大黄鱼(Pseudosciaena crocea)转铁蛋白(Tf)基因克隆及序列分析

提要应用RNeasy animal mini试剂盒抽提大黄鱼total RNA,逆转录合成模板cDNA;同时综合分析从GenBank数据库查询到已报道的转铁蛋白(Tf)基因序列,先设计并合成扩增引物扩增出大黄鱼转铁蛋白部分基因序列,再应用RACE技术,克隆出大黄鱼转铁蛋白全长cDNA基因,全长2461个核苷酸,编码661个氨基酸。应用WCG软件包,采用DNADIST和NEIGHBOR分析方法,构建了转铁蛋白系统进化树。树图显示与传统的分类地位大致相符,可以看出转铁蛋白在海水鱼和淡水鱼的进化上的差异,同时也显示大黄鱼Tf与真鲷的同源性最高。     

钝顶螺旋藻部分原生质体及单细胞的制备与培养

于1992年1月-1994年4月，进行超声波处理方法制备钝顶螺旋藻部分原生质体以作为基因工程受体，以及制备单细胞用于固体平板克隆化培养的研究。研究结果表明：超声波以20kHz频率、15W功率作用30s，可使藻丝体断裂成15．0±1．6个细胞长度；延长作用时间，至2－6个细胞长度时，细胞壁结构遭到破坏，形成部分原生质体；继续作用，可形成少量原生质体和大量单细胞。断裂藻丝体、部分原生质体、单细胞以及原生质体均可涂布于固体培养基上再生或生长。以一定密度涂布单细胞与原生质体，能够形成彼此分开的单个克隆，可用于筛选及遗传分析。本文提供了一种节省溶菌酶的制备螺旋藻透性体的方法，超声波作用利于外源基因的导入，而涂布培养利于进一步的筛选和形成克隆。     

一种基于人工免疫的图像分割算法

图像二维熵分割,一直因耗时长而限制了实际应用。本文借鉴生物免疫思想,提出二维熵图像分割的人工免疫算法。在克隆选择算法中引入疫苗的免疫接种,用于优化最优分割阈值对的搜索过程。在遥感高分辨率图像上的实验显示,该算法不仅能准确搜索到最优阈值对,而且计算时间只有传统算法的1.8%。该算法也验证了人工免疫思想用于图像分割的可行性和有效性。     

CLONGING AND THE EXPRESSION ANALYSIS OF CYP19A GENE cDNA DURING THE REPRODUCTIVE CYCLE OF SEBASTES SCHLEGELI

从许氏平鲐脑组织中克隆到细胞色素P450芳香化酶（P450aromB）（CYP19B）基因核心功能区cDNA。结果表明,许氏平铀CYP19B主要功能区片段编码369个氨基酸,包括I-螺旋区、Ozol’s肽区及部分芳香化酶特异性保守区。RT-PCR分析表明,CYP19B在雌鱼和雄鱼各组织中表达情况不同,在雌鱼中表达较丰富,但是两者都在性腺和脑中有表达,且脑中的表达量高于性腺。生殖季节表达结果表明,CYP19B在繁殖前期表达较为丰富,退化期未见有表达。CYP19B在精巢处于Ⅲ期的许氏平鲐脑组织中表达最为丰富,在精巢发育Ⅳ期的脑组织表达量最低。上述研究结果说明,CYP19B在雌性和雄性许氏平鲐繁殖周期中均发挥重要生理作用。     

Biochemical and microbial features of shallow marine sediments along the Terra Nova Bay (Ross Sea,Antarctica)

Shallow marine sediments were collected from seven stations (three of which located at Gerlache Inlet, two at Tethys Bay, one at Adelie Cove and one just beneath the Italian Research Base) along the Terra Nova Bay coast (Ross Sea, Antarctica). Their chemical, biochemical and microbiological properties were studied in order to provide further insights in the knowledge of this Antarctic benthic ecosystem. Overall, the organic carbon (OC) represented the major fraction of total carbon (TC) and displayed concentrations similar to or slightly lower than those previously measured in Antarctic bottom sediments. The biopolymeric carbon within OC ranged from 4.1% to 19.9% and showed a wide trophic range (65–834 μg g⁻¹ d.w.). Proteins (PRT) represented on average the main biochemical class contributing to labile organic carbon, followed by lipids (LIP) and carbohydrates (CHO). The activity of aminopeptidase, β-d-glucosidase, alkaline phosphatase and esterase was checked, giving the highest values at Tethys Bay and at the deepest water sediments. The principal component analysis, which was computed considering physical, chemical (elemental and biochemical sedimentary composition) and microbiological parameters (including bacterial abundance, ectoenzymatic activities, T-RFs richness and diversity indices), allowed to obtain two main clusters (“Tethys Bay” and “other stations”). Based on data obtained, two representative 16S rRNA clone libraries using samples from Tethys Bay and Gerlache Inlet were constructed. The sequences of 171 clones were compared to those available in public databases to determine their approximate phylogenetic affiliations. Both aerobic and anaerobic bacteria were disclosed, with the majority of them affiliated with the Gamma- and Deltaproteobacteria, Bacteroidetes and Acidobacteria. The occurrence of strictly anaerobic bacteria suggests that sediments might also undergo anoxic conditions that, in turn, could favor the accumulation of PRT in respect to CHO, assuming that fermentation of amino acids is slower than that of sugars from decomposing polysaccharides.     

虚拟技术在地震前兆技术系统中的应用

地震前兆技术系统长期稳定和可靠运行对管理人员来说至关重要,本文以山西前兆台网为例,基于VMware虚拟机搭建了地震前兆技术系统,并利用其快闪及克隆功能实现了地震前兆技术系统的快速备份及恢复,提升了地震前兆技术系统故障应急处置能力。     

Structure of microbial communities and hydrocarbon-dependent sulfate reduction in the anoxic layer of a polluted microbial mat

The bacterial communities in the anoxic layer of a heavily polluted microbial mat and their growth on hydrocarbons under sulfate-reducing conditions were investigated. Microbial communities were dominated by members of Alphaproteobacteria (27% of the total rRNA), Planctomycetes (21.1%) and sulfate-reducing bacteria (SRB: 17.5%). 16S rRNA cloning revealed sequences beloning to the same bacterial groups with SRB affiliated to the genera Desulfobulbus, Desulfocapsa, Desulfomicrobium, Desulfobacterium and Desulfosarcina/Desulfococcus. The derived enrichment cultures on crude oil, hexadecane and toluene were dominated by SRB. While most SRB sequences of the toluene and hexadecane cultures were related to the sequence of Desulfotignum toluolica, the crude oil enrichment showed a more diverse bacterial community with sequences from the genera Desulfotignum, Desulfobacter, Desulfatibacillus, Desulfosalina, and Desulfococcus. We conclude that the anoxic layer of the studied mats contains a diverse community of anaerobic bacteria, dominated by SRB, some of which are able to grow on hydrocarbons.     

罗非鱼源无乳链球菌（Streptococcusagalactiae）Sip基因的克隆、鉴定及分子特性分析

利用设计的特异性引物,扩增出了分离自患病罗非鱼无乳链球菌强毒株Sip基因,并将其克隆到pMD19-T载体上,之后对重组质粒进行了PCR和双酶切（BamHⅠ＋HindⅢ）鉴定,并利用多种生物信息学软件对Sip基因进行分子特性分析。结果显示,罗非鱼源无乳链球菌Sip编码氨基酸序列具有极高保守性,与人源、哺乳动物源无乳链球菌...     

许氏平鮋( Sebastes schlegeli) CYP19B 基因cDNA克隆及在生殖周期中的表达分析

从许氏平鲉脑组织中克隆到细胞色素P450芳香化酶(P450aromB)(CYP19B)基因核心功能区cDNA。结果表明,许氏平鲉CYP19B主要功能区片段编码369个氨基酸,包括I-螺旋区、Ozol’s肽区及部分芳香化酶特异性保守区。RT-PCR分析表明,CYP19B在雌鱼和雄鱼各组织中表达情况不同,在雌鱼中表达较丰富,但是两者都在性腺和脑中有表达,且脑中的表达量高于性腺。生殖季节表达结果表明,CYP19B在繁殖前期表达较为丰富,退化期未见有表达。CYP19B在精巢处于Ⅲ期的许氏平鲉脑组织中表达最为丰富,在精巢发育Ⅳ期的脑组织表达量最低。上述研究结果说明,CYP19B在雌性和雄性许氏平鲉繁殖周期中均发挥重要生理作用。