Environmental tracers as indicators of karst conduits in groundwater in South Dakota,USA

Environmental tracers sampled from the carbonate Madison aquifer on the eastern flank of the Black Hills, South Dakota, USA indicated the approximate locations of four major karst conduits. Contamination issues are a major concern because these conduits are characterized by direct connections to sinking streams, high groundwater velocities, and proximity to public water supplies. Objectives of the study were to estimate approximate conduit locations and assess possible anthropogenic influences associated with conduits. Anomalies of young groundwater based on chlorofluorocarbons (CFCs), tritium, and electrical conductivity (EC) indicated fast moving, focused flow and thus the likely presence of conduits. δ¹⁸O was useful for determining sources of recharge for each conduit, and nitrate was a useful tracer for assessing flow paths for anthropogenic influences. Two of the four conduits terminate at or near a large spring complex. CFC apparent ages ranged from 15 years near conduits to >50 years in other areas. Nitrate-N concentrations >0.4 mg/L in groundwater were associated with each of the four conduits compared with concentrations ranging from <0.1 to 0.4 mg/L in other areas. These higher nitrate-N concentrations probably do not result from sinking streams but rather from other areas of infiltration.     

Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity

The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow.     

Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study

The stratified water column of the Black Sea is partitioned into oxic, suboxic, and euxinic zones, each characterized by different biogeochemical processes and by distinct microbial communities. In 2003, we collected particulate matter by large volume in situ filtration at the highest resolution to date for lipid biomarker analysis and bacterioplankton for enumeration of major prokaryotic groups. Abundances of several prokaryotic groups were estimated using CARD-FISH probes specific for Bacteria, Archaea (Crenarchaeota and Euryarchaeota), epsilonproteobacteria (mainly sulfide oxidizers) and sulfate reducing bacteria. We also measured a wide range of bacterial and archaeal lipid biomarkers. Depth distributions of diagnostic biomarkers are matched with zonation of microbial processes, including aerobic bacterial oxidation of methane, oxidation of ammonium by bacteria and archaea, metal reduction, and sulfide oxidation at the chemocline, and bacterial sulfate reduction and anaerobic oxidation of methane by archaea in the anoxic zone. Cell densities for archaea and sulfate reducing bacteria are estimated based on water column biomarker concentrations and compared with CARD-FISH results.     

Inactive and relict rock glaciers of the Deboullie Lakes Ecological Reserve,northern Maine,USA

Lobate talus slopes in the Deboullie Lakes Ecological Reserve (DLER) of northern Maine exhibit parabolic profiles characteristic of inactive and relict talus‐derived rock glaciers. Vegetated rock glacier surfaces suggest that the landforms are no longer active, and lobes comprising two DLER rock glaciers document periods of past growth. Observations of perennial subsurface ice are supported by datalogger temperature measurements, indicating that sporadic permafrost exists throughout the DLER. We compare the DLER rock glaciers, along with similar features elsewhere in New England and adjacent Québec, to the modern alpine permafrost distribution. Results indicate that a mean annual temperature cooling of ～6°C is required to promote active rock glacier growth. Ages of plant remains recovered from the basal sediments of a local pond constrain deglaciation to before 11 320 ¹⁴C a BP, and core stratigraphy and organic content reveal that a periglacial environment persisted during the early postglacial era. Thus, we hypothesise that the DLER rock glaciers were active during Lateglacial time despite the lack of glacier activity in the region. We take this to suggest that north‐eastern US rock glaciers formed in response to mean annual temperatures skewed towards the frigid winters of the Younger Dryas chronozone. Copyright © 2009 John Wiley & Sons, Ltd.     

Genomic resources for the spotted ragged-tooth shark Carcharias taurus

Genomic data can be a useful tool in the management and conservation of biodiversity. Here, we report the development of genomic resources for the spotted ragged-tooth shark Carcharias taurus using genome-wide DNA data from Illumina next-generation sequencing. We explored two commonly used genetic marker types: microsatellites and mitochondrial DNA. A total of 4 394 putative microsatellites were identified, of which 10 were tested on 24 individuals and found to have ideal properties for population genetic analyses. Additionally, we reconstructed the first complete mitochondrial genome of a South African spotted ragged-tooth shark, and highlight the most informative gene regions to facilitate future primer design. The data reported here may serve as a resource for future studies and can ultimately be applied in the sustainable conservation and fisheries management of this apex predator.     

Organic biomarkers in the twilight zone—Time series and settling velocity sediment traps during MedFlux

The transfer of material through the twilight zone of the ocean is controlled by sinking particles that contain organic matter (OM) and mineral ballast. During the MedFlux field program in the northwestern Mediterranean Sea in 2003, sinking particulate matter was collected in time series (TS) and settling velocity (SV) traps and analyzed for amino acids, lipids, and pigments (along with ballast minerals) [Lee, C., Armstrong, R.A., Wakeham, S.G., Peterson, M.L., Miquel, J.C., Cochran, J.K., Fowler, S.W., Hirschberg, D., Beck, A. Xue, J., 2009b. Particulate matter fluxes in time series and settling velocity sediment traps in the northwestern Mediterranean Sea. Deep-Sea Research II, this volume [doi:10.1016/j.dsr2.2008.12.003]]. The goal was to identify how organic chemical compositions of sinking particles varied as a function of their in-situ settling velocity. The TS record was used to define the biogeochemical character and temporal pattern in flux during the period of SV trap deployment. Temporal variations in organic and mineral compositions are consistent with particle biogeochemistry being driven by the seasonal succession of phytoplankton. Spring diatom bloom conditions led to a high flux of rapidly sinking aggregates and zooplankton fecal matter; summer oligotrophy followed and was characterized by a higher proportion of slowly sinking phytoplankton cells. Bacterial degradation is particularly important during the low-flux summer period. Settling velocity traps show that a large proportion of particulate organic matter sinks at 200–500 m d⁻¹. Organic compositions of this fast-sinking material mirrors that of fecal pellets and aggregated material that sinks as the spring bloom terminates. More-slowly sinking OM bears a stronger signature of bacterial degradation than do the faster-sinking particles. The observation that compositions of SV-sorted fractions are different implies that the particle field is compositionally heterogeneous over a range of settling velocities. Thus physical and biological exchange between fast-sinking and slow-sinking particles as they pass down the water column must be incomplete.     

Molecular research on the systematically challenging smoothhound shark genus Mustelus: a synthesis of the past 30 years

The species-rich genus Mustelus (smoothhounds) of the shark family Triakidae is one of the most bio-economically important groups of elasmobranchs in the world’s oceans. Despite the commercial value of Mustelus, the systematics of the group remains largely unresolved and there is no global review or synthesis of knowledge about the conservation status and conservation genetics of smoothhounds across all oceanic regions. Here, we analysed published studies as well as grey literature to gain insight into the biogeographic, ecological and behavioural factors that shape genetic diversity in smoothhounds, and we identify critical knowledge gaps. From a series of molecular phylogenetic studies it can be inferred that the genus Mustelus is paraphyletic and that the aplacental species evolved secondarily from the placental species of the genus. The increasing availability of genetic data aids in disentangling systematic issues, such that more meaningful morphological characters can be chosen for use in practical field-identification keys for co-occurring smoothhounds. An integrative taxonomic approach to the genus Mustelus may offer the best chance of recording and protecting the biodiversity of these sharks. Furthermore, it is evident that different smoothhound species exhibit unique gene-flow patterns, suggesting varying rates within species and hence that species-level conservation approaches would be most appropriate. Molecular studies have advanced our understanding of smoothhound biology (including reproductive traits), ecology and evolution. While many knowledge gaps remain, a crucial lesson from this review is that, when doing assessments on a molecular level, it is important to place genetic results in a broader context, by assimilating biological and ecological data, if definitive conclusions are to be drawn.     

Depositional process and alluvial fan-drainage basin morphometric relationships near banff,Alberta, Canada

Two distinct types of alluvial fans occur in the Bow River Valley, Alberta, Canada: fluvially dominated and debris flow dominated. Large, gently sloping fans dominated by fluvial processes are associated with large and less rugged drainage basins, and small rugged basins have produced small, steep fans dominated by debris flow processes. Quantitative analysis demonstrates that strong fan-basin morphometric relationships occur despite a short fan history. Statistical analysis of fan area-basin area relationships indicate that debris flow fan areas do not increase in size as quickly as contributing basins. The relationship of fluvial fan area to basin area is not statistically significant. However, this relationship is probably affected by fan erosion. Examination of fan slope to basin ruggedness relationships indicates that fan slope increases more rapidly than basin ruggedness for both fan types. This is likely related to non-linear discharge and sediment size effects on fluvial fans, and reworking of larger fan surfaces by fluvial processes on debris flow fans.     

Vertical accretion of flood deposits and deeply stratified archaeological site formation in Central Maine,USA

Investigation of deeply stratified archaeological sites on the Piscataquis River in central Maine has revealed a continuous sequence of human occupation from ca. 10,000 yr B.P. to the near present. As an integrated aspect of the archaeological excavations, geomorphic features and surficial deposits were mapped from aerial photographs and field checked. Stratigraphic profiles were recorded from various locations and sediment column samples were collected and analyzed for grain size distribution in 1-cm vertical intervals from a 3-m deep excavation at the Sharrow site (ME 90-2D) to examine the flood deposits. Results include a general chronology of fluvial processes of the Piscataquis River since deglaciation and evidence of dominant vertical accretion of flood sediments on floodplain terraces throughout the Holocene epoch. This article defines an archaeologically significant but rarely recognized depositional regime characterized by a laterally controlled river channel and the exclusive vertical accretion of flood sediments. © 1994 John Wiley & Sons, Inc.     

KML在OneGeology和Google Earth之间的桥接作用浅析

为了促进全球范围内的地质图数据网络共享,国际地球科学联合会发起了OneGeology项目。目前该项目已经得到超过100个国家和地区和大量国际组织的参与,且已有40多个国家和地区在OneGeology项目的网站上登记了共享的地质图数据。由于这些数据源的服务器由各参与国的地质调查机构自己负责,OneGeology网站本身只通过一个数据接口OneGeology Portal提供对这些分布式数据源的浏览窗1：2。同时,另外一个重要的功能就是通过OneGeology Portal把选择的数据导出为KML文件,通过在Google Earth中打开该KML文件,可以把对应的数字地质图和和其他数据叠加浏览和分析,这也扩大了地质图数据的使用方式和服务目的。本文对KML文件在OneGeology和Google Earth之间的这种桥接作用做了分析并介绍了具体的操作过程。