Assessing degradation capability of aerobic indigenous microflora in PAH-contaminated brackish sediments

A study was conducted to determine polycyclic aromatic hydrocarbons (PAHs) distribution and microbial population changes in brackish sediments from an Italian lagoon included in the Ramsar List of Wetlands of International Importance. The presence and level of PAH-degrading bacteria were estimated by the most probable number (MPN) enumeration technique, whereas degradation capability towards target compounds was checked against loss of spiked PAHs (Phenanthrene, Anthracene and Fluoranthene) in MPN tubes after incubation in optimal conditions. Chemical analyses and microbiological counts suggested a potential for PAHs biodegradation by natural occurring populations of sediment microorganisms, thus indicating an "optimal range" in sediment PAHs concentrations, outside of which the natural selection of the indigenous microflora did not occur. The MPN procedure here described, provided an effective and reliable way to simultaneously determine microbial population densities and subsequent confirmation of the biodegradation capability of sediment indigenous microflora when exposed to laboratory and environmental concentrations of PAHs.     

Microhabitat preferences and depth distribution of combtooth blennies (Blenniidae) in the Gulf of Trieste (North Adriatic Sea)

The microhabitat preferences and depth distribution of blenniid species (Blenniidae) in the Gulf of Trieste (North Adriatic Sea) were surveyed using the all‐occurrence sampling method, a non‐destructive visual census method, aided by SCUBA diving. Fourteen species were identified during the entire survey. Four species showed to be indiscriminate in their microhabitat choice while 10 species were classified as infrequent in the surveyed coastal area. A statistically significant correlation was found between the blenniid assemblage and nine microhabitat variables. The blenniid assemblage was divided in two main groups, by the use of canonical correspondence analysis, electivity index, and the depth distribution analysis. The first group comprises species that dwell in surface waters and show a high positive correlation with boulders, the presence of Mytilus galloprovincialis, cirripeds and empty holes bored by Lithophaga lithophaga. The second group includes species that mostly inhabit deeper waters and show a high positive correlation with rocks covered by precoralligenous bioformations.     

Sources and biogeochemical cycling of particulate selenium in the San Francisco Bay estuary

As part of a study of estuarine selenium cycling, we measured the concentration, chemical form (speciation), and distribution of particulate selenium under various river flow conditions in the North San Francisco Bay (from the Golden Gate to the Sacramento and San Joaquin Rivers). We also conducted laboratory studies on the accumulation of selenium by phytoplankton, the critical first step in the transformation of dissolved to particulate selenium. Total particulate selenium concentration in the North SF Bay was relatively constant between high and low flow periods, ranging spatially from 0.05 to 0.35 nmol l⁻¹ and comprising between 5 and 12% of the total water column selenium inventory. Mean concentrations were generally highest in the Carquinez Strait–Suisun Bay region (salinity 0–17) and lowest in Central Bay. However, selenium content of suspended particles varied with river flow, with higher content during low flow (9.76 ± 4.17 nmol g⁻¹; mean ± sd; n = 67) compared to high flow (7.10 ± 4.24 nmol g⁻¹; n = 39). Speciation analyses showed that most particulate selenium is organic selenide (45 ± 27%), with a smaller proportion (typically <30%) of adsorbed selenite + selenate and a varying proportion (35 ± 28%) of elemental selenium. Based on the amount of elemental selenium in the seston (total suspended material), we calculate that resuspension of estuarine sediments could contribute 29–100% of particulate selenium in the water column. While selenium content of SF Bay seston (>0.4 μm) is relatively unenriched compared to phytoplankton (13.6–155 nmol g⁻¹ dry weight) on a mass basis, when normalized to carbon or nitrogen, seston contains a similar selenium concentration to SF Bay sediments or phytoplankton cultures. SF Bay seston is thus comprised of selenium-rich phytoplankton and phyto-detritus, but also inorganic clay mineral particles that effectively “dilute” total particulate selenium. Selenium concentrations in algal cultures (11 species) exposed to 90 nmol l⁻¹ selenite show relatively large differences in selenium accumulation, with the diatoms, chlorophytes and cryptophytes generally having lower selenium cell content (3.8 ± 2.7 × 10⁻⁹ nmol selenium cell⁻¹) compared to the dinoflagellates (193 ± 73 × 10⁻⁹ nmol selenium cell⁻¹). Because phytoplankton are such a rich (but variable) source of selenium, their dynamics could have a profound effect on the particulate selenium inventory in the North SF Bay.     

The pelagic community of a gravel pit lake: Significance of Coleps hirtus viridis (Prostomatida) and its role as a scavenger

Coleps hirtus viridis was the dominant species of the planktonic ciliate community of Lake Fühlinger See (Germany) during the study in 1999 and 2000. Total ciliate densities ranged from 120 to 42,000 ind. l⁻¹ in 1999 and up to 8,000 ind. l⁻¹ in 2000. Coleps contributed up to 98% to both total ciliate abundance and biomass and made up an average of 64% of the total ciliate biomass. Oligotrichs (Rimostrombidium, Strobilidium) dominated the epilimnetic zone, whereas peritrich ciliates (Pelagovorticella, Vorticella) were predominantly located in the hypolimnion. The population maximum of Coleps changed locations from the epilimnion in early summer to the hypolimnion (up to 40,000 ind. l⁻¹) during stratification. High growth rates in the hypolimnion, presence of endosymbiontic algae and the ability to ingest detritus seem to be important for the success.Growth rates of Coleps in June were determined by Landry-Hassett dilution experiments in both the epilimnion and the hypolimnion. The instantaneous growth rates were similar in both layers (0.6 d⁻¹), but a distinctly higher instantaneous mortality was estimated for the epilimnion. These high loss rates may be due to grazing pressure by cladocerans.The significance of the histophagous feeding of Coleps was evaluated through an experiment using killed zooplankton. Parts of Daphnia magna were incorporated at rates of about 1,100 μm³ ind.⁻¹ h⁻¹ by Coleps without endosymbiotic algae and at rates of 500 μm³ ind.⁻¹ h⁻¹ by Coleps with endosymbionts. These high feeding rates support the conclusion that Coleps can use dead organic matter as an additional food source.     

9: Processes of tectonism, magmatism and mineralization: Lessons from Europe

Metallogenic provinces in Europe range in age from the Archaean to the Neogene. Deposit types include porphyry copper and epithermal Cu–Au, volcanic-hosted massive sulphide (VMS), orogenic gold, Fe-oxide–Cu–Au, anorthosite Fe–Ti-oxide and sediment-hosted base-metal deposits. Most of them formed during short-lived magmatic events in a wide range of tectonic settings; many can be related to specific tectonic processes such as subduction, hinge retreat, accretion of island arcs, continental collision, lithosphere delamination or slab tear. In contrast, most sediment-hosted deposits in Europe evolved in extensional, continental settings over significant periods of time. In Europe, as elsewhere, ore formation is an integral part of the geodynamic evolution of the Earth's crust and mantle. Many tectonic settings create conditions conducive to the generation of water-rich magma, but the generation of ore deposits appears to be restricted to locations and short periods of change in temperature and stress, imposed by transitory plate motions. Crustal influence is evident in the strong structural controls on the location and morphology of many ore deposits in Europe. Crustal-scale fault–fracture systems, many involving strike-slip elements, have provided the fabric for major plumbing systems. Rapid uplift, as in metamorphic core complexes, and hydraulic fracturing can generate or focus magmatic–hydrothermal fluid flow that may be active for time spans significantly less than a million years. Once a hydrologically stable flow is established, ore formation is strongly dependent on the steep temperature and pressure gradients experienced by the fluid, particularly within the upper crust. In Europe, significant fracture porosity deep in the crystalline basement (1%) is not only important for magmatic–hydrothermal systems, but allows brines to circulate down through sedimentary basins and then episodically upward, expelled seismically to produce sediment-hosted base-metal deposits and Kupferschiefer copper deposits. Emerging research, stimulated by GEODE, can improve the predicting power of numerical simulations of ore-forming processes and help discover the presence of orebodies beneath barren overburden.     

Argon isotope fractionation induced by stepwise heating

Noble gas isotopes are widely used to elucidate the history of the rocks in which they have been trapped, either from distinct reservoirs or by accumulation following radioactive decay. To extract noble gases from their host rocks, stepwise heating is the most commonly used technique to deconvolve isotopically different components, e.g., atmospheric, in situ radiogenic, or excess radiogenic from mantle or crustal reservoirs. The accurate determination of the isotopic composition of these different components is of crucial importance, e.g., for ages obtained by ⁴⁰Ar-³⁹Ar stepheating plateaus. However, diffusion theory-based model calculations predict that the stepwise thermal extraction process from mineral phases induces isotope fractionation and, hence, adulterates the original composition. Such effects are largely unconsidered, as they are small and a compelling experimental observation is lacking. We report the first unequivocal evidence for significant mass fractionation of argon isotopes during thermal extraction, observed on shungite, a carbon-rich Precambrian sedimentary rock. The degree of fractionation, as monitored by ³⁸Ar/³⁶Ar and ⁴⁰Ar/³⁶Ar ratios, very well agrees with theoretical predictions assuming an inverse square root dependence of diffusion coefficient and atomic mass, resulting in easier extraction of lighter isotopes. Hence, subatmospheric ⁴⁰Ar/³⁶Ar ratios obtained for argon extracted at low temperatures may not represent paleoatmospheric argon. Shungite argon resembles modern atmospheric composition, but constraints on the timing of trapping appear difficult to obtain, as shungites are multicomponent systems.In ⁴⁰Ar-³⁹Ar stepwise heating, the isotope fractionation effect could cause systematic underestimations of plateau ages, between 0.15 and 0.4% depending on age, or considerably higher if samples contain appreciable atmospheric Ar. The magnitude of this effect is similar to the presently achieved uncertainties of this increasingly precise dating technique. Our results also indicate the importance of thermally activated diffusion as a possible fractionation mechanism, e.g., for hydrothermal gas exhalations, or for carbonaceous carrier phases such as “Q” in meteorites that have been suggested as carriers of highly fractionated noble gas residues from the early solar nebula.     

Forecasting rock slope failure: how reliable and effective are warning systems?

Warning systems are increasingly applied to reduce damage caused by different magnitudes of rockslides and rockfalls. In an integrated risk-management approach, the optimal risk mitigation strategy is identified by comparing the achieved effectiveness and cost; estimating the reliability of the warning system is the basis for such considerations. Here, we calculate the reliability and effectiveness of the warning system installed in Preonzo prior to a major rockfall in May 2012. “Reliability” is defined as the ability of the warning system to forecast the hazard event and to prevent damage. To be cost-effective, the warning system should forecast an event with a limited number of false alarms to avoid unnecessary costs for intervention measures. The analysis shows that to be reliable, warning systems should be designed as fail-safe constructions. They should incorporate components with low failure probabilities, high redundancy, have low warning thresholds, and additional control systems. In addition, the experts operating the warning system should have limited risk tolerance. In an additional hypothetical probabilistic analysis, we investigate the effect of the risk attitude of the decision makers and of the number of sensors on the probability of detecting the event and initiating a timely evacuation, as well as on the related intervention cost. The analysis demonstrates that quantitative assessments can support the identification of optimal warning system designs and decision criteria.     

Towards new applications of underwater photogrammetry for investigating coral reef morphology and habitat complexity in the Myeik Archipelago,Myanmar

Photogrammetry represents a non-destructive, cost-effective tool for coral reef monitoring, able to integrate traditional remote sensing techniques and support researchers’ work. However, its application to submerged habitats is still in early stage. We present new ways to employ Structure from Motion techniques to infer properties of reef habitats. In particular, we propose the use of Digital Surface Models and Digital Terrain Models for assessing coral colonies extension and height and discriminating between seabed and coral cover. Such information can be coupled with digital rugosity estimates to improve habitat characterization. DTM, DSM and orthophotos were derived and used to compute a series of metrics like coral morphologies, reef topography, coral cover and structural complexity. We show the potentialities offered by underwater photogrammetry and derived products to provide useful basic information for marine habitat mapping, opening the possibility to extend these methods for large-scale assessment and monitoring of coral reefs.     

Using Clustered Heat Maps in Mineral Exploration to Visualize Volcanic-Hosted Massive Sulfide Alteration and Mineralization

Natural Resources Research - This study proposes an extension of a visualization approach common in biochemistry (the clustered heat maps—CHMs) to geochemical data with the main objective of...