized that this habitat might also alter habitat preferences of foraging fish and decapods. The species composition of fish and decapods was more strongly related to location within the estuary than to habitat, and fish and decapod species composition responded on a larger landscape scale than invertebrate assemblages. Fish and decapod species richness and the size of ecologically and commercially important species, such as Dungeness crab (Cancer magister), English sole (Parophrys vetulus), or lingcod (Ophiodon elongatus), were not significantly related to habitat type.