Phytoplankton biomass, cell diameter, and species composition in the low salinity zone of Northern San Francisco Bay estuary

Phytoplankton chlorophyll a concentration, biovolume, cell diameter, and species composition differed across the narrow, low salinity zone between 0.6‰ to 4‰ and may influence copepod food availability in the northern San Francisco Bay Estuary. The highest chlorophyll a concentrations (range 3.2–12.3 μg 1^?1), widest cell diameters (>5 μm diam), highest diatom densities and highest production rates of >10 μm diam cells occurred at the landward edge of the salinity zone in April during a strong spring tide and May during a strong neap tide. Near optimum predator/prey ratios, large prey estimated spherical diameters, and high chlorophyll a concentrations suggest these phytoplankton communities provided good food quantity and quality for the most abundant copepods, Eurytemora affinis, Sinocalanus doerrii, and Pseudodiaptomus forbesi. At the center of the zone, chlorophyll a concentrations, diatom densities, and production rates of >10 μm diam cells were lower and cell diameters were smaller than upstream. Downstream transport was accompanied by accumulation of phytoplankton with depth and tide; maximum biomass occurred on spring tide. The lowest chlorophyll a concentrations (1.4–3.6 μg 1^?) and consistently high densities (3,000–4,000 cells ml^?1) of <5 μm diam cells occurred at the seaward edge of the zone, where the green alga Nannochloris spp. and the bluegreen alga Synechococcus spp. were the most abundant phytoplankton. Low chlorophyll a concentrations and production rates of >10 μm diam cells, small prey estimated spherical diameters, and high predator/prey ratios suggested the seaward edge of the zone had poor phytoplankton food for copepodids and adult copepods. The seaward decrease in phytoplankton chlorophyll a concentration and cell diameter and shift in species composition in the low salinity zone were probably a function of an estuary-wide decrease in chlorophyll a concentration, cell diameter, and diatom density since the early 1980s that was enhanced in the low salinity zone by clam herbivory after 1987. *** DIRECT SUPPORT *** A01BY090 00008