Determination of phospholipid fatty acid structures and stable carbon isotope compositions of deep-sea sediments of the Northwest Pacific, ODP site 1179

Sediment samples ranging from 0.05 to 278 m below sea floor (mbsf) at a Northwest Pacific deep-water (5564 mbsl) site (ODP Leg 191, Site 1179) were analyzed for phospholipid fatty acids (PLFAs). Total PLFA concentrations decreased by a factor of three over the first meter of sediment and then decreased at a slower rate to approximately 30 mbsf. The sharp decrease over the first meter corresponds to the depth of nitrate and Mn(IV) reduction as indicated by pore water chemistry. PLFA-based cell numbers at site 1179 had a similar depth profile as that for Acridine orange direct cell counts previously made on ODP site 1149 sediments which have a similar water depth and lithology. The mole percentage of straight chain saturated PLFAs increases with depth, with a large shift between the 0.95 and 3.95 mbsf samples. PLFA stable carbon isotope ratios were determined for sediments from 0.05 to 4.53 mbsf and showed a general trend toward more depleted δ¹³C values with depth. Both of these observations may indicate a shift in the bacterial community with depth across the different redox zones inferred from pore water chemistry data. The PLFA 10me16:0, which has been attributed to the bacterial genera Desulfobacter in many marine sediments, showed the greatest isotopic depletion, decreasing from − 20 to − 35‰ over the first meter of sediment. Pore water chemistry suggested that sulfate reduction was absent or minimal over this same sediment interval. However, 10me16:0 has been shown to be produced by recently discovered anaerobic ammonium oxidizing (anammox) bacteria which are known chemoautotrophs. The increasing depletion in δ¹³C of 10me16:0 with the unusually lower concentration of ammonium and linear decrease of nitrate concentration is consistent with a scenario of anammox bacteria mediating the oxidation of ammonium via nitrite, an intermediate of nitrate reduction.     

Seasonal DOC accumulation in the Black Sea: a regional explanation for a general mechanism

During three cruises in the Black Sea, organised in July 1995 and April–May 1997, biological and chemical parameters that can influence the carbon budget were measured in the water column on the NW shelf, particularly in the mixing zone with Danube River waters. We observed in early spring (end of April–May) conditions an important input of freshwater organisms that enhanced the microbial activity in the low salinity range. High bacterial activity regenerates nitrogen in the form of nitrates, but is also responsible for an important consumption of ammonium and phosphate, leading to a high N/P ratio and a strong deficit in phosphorus. The consequence is a limitation of phytoplankton development but also a production of carbohydrates that accumulate all along the salinity gradient. These mechanisms are responsible for a seasonal accumulation of dissolved organic carbon (DOC) that increases from 210 μM in winter to about 280 μM in summer. All this excess DOC disappears during winter, probably degraded by bacterial activity. The degradation of carbon-rich organic matter increases the phosphorus demand by bacteria bringing limitation to phytoplankton primary production.     

Micro-spectroscopic investigations of highly heterogeneous waste repository materials

Assuring safe disposal and long-term storage of radioactive and toxic wastes corresponds to a primary environmental task of present societies. To improve any technical limitation, a mechanistic understanding of the processes governing the binding of heavy metals and radionuclides is required. In this study, the significance of synchrotron-based X-ray microprobes for elucidating the spatial distribution and the speciation of radionuclides in highly heterogeneous waste repository materials will be outlined. A case study on the uptake process of Co in cementitious engineered barrier materials exposed to microbial degradation will be presented.     

Dynamics and interaction of organic carbon, turbidity and bacteria in a karst aquifer system

The dynamics of organic carbon (OC), turbidity, faecal indicator bacteria and physicochemical parameters was studied in a karst system near Yverdon, Switzerland. Online measurements and sampling were done at a swallow hole draining an agricultural surface (the input), and two groups of springs (the outputs) that often show bacterial contamination. A fluorescent tracer that was injected into the swallow hole during low-flow conditions first arrived at the springs 10–12 days after injection; the total recovery rate was 29%. Previous tracer tests during high-flow conditions gave shorter travel times. After a major rainfall event, a primary turbidity peak was observed at the springs. It coincides with the rising limb of the hydrograph, indicating remobilisation of autochthonous particles from the aquifer. A secondary turbidity peak occurs several days later, suggesting the arrival of allochthonous particles from the swallow hole. Wider peaks of OC and bacteria were observed simultaneously. Applying methods from molecular microbiology (PCR-DGGE) allowed characterisation of the bacterial communities at the swallow hole and the springs. The results demonstrate that the swallow hole is an important source of groundwater contamination, while its contribution to aquifer recharge is insignificant. OC appears to be a better indicator for bacterial contamination than turbidity.     

Experimental abiotic alteration of igneous and manufactured glasses

Pits in ocean basalt glass are often attributed to the activity of microorganisms, however, neither the mechanism of formation of pits in glass nor the involvement of microorganisms have been confirmed by experimentation. Experimental abiotic corrosion of basalt glass with 1% hydrofluoric acid (HF), a proxy for more slowly acting organic acids, produces pits that are similar in size, shape, and distribution to pits found in basalt glass collected from the ocean floor and basalt glass incubated with microorganisms. This pit formation by HF etching was demonstrated by comparing secondary electron images taken before and after the acid treatment. The formation of pits by abiotic corrosion of basalt glass is an alternate hypothesis for the origin of these features, and the interpretation of these features as biomarkers may require a resolution of these alternative hypotheses.     

硅质碎屑岩中的微生物席相关构造——联接现代与过去的纽带

微生物通过自身生命活动可以在硅质碎屑物上形成微生物席.微生物席具有黏结性、柔韧性、抗剥蚀性等特征,与物理营力相互作用可以形成一系列独特的原生沉积构造,即微生物诱发的沉积构造(MISS).形成和保存MISS的基本条件包括经历较低的变质程度、发育于海退—海侵的转折点、出现在有利的“微生物席沉积相”中.微生物席本身很难保存在岩石序列中,所以识别石化MISS具有一定难度.与现代环境中发育的MISS具有相似的几何形态和包含古代微生物席组构是识别石化MISS的有效途径.微生物生长、稳化、障积、捕获和黏结作用可以形成形态各异的MISS,根据这些作用和特征可以将其划分为5大类17小类.对保存在硅质碎屑岩中的微生物诱发的原生沉积构造和现代潮坪中发育的MISS进行综合对比研究,有利于微生物席沉积学的发展,也为进一步理解古代硅质碎屑岩沉积环境提供重要线索.     

盘锦芦苇湿地土壤微生物特征分析

基于盘锦湿地生态系统野外观测站芦苇群落生长季6～9月的定位观测资料,分析了芦苇湿地土壤微生物季节动态及其与环境因子的关系。结果表明:盘锦芦苇湿地的土壤细菌、放线菌、真菌以及微生物的总数在生长季节呈现出先减少、后增加的变化趋势。湿地的土壤细菌、放线菌以及微生物的总数在8月达到最小,而真菌数量在7月达到最小。湿地土壤中,细菌数量最大,其次是放线菌,最少的是真菌。对细菌、放线菌、真菌以及微生物总数与环境因子的相关分析表明,细菌、放线菌与微生物总数主要受水分影响,而真菌则受水分与气温的协同作用影响     

The diagenetic history of Oligocene-Miocene sandstones of the Austrian north Alpine foreland basin

Diagenesis is an essential tool to reconstruct the development of reservoir rocks. Diagenetic processes - precipitation and dissolution - have an influence on pore space. The present paper aims to study the diagenetic history of deep-marine sandstones of the Austrian Alpine Foreland Basin. To reach that goal, sediment petrology and diagenetic features of more than 110 sandstone samples from water- and gas-bearing sections from gas fields within the Oligocene-Miocene Puchkirchen Group and Hall Formation has been investigated. Special emphasis was put on samples in the vicinity of the gas-water contact (GWC). The sediment petrography of sandstones of Puchkirchen Group and Hall Formation is similar; hence their diagenesis proceeded the same way. In fact, primary mineralogy was controlled by paleo-geography with increasing transport distance and diverse detrital input.Sediment petrographically, investigated sandstones from the water-bearing horizon seemed quite comparable to the gas-bearing sediments. In general, they can be classified as feldspatic litharenites to litharenites and display porosities of up to 30% and permeabilities of up to 1300 mD. The carbon and oxygen isotopic composition of bulk carbonate cements from these sandstones range from−3.8 to +2.2 and from −7.5 to +0.2‰ [VPDB]. However, near the Gas-Water Contact (GWC) a horizon with low porosities (<3%) and permeabilities (<0.1 mD) is present. This zone is completely cemented with calcite, which has a blocky/homogenous morphology. A slight, but significant negative shift in δ18O isotopy (−2.5‰) is evident.During early diagenesis the first carbonate generations formed. First a fibrous calcite and afterwards a micritic calcite precipitated. Further siliciclastic minerals, such as quartz and feldspar (K-feldspar and minor plagioclase), exhibit corroded grains. Occasionally, clay minerals (illite; smectite, chlorite) formed as rims around detrital grains. Late diagenesis is indicated by the formation of a low permeable zone at the GWC.     

海洋浮游微食物网结构及其影响因素

微食物环是海洋生态系统中重要的物质和能量过程,是传统食物链的有效补充。微食物环研究是当前海洋生态学研究的热点之一,但对其结构的系统研究较少,海洋微食物网结构在2000年才被Garrison提出。尽管微食物网各个类群的丰度在不同海洋环境中有相对变化,但是这些变化都处于一定的范围之内,其丰度结构约为纤毛虫10 cell ml-1、鞭毛虫103 cell ml-1、微微型真核浮游生物104 cell ml-1、蓝细菌104-5 cell ml-1、异养细菌106 cell ml-1、病毒107 particle ml-1。海洋浮游食物链中捕食者和饵料生物粒径的最佳比值为10:1,实际研究中该比值会略低,例如纤毛虫与其饵料的粒径比值为8:1,鞭毛虫为3:1。Pico和Nano浮游植物的丰度比（Pico:Nano）是研究微食物网结构的指数之一,该指数具有不受研究尺度影响的优点,可用于研究区域性和全球性微食物网结构。近年来,学者们从多角度对海洋微食物网的结构开展了研究,不同海区微食物网各类群丰度、生物量的时间和空间变化研究有很多报道,微食物网的结构可受空间、季节、摄食、营养盐等多种因素影响。在对不同空间微食物网的研究中,学者往往研究不同物理性质的水团中各类群生物丰度的不同,以此来表征微食物网结构的不同;同一海区微食物网结构的季节变化也是使用各个类群丰度和生物量的变化来表示,该变化主要受水文环境因素影响。摄食者对微食物网各类生物的影响通过三种途径：1. 中型浮游动物摄食;2. 中型浮游动物摄食微型浮游动物,通过营养级级联效应影响低营养级生物;3. 中型浮游动物通过释放溶解有机物、营养盐影响细菌和低营养级生物。浮游植物通过产生化感物质和溶解有机物影响微食物网结构,而营养盐的浓度及变化则可以对微食物网产生直接或间接影响。