Abundance and degree of residency of humpback dolphins Sousa plumbea in Mossel Bay,South Africa

Indian Ocean humpback dolphins Sousa plumbea inhabit nearshore waters from South Africa to eastern India. Humpback dolphins are vulnerable to conservation threats due to their naturally small population sizes and use of nearshore habitats, where human activities are highest. We investigated the abundance and residency of this species inhabiting Mossel Bay, South Africa, using photographic mark-recapture. Data were collected during 81 surveys in Mossel Bay between 2011 and 2013. Open population modelling using the POPAN parameterisation produced a ‘super-population’ estimate of 125 individuals (95% CI: 61–260) and within-year estimates of between 33 and 86 individuals (2011: 71 [95% CI: 30–168]; 2012: 33 [15–73], 32 [15–70]; 2013: 46 [20–108]). Although less appropriate, closed capture models were also run for comparison with previous studies in the region and generated similar, but slightly smaller, population estimates within each year. We compared our catalogue with opportunistic data collected from East London, Plettenberg Bay, De Hoop and Gansbaai. The only catalogue matches attained were between Plettenberg Bay (n = 44 identified) and Mossel Bay (n = 67 identified), separated by 140?km. Population exchange was moderate, with nine individuals resighted in multiple years between these two areas. This study supports previous findings of long-range movements for this species and provides a baseline from which to assess future impacts on the population.     

Multi-stakeholder collaboration yields valuable data for cetacean conservation in Gamba,Gabon

Private industry, the Government of Gabon and two international NGOs collaborated to conduct marine surveys off the coast of Gabon, Central Africa. Surveys addressed multiple objectives of surveillance and monitoring, the documentation of the distribution of and threats to the marine megafauna, and capacity-building among government agents and local early-career scientists. During 22 days of survey effort over a two-year period, observers documented humpback whales Megaptera novaeangliae, bottlenose dolphins Tursiops truncatus, Atlantic humpback dolphins Sousa teuszii and common dolphins Delphinus delphis. Humpback whale presence was limited to the months of July to November. Bottlenose dolphins were present year-round and photo-identification of individuals indicated a closed, resident population, with an abundance estimate of 118 (CV = 21.6%, 95% CI 78–180). Small open-decked fishing vessels with gillnets were observed concentrated around river mouths within 2 km of shore, while commercial trawlers were at least 10 km offshore; all were confirmed to be registered and legal. Observations of marine turtles, flocks of marine birds, and floating logs and other debris were sparse. This multi-stakeholder collaboration to conduct a marine survey can serve as an effective model by which funding and logistic support from private industry paired with technical expertise from NGOs and academic institutions can benefit marine and coastal conservation.     

Bottlenose dolphin Tursiops truncatus group dynamics,site fidelity,residency and movement patterns in the Madeira Archipelago (North-East Atlantic)

The bottlenose dolphin Tursiops truncatus is one of the most frequently sighted cetacean species in the Madeira Archipelago (North-East Atlantic); however, little is known about its population ecology in these waters. Photo-identification undertaken during systematic, non-systematic and opportunistic surveys conducted between 2001 and 2012 was used to assess group dynamics, site fidelity, residency and movement patterns of bottlenose dolphins in the archipelago. Three different patterns of residency were assigned, based on individual sighting histories. Group size ranged between 2 and 90 individuals (median 12), with no significant monthly difference in group size. All resident dolphins formed a core, complex network with migrant and transient dolphins. In contrast, satellite clusters were formed exclusively by transient individuals. The lagged identification rate (LIR) model indicated that a dolphin remained in the area for an average of 90 days, whereas the average time an individual spent outside the study area was approximately 313 days. The Madeira Archipelago appears to be only a section of a much larger home range for this population, with the dolphins exhibiting three different patterns of occurrence that associate with each other. The information gained about this poorly studied population contributes to the overall knowledge of bottlenose dolphins in insular oceanic habitats.     

GIS Investigation of the relationship of sex and season on the population distribution of common bottlenose dolphins (Tursiops truncatus) in Charleston,South Carolina

ABSTRACT

The Charleston Estuarine System Stock (CESS) of common bottlenose dolphins (Tursiops truncatus) has been the focus of population monitoring for the past 20 years. Photo-id studies have determined abundance and survival estimates for this population, which exhibits high site fidelity in this area. However, fine-scale distribution, utilization patterns, and the driving forces behind these patterns are lacking. Using historical photo-id data and a novel application of geographic information system (GIS) analysis, the present study identified core use areas within Charleston Harbor, as well as patterns specific to sexes and seasons. Photo-id data of 319 dolphins sighted 11 times or more during 2004–2009 were analyzed. Heat maps were developed to examine spatial distributions using kernel density estimates (KDE) and were compared between sexes and seasons. Multiple high-density core use areas were identified for this population, with the most noteworthy near the mouth of the harbor toward the Atlantic Ocean. Fine-scale distribution varied across sexes, as well as seasons. Some areas were identified as more specifically inhabited by one sex, while other areas overlapped between sexes. Females were more tightly concentrated within their distribution while males were more dispersed. Although population distribution varied across seasons, sex distributions remained.     

A computer-aided framework for subsurface identification of white shark pigment patterns

Subsurface video footage can be used as a successful identification tool for various marine organisms; however, processing of such information has proven challenging. This study tests the use of automated software to assist with photo-identification of the great white shark Carcharodon carcharias in the region of Gansbaai, on the south coast of South Africa. A subsurface photo catalogue was created from underwater video footage. Single individuals were identified by using pigmentation patterns. From this catalogue, two images of the head for each individual were inserted into automated contour-recognition software (Interactive Individual Identification System Beta Contour 3.0). One image was used to search the database, the other served as a reference image. Identification was made by means of a contour, assigned using the software to the irregular border of grey and white on the shark's head. In total, 90 different contours were processed. The output provided ranks, where the first match would be a direct identification of the individual. The method proved to be accurate, in particular for high-quality images where 88.24% and 94.12%, respectively, were identified by two independent analysts as first match, and with all individuals identified within the top 10 matches. The inclusion of metadata improved accuracy and precision, allowing identification of even low-quality images.     

Spinner dolphins Stenella longirostris off south-west Mauritius: abundance and residency

Spinner dolphins Stenella longirostris longirostris off the south-west coast of Mauritius are subject to ongoing anthropogenic disturbance in the form of daily dolphin tourism, which has intensified since 1998. Abundance of this species was estimated using photo-identification data and mark-recapture analysis. Between April 2008 and June 2010, identification photographs were collected from dolphins occurring along a 30 km length of the coast of south-west Mauritius. A total of 250 groups were encountered over 229 survey days. Mark-recapture analyses were performed on a photographic dataset of more than 8 000 good- and excellent-quality images and 83 animals were identified as distinctively marked individuals. The majority (85.5%) were seen more than once and resightings indicated a resident population. The compiled version of SOCPROG 2.4 was used to investigate the lagged identification rate. The fitted model supported a mostly resident population with additional animals moving in and out of the study area. The estimated abundance of the total population in the study area ranged between 138 and 399 individuals. Our results can be used for monitoring the population for fluctuations and for encouraging both the enforcement of laws regarding dolphin watching and the development of further means of management needed to ensure the long-term presence of this population.     

Abundance of fin whales (Balaenoptera physalus) in the north-western Mediterranean Sea,using photo-identification and microsatellite genotyping

The Mediterranean fin whale population, Balaenoptera physalus, is resident, with almost no exchanges with the Atlantic population. The entire population was estimated at 1300 or 13,300 individuals by a recent project depending on the platform used. This disparity shows the importance of long-term monitoring with a unique protocol of survey. Capture-recapture approaches using dorsal photographs and genetic identity collections over a 10 years period were used to estimate the abundance of the north-western Mediterranean fin whale. We identified 332 individuals using photographs and 470 using genotypes, with a total of 546 individuals identified between 2008 and 2019, when some whales were double-marked. The inter-annual percentage of recapture varied between 15% and 17% respectively for genotypes and photographs methods. Using Cormack-Jolly-Seber models, the abundance of fin whales in the north-western Mediterranean is estimated at 1295 individuals (95% CI: 1116–1474) with a survival probability of 0.945 (95% CI: 0.690–0.993) from genotypes. Abundance estimates from combined collections (photographs and genotypes) and corrected photograph estimates were similar to the genetic ones. Future studies might prioritize the genetic approach which is the least biased and with a narrower confidence interval. The genetic abundance estimates show relative stability over time, when compared to 1990 estimates, and should be included in future conservation actions.     

Abundance estimates of an isolated population of common bottlenose dolphins Tursiops truncatus in Walvis Bay,Namibia, 2008–2012

The coastal population of common bottlenose dolphins Tursiops truncatus found in Namibia is regionally isolated and unique. This population faces several potential anthropogenic threats, especially in Walvis Bay, including boat-based tourism, a commercial harbour undergoing expansion, and aquaculture for oysters and mussels. Between 2008 and 2012, 238 boat-based surveys were conducted, resulting in 170 encounters with bottlenose dolphins. Overall, group sizes varied from 1 to 45 individuals (mean 10.7). Encounter rates, group sizes and total numbers of animals identified were higher in winter than in summer field seasons. The number, and survival and immigration parameters, of bottlenose dolphins using Walvis Bay was investigated using robust design and Huggins closed-population mark-recapture models. The highest numbers estimated were in the first and last years of the study, with estimates of 74–82 in 2008 and 76–77 in 2012 (numbers identified and upper 95% confidence limits). The only previously available data, from an incomplete study in the early 1990s, suggested that the population was between 100 and 150 individuals at the time. Although no linear trend in population size was obvious during the current study, the clear evidence of isolation, small population size, low annual birth rate, and potential long-term decrease in numbers since the early 1990s is concerning. Further work to collect data on demographic parameters is urgently recommended with a view to obtaining increased protection for this species.     

Observations of individual humpback whales utilising multiple migratory destinations in the south-western Indian Ocean

Movements of humpback whales Megaptera novaeangliae among breeding regions within the southwestern Indian Ocean are poorly understood. Understanding the relationships among breeding regions is critical for effective conservation and management strategies. Through systematic comparisons of molecular genotypes and both systematic and non-systematic comparisons of individual identification photographs collected between 1996 and 2006, we have thus far identified nine whales (six males and three females) utilising two breeding areas within this region: the northern Mozambique Channel and eastern Madagascar. Four of the nine whales were recaptured using only photographic data, two whales were independently recaptured using both photographic and genetic data, and three whales were recaptured exclusively using molecular methods. The discovery of these nine individuals provides much-needed data to guide the formulation and future revision of stock boundaries.     

Transit station or destination? Attendance patterns,movements and abundance estimate of humpback whales off west South Africa from photographic and genotypic matching

Humpback whales Megaptera novaeangliae found off west South Africa (WSA) are known to display an atypical migration that may include temporary residency and feeding during spring and summer. At a regional scale there is uncertainty about how these whales relate to the greater West African Breeding Stock B as a whole, with evidence both for and against its division into two substocks. A database containing sighting information of humpback whales intercepted by boat in the WSA region from 1983 to 2008 was compiled. It included a total of 1 820 identification images of ventral tail flukes and lateral views of dorsal fins. After systematic within- and between-year matching of images of usable quality, it yielded 154 different individuals identified by tail flukes (TF), 230 by left dorsal fins (LDF), and 237 by right dorsal fins (RDF). Microsatellite (MS) matching of 216 skin biopsies yielded 156 individuals. By linking all possible sightings of the same individuals using all available identification features, the periodicity and seasonality of 281 individual whales were examined. In all, 60 whales were resighted on different days of which 44 were between different calendar years. The most resightings for one individual was 11 times, seen in six different years, and the longest interval between first and last sightings was about 18 years. A resighting rate of 15.6% of whales at intervals of a year or more indicates long-term fidelity to the region. Shorter intervals of 1–6 months between sequential sightings in the same year may suggest temporary residency. The TF image collection from WSA was compared to TF collections from four other regions, namely Gabon, Cabinda (Angola), Namibia and the Antarctic Humpback Whale Catalogue (AHWC). Three matches were detected between WSA (in late spring or summer) and Gabon (in winter), confirming direct movement between these regions. The capture–recapture data of four different identification features (TF, RDF, LDF and MS) from six successive subsets of data from periods with the highest collection effort (2001–2007) were used to calculate the number of whales that utilise the region, using both closed- and open-population models. Dorsal fins have never been used to estimate abundance for humpback whales, so the different identification features were evaluated for potential biases. This revealed 9–14% incidence of missed matches (false negatives) when using dorsal fins that would result in an overestimate, whereas variation in individual fluke-up behaviour may lower estimates by as much as 57–66% due to heterogeneity of individual capture probability. Taking into consideration the small dataset and low number of recaptures, the most consistent and precise results were obtained from a fully time-dependent version of the Jolly-Seber open-population model, with annual survival fixed at 0.96, using the MS dataset. This suggests that the WSA feeding assemblage during the months of spring and summer (September–March) of the study period numbered about 500 animals. The relationship of these whales to those (perhaps strictly migratory) that may occur in other seasons of the year, and their links to possible migratory routes and other feeding or breeding areas, remain uncertain.