Instrument development to search for biomarkers on mars: Terrestrial acidophile, iron-powered chemolithoautotrophic communities as model systems

Recent findings by the MER rover opportunity confirming the presence of iron minerals that can only be formed in the presence of water emphasize the study of analogous environments to Mars on Earth. The study of chemolithoautotrophic communities living in acidic iron-rich habitats is highly relevant in order to identify Mars analog environment-specific biomarkers. Iron oxidizing bacteria like Leptospirillum ferrooxidans and Acidithiobacillus ferrooxidans have ways of life for which it is feasible to identify a past or present hypothetical niche on Mars. We have developed a strategy for biomarker identification based on: (i) search for biosignatures on acid and metal-rich environments; (ii) development of an immunosensor microarray; and (iii) integration into an instrument for autonomous and remote operation. The instrument that we have built, called Signs Of LIfe Detector (SOLID), is capable of processing a variety of samples for the detection of specific biomarkers. Antibodies against several bacterial strains have been developed and tested in a microarray biosensor on SOLID. Tests with field samples have been successfully performed, allowing the detection of L. ferrooxidans, A. ferrooxidans present in sediment samples.     

浅析宁波盆地膏盐地层的时代──兼对“宁波盆地北部的长河群”之时代质疑

宁波盆地地下揭示的一套包含暗色膏硝质泥岩、泥质白云岩在内的紫红、灰紫色泥岩、棕褐色砂砾岩、细砂岩和玻屑凝灰岩的地层，均称方岩组，内含膏盐并具油色显示。对其时代有早、晚白垩世和早第三纪之认识，笔者从70～90年代地质工作中所获化石分析认为，虽然宁波盆地这一层位含化石不丰，但从分布及数量上比较，相对占优势的应该是孢粉和植物化石，其时代意见也较为一致，指示为早白垩世。     

The middle pleistocene deposits of Waverley Wood Pit,Warwickshire, England

A complex of channels underlying the Baginton-Lillington Gravel (Baginton Formation) at Waverley Wood Quarry, Warwickshire is described. Fossil pollen and plant macrofossils, Coleoptera, Ostracoda, Mollusca and Mammalia are described from the channel-fill deposits. Consideration of all the evidence allows the identification of four separate stages of channel fill which largely occurred under a cool temperate climate. At the top of Channel 2 evidence for a cold, continental climatic episode can be recognised, suggesting that the whole complex was deposited under a fluctuating climate at the end of a temperate stage. At two levels in the channels human artefacts were recovered confirming the presence of Palaeolithic people in Warwickshire during the deposition of the sediments. Amino-acid geochronology suggests an age within the ‘Cromerian Complex’ Stage for the channels. The small vertebrate and molluscan faunas indicate that the deposits are no older than the latter part of the ‘Cromerian Complex’ Stage of East Anglia. The regional stratigraphic significance of the Waverley Wood succession is outlined.     

The influence of macrophyte growth,typical of eutrophic conditions,on river flow velocities and turbulence production

The influence of emergent and submerged macrophytes on flow velocity and turbulence production is demonstrated in a 140 m reach of the River Blackwater in Farnborough, Hampshire, UK. Macrophyte growth occurs in patches and is dominated by Sparganium erectum and Sparganium emersum. In May 2001, patches of S. erectum were already established and occupied 18% of the channel area. The flow adjusted to these (predominantly lateral) patches by being channelled through a narrower cross‐section. The measured velocity profiles showed a logarithmic form, with deviations attributable to topographic control. The channel bed was the main source of turbulence. In September 2001, in‐stream macrophytes occupied 27% of the channel, and overhanging bank vegetation affected 32% of the area. Overall flow resistance, described by Manning's n, showed a threefold increase that could be attributed to the growth of S. emersum in the middle of the channel. Velocity profiles showed different characteristic forms depending on their position relative to plant stems and leaves. The overall velocity field had a three‐dimensional structure. Turbulence intensities were generally higher and turbulence profiles tended to mirror the velocity profiles. Evidence for the generation of coherent eddies was provided by ratios of the root mean square velocities. Spectral analysis identified deviations from the Kolmogorov ?5/3 power law and provided statistical evidence for a spectral short‐cut, indicative of additional turbulence production. This was most marked for the submerged vegetation and, in some instances, the overhanging bank vegetation. The long strap‐like leaves of S. emersum being aligned approximately parallel to the flow and the highly variable velocity field created by the patch arrangement of macrophytes suggest that the dominant mechanism for turbulence production is vortex shedding along shear zones. Wake production around individual stems of S. emersum close to the bed may also be important locally. Copyright © 2006 John Wiley & Sons, Ltd.     

中国对虾育苗池和养成池微型污着生物群落的研究

于１９９２年４－１０月在山东省青岛市黄岛前湾育苗场和胶南市红石崖镇邵家村养殖场，采用载玻片挂片和对中国对虾现场取样的方法，研究中国对虾育苗池和养成池载玻片挂 表面和对体表微型污着生物群落的组成和发展。     

A case study of mollusc and polychaete soft-bottom assemblages submitted to sedimentary instability in the Mediterranean Sea

In the Strait of Messina (Sicily, Central Mediterranean Sea) strong tidal currents, very irregular hydrological regime and related solid load, and local seismic activity cause sediment instability; this area represents therefore a case‐study of a naturally disturbed soft‐bottom environment. In this paper, mollusc and polychaete assemblages of the northern part of the Strait were described. Composition, community structure, eco‐ethological features, trophic guilds and sediment‐type relationships were studied in 64 stations sampled located between 3.5 and 50 m depth in October 1992 by means of a Van Veen grab. A total of 131 species (65 molluscs and 66 polychaetes) were identified. A dense population of the tubicolous polychaete Ditrupa arietina was recognized, together with the occurrence of other species tied to a high sedimentation rate, such as Corbula gibba and Tellina distorta, as well as widespread, mud‐tolerant species (e.g.Chone spp., Hyalinoecia tubicola). Diversity (H′) showed a peak at intermediate depths (10/20 m) and a clear decrease beyond this depth, corresponding to the Ditrupa core population. Multivariate comparison between sediment features and community composition throughout the bathymetric gradient showed a narrow ecocline between two environments subjected to opposite hydrodynamic constraints. In the shallower zone, a wide typology of trophic‐ethological guilds was related to community patchiness, in contrast to a greater functional uniformity of the deeper assemblage, dominated by sessile, semi‐infaunal suspension feeders. A possible role played by a phase of increased rainfall to increase bottom instability, locally emphasized by a previous human activity, is also discussed.     

Analysis, synthesis and modelling of high-resolution observations of salt-marsh eco-geomorphological patterns in the Venice lagoon

The present paper describes observations, analyses and models of salt-marsh channel network and vegetation patterns with the aim of contributing to the development of predictive models of ecological and morphological co-evolution. Existing and new observations are described, with particular emphasis on remote sensing and ancillary field surveys, which are shown to allow reliable, accurate and repeatable quantitative characterizations of landform and vegetation properties over the spatial scales of interest. The observed channel network morphological characters are then used as the basis and validation of models describing the emergence of channel network and vegetation spatial patterns. In particular, with reference to observations performed in the Venice Lagoon, the note describes: (i) new, 2-cm resolution, characterizations of channel network geometry obtained from “proximal sensing” photographic observations; (ii) the reliable quantitative maps of salt-marsh vegetation which may be retrieved from hyperspectral remote sensing data and field ancillary observations; (iii) a synthesis of recent and new analyses of the statistical properties of vegetation and landform spatial organization, that may be inferred from the maps so derived; (iv) recent and new conceptual and quantitative ecological and geomorphic models developed and validated by remote-sensing and field observations. A coherent observational and theoretical eco-morphodynamic framework is then proposed.     

Shallow-Water Gasohydrothermal Vents of Ushishir Volcano and the Ecosystem of Kraternaya Bight (The Kurile Islands)

Abstract. A marine ecosystem in the crater of the Ushishir Volcano (Kraternaya Bight, Yankich Island, the Kuriles) showing gasothcrmal activity was studied for hydrographical, hydrochemical, and biological characteristics. Maximal changes in chemical and biological characteristics were observed in the surface water layer of 0–5 m. This layer had higher water temperature, was saturated with volcanogcnic carbon dioxide (up to 2000 10^-6 torr), ovcrsaturatcd with oxygen (up to 200 %), and contained high concentrations of chlorophyll a. Hydrogen sulfide was found in the surface water layer and at a depth of 15 m in the area of maximal effect of volcanic effluents.
The planktonic community is characterized by high rates of production and destruction of organic matter only in the 0–5 m layer. Daily vertical migrations of the ciliatc Mesodinium rubrum were observed, which caused "red tides".
Bacterial, algobacterial, and diatom mats developed on the bottom of the bight in the zone of gasohydrothermal vents and in areas of volcanic water seeping. The rate of organic matter production in algobacterial mats reached 33.4g C-rrr²-d^-l, chcmolithotrophy predominating. Bottom settlements had high population density and great animal biomass, which reached 10 kg m^-2 in gasohydrothermal fields. They obtain sufficient energy from primary production of microphy-tobenthos, algobacterial, and bacterial mats. Bcnthic species dominant in the bight were not found off the Ushishir Islands.
Some species of macrobenthos inhabiting the Kraternaya Bight differ markedly in size and biomass from the same species found beyond the bight.     

海桑属红树植物遗传多样性和引种关系研究

以海南东寨港红树林自然保护区内无瓣海桑(Sonneratia apetala)、海南海桑(S.hainanensis)、拟海桑(S.paracaseolaris)、杯萼海桑(S.abla)、大叶海桑(S.ovata)、海桑(S.caseolaris)等6种海桑属红树植物为材料,对15个有效引物进行RAPD分析,共扩增出512条带,其中多态性条带为297,占总扩增条带的58.01%.Nei指数法分析和UPGMA统计分析表明,6种海桑属红树植物分为A,B,C3个组,平均遗传距离为0.38.A组包括无瓣海桑、海南海桑、大叶海桑、怀萼海桑,其中无瓣海桑、海南海桑、大叶海桑处于同一个亚组.B组包括拟海桑.C组包括海桑.对海南和福建无瓣海桑种群进行RAPD分析.对Shannon表型多样性指数统计结果表明,福建种群为0.669,海南种群为0.671,各种群遗传变异较大,这与无瓣海桑种群广泛的适应性相一致.对种群间的Shannon表型多样性指数分析表明,种群内的遗传变异占整个遗传变异的93.3%,而种群间的遗传变异仅占6.7%.这表明无瓣海桑种群的大部分遗传变异存在于种群内,而种群间的遗传变异较小.由此可见,无瓣海桑基因组丰富的多样性,是使其由海南成功引种到福建的重要因素.