Seasonal DOC accumulation in the Black Sea: a regional explanation for a general mechanism

During three cruises in the Black Sea, organised in July 1995 and April–May 1997, biological and chemical parameters that can influence the carbon budget were measured in the water column on the NW shelf, particularly in the mixing zone with Danube River waters. We observed in early spring (end of April–May) conditions an important input of freshwater organisms that enhanced the microbial activity in the low salinity range. High bacterial activity regenerates nitrogen in the form of nitrates, but is also responsible for an important consumption of ammonium and phosphate, leading to a high N/P ratio and a strong deficit in phosphorus. The consequence is a limitation of phytoplankton development but also a production of carbohydrates that accumulate all along the salinity gradient. These mechanisms are responsible for a seasonal accumulation of dissolved organic carbon (DOC) that increases from 210 μM in winter to about 280 μM in summer. All this excess DOC disappears during winter, probably degraded by bacterial activity. The degradation of carbon-rich organic matter increases the phosphorus demand by bacteria bringing limitation to phytoplankton primary production.     

Speed bumps and barricades in the carbon cycle: substrate structural effects on carbon cycling

The observation that a fraction of organic matter produced in marine systems evades the concerted efforts of microbial communities and is buried in sediments suggests that there are ‘speed bumps’ in carbon degradation pathways that impede microbially driven remineralization processes. The initial step in degradation of macromolecules, extracellular enzymatic hydrolysis, is often stated to be ‘the’ rate-limiting step in carbon remineralization. Experimental investigations described here, however, demonstrate that at least in certain cases, microbes produce extracellular enzymes on time scales of hours to tens of hours in response to substrate addition, and hydrolysis is extremely rapid. If enzymatic hydrolysis can be rapid, what factors slow or stop organic matter degradation? A lack of the correct inducer to initiate enzyme production, and/or a lack of the correct organism to produce the required enzyme, may result in a complete lack of hydrolysis in certain environments—a barricade, rather than a speed bump. Preliminary evidence supporting this hypothesis includes a comparison of polysaccharide hydrolysis in seawater and sediments, which demonstrates that the spectrum of enzymes active in seawater and sediments are fundamentally different. Furthermore, a survey of enzyme activities in surface waters from a range of locations suggests that pelagic microbial communities also differ widely in their abilities to express specific extracellular enzymes. Trans-membrane transport through porins is yet another potential location of structure-related selectivity.Our efforts to identify speed bumps and barricades are hampered by our inability to structurally characterize in sufficient detail the macromolecular structures present in marine systems. Furthermore, assessments of organic matter ‘quality’ from a chemical perspective do not necessarily accurately reflect the availability of organic carbon to microbial communities. For these communities, in fact, ‘quality’ may be a variable, which depends on the enzymatic and uptake capabilities of community members. To begin to assess substrate structure and quality from a microbial perspective, we will have to combine specific knowledge of macromolecular structures with detailed investigations of the enzymatic and transport capabilities of heterotrophic marine microbes.     

Microbial Biomass and Organic Nutrients in the Deep-Sea Sediments of the Central Indian Ocean Basin

In order to assess the impact of deep-sea mining on the in situ benthic life, we measured the microbial standing stock and concentration of organic nutrients in the deep-sea sediments of the Central Indian Ocean Basin in the Indian pioneer area. Sediments were collected using box core and grab samples during September 1996. The total bacterial numbers ranged from 10 10 -10 11 cells per g -1 dry weight sediment. There was a marginal decrease in the number of bacteria from surface to 30 cm depth, though the subsurface section registered a higher number than did the surface. The highest numbers were encountered at depths of 4-8 cm. The retrievable number of bacteria were two orders less in comparison with the direct total counts of bacteria. An almost homogeneous distribution of bacteria, total organic carbon, living biomass, and lipids throughout the depth of cores indicates active microbial and benthic processes in the deep sea sediments. On the other hand, a uniform distribution of total counts of bacteria, carbohydrates, and total organic carbon in all the cores indicates their stable nature and suggests that they can serve as useful parameters for long-term monitoring of the area after the benthic disturbance. Further studies on temporal variability in this region would not only verify the observed norms of distribution of these variables but would also help to understand restabilization processes after the simulated benthic disturbance.     

Dissolved Carbohydrate Concentration,Composition, and Bioavailability to Microbial Heterotrophs in Stream Water

Dissolved total carbohydrates (DTCH), dissolved free monosaccharides (DFMS), dissolved organic carbon (DOC), biodegradable DOC (BDOC), and humic substances (HS) were measured in White Clay Creek (WCC), a stream in southeastern Pennsylvania Piedmont, USA. Samples were collected over different seasons and under baseflow and stormflow conditions. DOC concentrations ranged from 1.0 to 12.8 mg/L C with the highest concentrations associated with stormflows. Carbohydrates ranged from 0.42 to 12.4 μM and accounted for 2.9 to 12.7% of the DOC. Humic substances represented the major DOC fraction, accounting for 55 to 72% of the DOC pool under all flow conditions. The humic fraction had a lower carbohydrate content (4.4%) than the non-humic fraction of DOC (7.2%). Stormflow DOC was enriched in carbohydrates relative to baseflow DOC, but the percentage of humic-C changed little. Carbohydrates were primarily present as dissolved polysaccharides (55%), but a significant fraction was bound to humic substances (40%), while a small proportion was present as monosaccharides (5%). The major monosaccharides in stream water, listed in order of decreasing concentration, included glucose, galactose, rhamnose, xylose, arabinose, mannose, and fucose. On average (30.6 ± 7.4)% (n = 44) of the stream water DOC was biodegradable, and carbohydrates accounted for 9.9 to 17.7% of the BDOC.     

Biochemical Characterization of Refractory Organic Substances

The characterization of refractory organic substances (ROS) is very complicated because of their heterogeneous structure. Size-exclusion chromatography with continuous detection of dissolved nitrogen (LC-DN), dissolved organic carbon (LC-DOC), and UV-absorbance (LC-UV) is a very useful analytical tool for the characterization of changes of ROS in natural aquatic systems and in technological treatment. The effect of natural, oxidative, and biochemical processes on formation and removal of ROS is described. Additionally the role of hydrolysable carbohydrates in the composition of ROS is presented.     

Organic compound tracers of fine soil and sand particles during summer in the metropolitan area of Riyadh,Saudi Arabia

Soil and sand fine particles, which may be resuspended as fine dust in the atmosphere, contain a variety of anthropogenic and natural organic components. Samples of fine soil and sand particles (sieved to <125 μM) were collected from the Riyadh area in the summer of 2003 and extracted with a mixture of dichloromethane and methanol (3:1, v:v). The derivatized total extracts were analyzed by gas chromatography–mass spectrometry in order to characterize the composition and sources of the organic components. Both anthropogenic and natural biogenic inputs were the major sources of the organic compounds in these extracts. Discarded plastics and vehicular emission products were the major anthropogenic sources in the fine particles from populated areas of the city. Their tracers were plasticizers, UCM, n-alkanes, hopanes and traces of steranes. Vegetation was the major natural source of organic compounds in samples from outside Riyadh and included n-alkanols, n-alkanoic acids, n-alkanes, methyl alkanoates, sterols and triterpenoids. Carbohydrates had high concentrations (42–54%) in all samples and indicate sources from decomposition of cellulose and/or the presence of viable microbiota such as bacteria and fungi. The results were also compared with the data obtained in winter 2002 and showed that anthropogenic inputs were higher in summer than in winter, whereas the opposite trend was observed for natural inputs.     

南海水柱微体生物壳体中氨基酸、氨基糖与糖类物质的检出及意义

对１９９４－１９９５年南海中部时间系列沉积物捕获器收集的微体生物壳体进行了氨基酸与糖类分析,结果表明,微体生物壳体中含有的氨基酸与糖类物质大致与颗粒物全样相当,其氨基酸与糖类组成基本保持了活体浮游生物的特征,而与颗粒物全样的有所不同,推测氨基酸与糖类物质一是作为壳体本身的组成部分存在于壳体中,二是被包裹在有孔虫房室及放射虫、硅藻壳体纹饰或筛孔中,因而可以很好保存,上述结果表明生物南体本身也是有机质从海洋表层向下输送的良好载体,而且生物体内氨基酸与糖类组成的原生信息可以很好地保存于壳体内,这对于利用壳体中的生物标志物来追索原生的有机物来源,演化及其它环境矍有重要意义。     

Distributions of carbohydrate species in the Gulf of Mexico

In order to study the role of polysaccharides in the cycling of marine organic matter and transparent exopolymeric particles (TEP), the concentrations of total carbohydrates (p-TCHO), total uronic acids (URA) and total acid polysaccharides (APS) in suspended and sinking particles, as well as carbohydrates in the filter-passing “dissolved” phase (d-TCHO), were measured in vertical profiles along a N–S transect in the Gulf of Mexico, across a cold core (CCR) and a warm core (WCR) ring (eddy) during both July 2000 and May 2001. The concentrations of d-TCHO in 2000 ranged from 4 to 22 μM C, with a subsurface maximum, which was located slightly above the depth of chl a maximum, amounting to, on average, 34% of DOC in the CCR, and 13% in the WCR. The concentration of particulate carbohydrates (p-TCHO) in different size fractions (0.7–10, 10–53, and >53 μm) ranged from 0.04 to 1.1, 0.005 to 0.40, and 0.006 to 0.26 μM C, respectively, indicating that carbohydrates are mostly concentrated in small particles (0.7–10 μm). URA and APS were similarly concentrated in small particles, in which, on average, URA accounted for 87% and 57% of total URA, and APS for 92% and 88% of total APS in 2000 and 2001, respectively. URA accounted for 3–9% of carbohydrates in suspended particles, suggesting that URA are a minor component of the p-TCHO pool. Due to its surface-reactive nature, URA could play a major role in the coagulation of particles and macromolecules despite its relatively low abundance. While, on average, p-TCHO and total APS were more enriched in suspended particles than in sinking particles in both 2000 and 2001, the opposite was true for URA in both years. The greater contents of URA that are present in settling particles compared to suspended particles could indicate a mass flow in the direction of sinking particles, either caused by coagulation, by bacterial reworking of particulate and colloidal organic matter, or by their more refractory nature.     

两种培养温度下钝顶螺旋藻吸收累积锗的研究

于１９９５年１￣３月将钝顶螺旋藻培养在５￣１５ｍｇ／Ｌ锗浓度的培养基内,研究两种培养温度下藻细胞,蛋白质、脂类和碳水化合物结合锗的量,探讨温度影响螺旋菏吸收累积锗的机理,结果表明,在两种培养温度下钝顶螺旋藻均可吸收累积一定量的猪（２２．４４－５２．１３μｇ／ｇ）并均匀地结合到蛋白质、脂类和碳水化合物中,藻细胞结合锗的理在代温下随外加是浓度增加而增加,在高温下与外加是浓度关系不明显;两种培养温度２下     

Ultrasound assisted extraction and determination of the carbohydrate fraction in marine sediments

In this paper, an ultrasound–acetic acid procedure for the simultaneous extraction and hydrolysis of carbohydrates in marine sediments prior to their colorimetric determination is described. The main advantage of the proposed procedure is the improved analytical accuracy achieved. Extraction and hydrolysis are quantitative since the oxidative reactions which cause the underestimation of the total carbohydrate amount are minimized. Moreover the procedure is fast, requiring only 5 h for the whole analysis (extraction, hydrolysis and colorimetric determination by the phenol-sulphuric acid method). The proposed procedure has recoveries generally higher than 80% and gives comparable results with the conventional 24 h HCl extraction.