The effects of solution chemistry on the sticking efficiencies of viable Enterococcus faecalis: An atomic force microscopy and modeling study

Atomic force microscopy (AFM) and Derjaguin-Landau-Verwey-Overbeek (DLVO) theory in combination with the interaction force boundary layer (IFBL) model have been used to empirically and theoretically calculate sticking efficiencies (α) of Enterococcus faecalis cells against a silica glass surface. Sticking efficiencies were calculated in solutions of varying pH and ionic strength and related to maximum distances of transport through a hypothetical soil block using colloid filtration theory.AFM measurements show that the repulsive and attractive forces between E. faecalis cells and a glass surface are a function of ionic strength but are less sensitive to changes in solution pH. Zeta (ζ)-potential measurements of the cells and glass surfaces correlate with these trends. Calculated DLVO energy profiles predict much greater sensitivity to changing solution chemistry. Sticking efficiencies derived from AFM measurements range from 9.6 × 10⁻¹⁷ to 1 in solutions of low ionic strength (IS) and from 2.6 × 10⁻³³ to 1 at higher IS. Corresponding α values determined from DLVO theory are essentially zero in all tested solutions.Sticking efficiencies calculated in this study are smaller than values determined from column and field studies in similar systems; however, α derived from AFM data and the IFBL model more closely represent field data than do values calculated from DLVO energy values. A comparison with different methods of calculating α suggests that reversible adhesion may be significant in column-scale transport studies.     

Sedimentology of the continental end‐Permian extinction event in the Sydney Basin,eastern Australia

Upper Permian to Lower Triassic coastal plain successions of the Sydney Basin in eastern Australia have been investigated in outcrop and continuous drillcores. The purpose of the investigation is to provide an assessment of palaeoenvironmental change at high southern palaeolatitudes in a continental margin context for the late Permian (Lopingian), across the end‐Permian Extinction interval, and into the Early Triassic. These basins were affected by explosive volcanic eruptions during the late Permian and, to a much lesser extent, during the Early Triassic, allowing high‐resolution age determination on the numerous tuff horizons. Palaeobotanical and radiogenic isotope data indicate that the end‐Permian Extinction occurs at the top of the uppermost coal bed, and the Permo‐Triassic boundary either within an immediately overlying mudrock succession or within a succeeding channel sandstone body, depending on locality due to lateral variation. Late Permian depositional environments were initially (during the Wuchiapingian) shallow marine and deltaic, but coastal plain fluvial environments with extensive coal‐forming mires became progressively established during the early late Permian, reflected in numerous preserved coal seams. The fluvial style of coastal plain channel deposits varies geographically. However, apart from the loss of peat‐forming mires, no significant long‐term change in depositional style (grain size, sediment‐body architecture, or sediment dispersal direction) was noted across the end‐Permian Extinction (pinpointed by turnover of the palaeoflora). There is no evidence for immediate aridification across the boundary despite a loss of coal from these successions. Rather, the end‐Permian Extinction marks the base of a long‐term, progressive trend towards better‐drained alluvial conditions into the Early Triassic. Indeed, the floral turnover was immediately followed by a flooding event in basinal depocentres, following which fluvial systems similar to those active prior to the end‐Permian Extinction were re‐established. The age of the floral extinction is constrained to 252.54 ± 0.08 to 252.10 ± 0.06 Ma by a suite of new Chemical Abrasion Isotope Dilution Thermal Ionization Mass Spectrometry U‐Pb ages on zircon grains. Another new age indicates that the return to fluvial sedimentation similar to that before the end‐Permian Extinction occurred in the basal Triassic (prior to 251.51 ± 0.14 Ma). The character of the surface separating coal‐bearing pre‐end‐Permian Extinction from coal‐barren post‐end‐Permian Extinction strata varies across the basins. In basin‐central locations, the contact varies from disconformable, where a fluvial channel body has cut down to the level of the top coal, to conformable where the top coal is overlain by mudrocks and interbedded sandstone–siltstone facies. In basin‐marginal locations, however, the contact is a pronounced erosional disconformity with coarse‐grained alluvial facies overlying older Permian rocks. There is no evidence that the contact is everywhere a disconformity or unconformity.     

A probabilistic framework for improving reverse geocoding output

Reverse geocoding, which transforms machine‐readable GPS coordinates into human‐readable location information, is widely used in a variety of location‐based services and analysis. The output quality of reverse geocoding is critical because it can greatly impact these services provided to end‐users. We argue that the output of reverse geocoding should be spatially close to and topologically correct with respect to the input coordinates, contain multiple suggestions ranked by a uniform standard, and incorporate GPS uncertainties. However, existing reverse geocoding systems often fail to fulfill these aims. To further improve the reverse geocoding process, we propose a probabilistic framework that includes: (1) a new workflow that can adapt all existing address models and unitizes distance and topology relations among retrieved reference data for candidate selections; (2) an advanced scoring mechanism that quantifies characteristics of the entire workflow and orders candidates according to their likelihood of being the best candidate; and (3) a novel algorithm that derives statistical surfaces for input GPS uncertainties and propagates such uncertainties into final output lists. The efficiency of the proposed approaches is demonstrated through comparisons to the four commercial reverse geocoding systems and through human judgments. We envision that more advanced reverse geocoding output ranking algorithms specific to different application scenarios can be built upon this work.     

Surface complexation modeling of Cu(II) adsorption on mixtures of hydrous ferric oxide and kaolinite

Background  

The application of surface complexation models (SCMs) to natural sediments and soils is hindered by a lack of consistent models and data for large suites of metals and minerals of interest. Furthermore, the surface complexation approach has mostly been developed and tested for single solid systems. Few studies have extended the SCM approach to systems containing multiple solids.     

Petrology and genetic significance of an ultramafic xenolith suite from Tahiti

A suite of ultramafic xenoliths 2–10 cm in size occurs in basanite near Papeete, Tahiti, and consists of spinel lherzolites with minor dunites and wehrlites. Petrographic examination of xenoliths reveals that they are typically coarse grained with well-developed annealed textures. Microprobe analyses of constituent minerals in 11 xenoliths indicate that bulk compositions of xenoliths are magnesian but with significant variability from xenolith to xenolith especially in Fe/Mg and Cr/Al ratios and in absolute amounts of Al₂O₃ and Cr₂O₃. Within any single xenolith, however, coexisting minerals are homogeneous and appear to be compositionally equilibrated. Geothermometry of coexisting orthopyroxene and augite indicates temperatures of equilibration of about 1100°C but there is considerable uncertainty in this estimate due to significant non-quadrilateral pyroxene substitutions. There is no accurate way to determine pressures, but the ubiquity of Cr-poor spinel and absence of garnet imply pressures less than about 15–20 kbar.The margins of most xenoliths show significant alteration through reaction with enclosing alkaline magma. Principal reaction features include zoning of spinels and olivines toward compositions in equilibrium with the magma, and reaction-melting of orthopyroxene to a symplectite of olivine plus silica-rich glass. Glass composition profiles across the symplectites indicate that alkalis, titanium and aluminum diffused into the symplectite from the magma and that silica diffused into the magma. All glass analyses show very low iron, magnesium and calcium.Xenolith mineral assemblages and chemistry indicate their origin in the upper mantle at relatively shallow depths. They are therefore not related genetically to the enclosing basanite magma which came from deeper in the mantle, but rather are accidental fragments of country rock picked up by magma on its way to the surface. The details of the reaction features strongly imply that the magma had partially crystallized by the time it reacted with xenoliths, possibly while still in the mantle.     

A comparison of network model creation algorithms based on the quality of wayfinding results

Various network model creation algorithms have been introduced to demonstrate a better approximation of the actual walking pattern and to provide a better wayfinding guide. However, it is under‐investigated which algorithm creates the most appropriate indoor navigation network model in the context of wayfinding applications. Due to the lack of discussion, some studies unconsciously extended an algorithm designed for creating an outdoor navigation network model to indoor space applications. This is problematic because indoor space has different spatial contexts from outdoor space, such as non‐linear space and no‐designated walking space. Our solution is to select five well‐known algorithms that have been introduced, to reproduce the algorithm for the automated construction of the indoor navigation network model, and to evaluate the applicability of algorithms for indoor wayfinding applications. This article compares the quality of wayfinding results from the output of the indoor navigation network model against two criteria: route efficiency (i.e., length) and route simplicity (i.e., number of directions). Our statistical analysis illustrates that the visibility graph algorithm is the most appropriate for indoor wayfinding applications.     

Model systems for anatexis of pelitic rocks

Subsolidus and melting reactions involving calcic plagioclase in pelitic assemblages in the K-Na-Ca model system occur at higher temperatures than their K-Na counterparts. For the most calcic plagioclase compositions observed in high-grade pelitic rocks (An₂₅-An₄₀) the equilibria are rarely extended by more than 30 ° C above those in KA1O₂-NaAlO₂-Al₂O₃-SiO₂-H₂O, although all discontinuities in facies inferred for the K-Na system are continuously displaced when they involve Ca-bearing plagioclase. The maximum pressure-temperature overlap between muscovite dehydration and initial melting reactions occurs in the pressure range of 4–6 kbar between about 640 ° and 720 ° C. This provides optimum conditions for anatectic melt generation in felsic rocks of the appropriate compositions progressively metamorphosed in kyanite-sillimanite facies series. Progressive regional metamorphism at pressures of 2–4 kbar, corresponding to andalusite-sillimanite facies series, shows little overlap between muscovite dehydration and initial melting reactions. Consequently anatectic melt generation in andalusite-sillimanite facies series would require the participation of biotite in dehydration-melting reactions. Felsic intrusive rock in andalusite-sillimanite terranes could have risen upward from their anatectic sites in high grade kyanite-sillimanite facies series at depth. Many andalusite-sillimanite facies series terranes culminating in migmatites could represent upward movement of kyanite-sillimanite facies series rocks to shallower depths with uplift rates faster than cooling rates.     

A comparison of estimated and calculated effective porosity

 Effective porosity in solute-transport analyses is usually estimated rather than calculated from tracer tests in the field or laboratory. Calculated values of effective porosity in the laboratory on three different textured samples were compared to estimates derived from particle-size distributions and soil–water characteristic curves. The agreement was poor and it seems that no clear relationships exist between effective porosity calculated from laboratory tracer tests and effective porosity estimated from particle-size distributions and soil–water characteristic curves. A field tracer test in a sand-and-gravel aquifer produced a calculated effective porosity of approximately 0.17. By comparison, estimates of effective porosity from textural data, moisture retention, and published values were approximately 50–90% greater than the field calibrated value. Thus, estimation of effective porosity for chemical transport is highly dependent on the chosen transport model and is best obtained by laboratory or field tracer tests. Received, March 1997 · Revised, August 1997 · Accepted, August 1997