Instrument development to search for biomarkers on mars: Terrestrial acidophile, iron-powered chemolithoautotrophic communities as model systems

Recent findings by the MER rover opportunity confirming the presence of iron minerals that can only be formed in the presence of water emphasize the study of analogous environments to Mars on Earth. The study of chemolithoautotrophic communities living in acidic iron-rich habitats is highly relevant in order to identify Mars analog environment-specific biomarkers. Iron oxidizing bacteria like Leptospirillum ferrooxidans and Acidithiobacillus ferrooxidans have ways of life for which it is feasible to identify a past or present hypothetical niche on Mars. We have developed a strategy for biomarker identification based on: (i) search for biosignatures on acid and metal-rich environments; (ii) development of an immunosensor microarray; and (iii) integration into an instrument for autonomous and remote operation. The instrument that we have built, called Signs Of LIfe Detector (SOLID), is capable of processing a variety of samples for the detection of specific biomarkers. Antibodies against several bacterial strains have been developed and tested in a microarray biosensor on SOLID. Tests with field samples have been successfully performed, allowing the detection of L. ferrooxidans, A. ferrooxidans present in sediment samples.     

Experimental study on the deterioration and natural remediation of the Ariake Sea tidal mud caused by the sea laver treatment acid practice and the upward seepage of pore water liquid

This study presents a laboratory study of the following two aspects: (1) the influence of sea laver treatment acid on the geoenvironmental properties of Ariake Sea tidal mud, and (2) the natural remediation effect on the sea laver treatment acid contaminated Ariake Sea tidal mud caused by the upward seepage of pore water liquid in the mud. Firstly, the mechanisms of the transport of sea laver treatment acid in the Ariake Sea tidal mud and the generation mechanisms of the upward seepage flow in the Ariake Sea tidal mud are discussed. Secondly, a series of one-dimensional laboratory infiltration tests were carried out to investigate the deterioration of the Ariake Sea tidal mud caused by the sea laver acid treatment practice. Test results reveal that the acid treatment practice caused considerable change in the geochemical properties of the mud in terms of increase in sulfide content and decrease in pH value. After the treatment by the sea laver treatment acid, the sulfide content of the mud even exceeded the safe limit value for the benthos, which represents undesirable living condition for benthos. Thirdly, series of laboratory fresh seawater infiltration tests for the deteriorated Iida site mud were conducted to illustrate this natural remediation efficiency. It is found that with the infiltration of the fresh seawater, the sulfide content of the Iida site mud was considerably reduced and pH value increased to an acceptable range for benthos living in the tidal flat mud. With the increase in the infiltration time and the hydraulic gradient, the remediation efficiency could be increased.     

Temporal variability of Pb fluxes and bioturbation in shelf sediments beneath the high primary production area off Concepción, central-southern Chile (36°S)

We estimated monthly fluxes of ²¹⁰Pb in shelf sediments beneath a high productivity area off central-southern Chile (36°S) during 1 year (September 2002-August 2003). Sediment cores were obtained using a multiple corer and were analyzed mainly for ²¹⁰Pb, total pigments, and macrofauna abundance. The ²¹⁰Pb inventories and fluxes were estimated for surface sediments (0-5 cm) and bioturbation coefficients were inferred using chlorophyll-a (reactive) profiles. In general, ²¹⁰Pb content was inversely correlated with phytodetritus fluxes. High photosynthetic pigment contents in surface sediments were consistently associated with lower ²¹⁰Pb contents. Macrofaunal activity responded to oxygen and organic matter supplies at the sediment surface, generally concentrated in the first centimeters, but particularly so during months of high organic matter fluxes and deficient bottom water oxygen conditions. At this study site, several processes involved in the ²¹⁰Pb surface distribution make it difficult to accurately estimate ages at the surface. We postulate that the organic fluxes promote changes in the faunal activity, which, in combination with sediment resuspension and water circulation over the shelf, produce seasonal variations in the ²¹⁰Pb inventories.     

中国对虾育苗池和养成池微型污着生物群落的研究

于１９９２年４－１０月在山东省青岛市黄岛前湾育苗场和胶南市红石崖镇邵家村养殖场，采用载玻片挂片和对中国对虾现场取样的方法，研究中国对虾育苗池和养成池载玻片挂 表面和对体表微型污着生物群落的组成和发展。     

A case study of mollusc and polychaete soft-bottom assemblages submitted to sedimentary instability in the Mediterranean Sea

In the Strait of Messina (Sicily, Central Mediterranean Sea) strong tidal currents, very irregular hydrological regime and related solid load, and local seismic activity cause sediment instability; this area represents therefore a case‐study of a naturally disturbed soft‐bottom environment. In this paper, mollusc and polychaete assemblages of the northern part of the Strait were described. Composition, community structure, eco‐ethological features, trophic guilds and sediment‐type relationships were studied in 64 stations sampled located between 3.5 and 50 m depth in October 1992 by means of a Van Veen grab. A total of 131 species (65 molluscs and 66 polychaetes) were identified. A dense population of the tubicolous polychaete Ditrupa arietina was recognized, together with the occurrence of other species tied to a high sedimentation rate, such as Corbula gibba and Tellina distorta, as well as widespread, mud‐tolerant species (e.g.Chone spp., Hyalinoecia tubicola). Diversity (H′) showed a peak at intermediate depths (10/20 m) and a clear decrease beyond this depth, corresponding to the Ditrupa core population. Multivariate comparison between sediment features and community composition throughout the bathymetric gradient showed a narrow ecocline between two environments subjected to opposite hydrodynamic constraints. In the shallower zone, a wide typology of trophic‐ethological guilds was related to community patchiness, in contrast to a greater functional uniformity of the deeper assemblage, dominated by sessile, semi‐infaunal suspension feeders. A possible role played by a phase of increased rainfall to increase bottom instability, locally emphasized by a previous human activity, is also discussed.     

Shallow-Water Gasohydrothermal Vents of Ushishir Volcano and the Ecosystem of Kraternaya Bight (The Kurile Islands)

Abstract. A marine ecosystem in the crater of the Ushishir Volcano (Kraternaya Bight, Yankich Island, the Kuriles) showing gasothcrmal activity was studied for hydrographical, hydrochemical, and biological characteristics. Maximal changes in chemical and biological characteristics were observed in the surface water layer of 0–5 m. This layer had higher water temperature, was saturated with volcanogcnic carbon dioxide (up to 2000 10^-6 torr), ovcrsaturatcd with oxygen (up to 200 %), and contained high concentrations of chlorophyll a. Hydrogen sulfide was found in the surface water layer and at a depth of 15 m in the area of maximal effect of volcanic effluents.
The planktonic community is characterized by high rates of production and destruction of organic matter only in the 0–5 m layer. Daily vertical migrations of the ciliatc Mesodinium rubrum were observed, which caused "red tides".
Bacterial, algobacterial, and diatom mats developed on the bottom of the bight in the zone of gasohydrothermal vents and in areas of volcanic water seeping. The rate of organic matter production in algobacterial mats reached 33.4g C-rrr²-d^-l, chcmolithotrophy predominating. Bottom settlements had high population density and great animal biomass, which reached 10 kg m^-2 in gasohydrothermal fields. They obtain sufficient energy from primary production of microphy-tobenthos, algobacterial, and bacterial mats. Bcnthic species dominant in the bight were not found off the Ushishir Islands.
Some species of macrobenthos inhabiting the Kraternaya Bight differ markedly in size and biomass from the same species found beyond the bight.     

The regime shift of the 1920s and 1930s in the North Atlantic

During the 1920s and 1930s, there was a dramatic warming of the northern North Atlantic Ocean. Warmer-than-normal sea temperatures, reduced sea ice conditions and enhanced Atlantic inflow in northern regions continued through to the 1950s and 1960s, with the timing of the decline to colder temperatures varying with location. Ecosystem changes associated with the warm period included a general northward movement of fish. Boreal species of fish such as cod, haddock and herring expanded farther north while colder-water species such as capelin and polar cod retreated northward. The maximum recorded movement involved cod, which spread approximately 1200 km northward along West Greenland. Migration patterns of “warmer water” species also changed with earlier arrivals and later departures. New spawning sites were observed farther north for several species or stocks while for others the relative contribution from northern spawning sites increased. Some southern species of fish that were unknown in northern areas prior to the warming event became occasional, and in some cases, frequent visitors. Higher recruitment and growth led to increased biomass of important commercial species such as cod and herring in many regions of the northern North Atlantic. Benthos associated with Atlantic waters spread northward off Western Svalbard and eastward into the eastern Barents Sea. Based on increased phytoplankton and zooplankton production in several areas, it is argued that bottom-up processes were the primary cause of these changes. The warming in the 1920s and 1930s is considered to constitute the most significant regime shift experienced in the North Atlantic in the 20th century.     

Biodiversity of meiofauna in the intertidal khe nhan mudflat,can gio mangrove forest,vietnam with special emphasis on free living nematodes

The ecological aspect of meiofaunal communities in Can Gio mangrove forest, Ho Chi Minh city, Vietnam has not been investigated before. The composition, distribution, density and biodiversity of meiofaunal communities were studied along an intertidal transect at the Khe Nhan mudflat. Each time, three replicate samples were collected in four stations along a transect following the water line from low tide level up to the mangrove forest edge. In total, 18 meiofaunal taxa were found with the dominant taxa belonging to Nematoda, Copepoda, Sarcomastigophora and Polychaeta. The densities of meiofauna ranged from 1156 inds/10 cm² to 2082 inds/10 cm². The increase in densities from the mangrove forest edge towards the low water line was significant. Along the mudflat transect, the biodiversity (expressed by different indices) was relatively high at different taxonomic levels but did not vary significantly along the mudflat except for taxa richness. Eighty nematode genera belonging to 24 families with Comesomatidae having the highest abundance 33.8 % were found.Theristus andNeochromadora decreased in densities from the lower water line towards the mangrove forest edge, whileParacomesoma andHopperia are typical and more abundant at the middle of the mudflat.Halalaimus increased from high on the mudflat to the low water line.