Cloning of a chub metallothionein cDNA and development of competitive RT-PCR of chub metallothionein mRNA as a potential biomarker of heavy metal exposure

Metallothionein has been assayed in a range of aquatic animal tissues as an indicator of metal exposure. We sequenced chub (Leuciscus cephalus) metallothionein cDNA which showed over 90% homology to common carp, goldfish and stone loach and 77% homology to rainbow trout sequences for metallothionein. We then used the extended primer method to develop an accurate quantitative competitive RT-PCR assay for metallothionein mRNA. RT-PCR was used to measure metallothionein mRNA in feral chub from a range of field sites, with different levels of heavy metal pollution, in the West Midlands, UK. Measurements were complemented by analysis of liver and gill metallothionein protein by capillary electrophoresis. There was no significant difference in the metallothionein protein levels between fish of different rivers and there was no evidence of elevation of mRNA at the sites of highest metal exposure. The level of metal exposure (e.g. zinc, nickel and cadmium each ranging between 15 and 28 microg/l ) at the pH (7.5-8.5) of these rivers appears insufficient to elevate hepatic or gill metallothionein in chub. A lack of elevation of hepatic metallothionein mRNA in chub exposed to zinc, copper and manganese for 24 h and 10 days in the laboratory also suggests a non-responsiveness of this species.     

A Block-Based Theoretical Model Suited to Gravitational Sliding

An original theoretical model has been devised to simulate mass flow over hill slopes due to gravitational sliding. The sliding mass is discretized into a sequence of contiguous blocks which are subjected to gravitational forces, to bottom friction and to surface resistance stresses that are generally negligible for subaerial flows, but are relevant for submarine slides. The blocks interact with each other while sliding down the hill flanks because of internal forces that dissipate mechanical energy and produce a momentum exchange between the individual blocks, yet conserving the total momentum of the mass. Internal forces are expressed in terms of interaction coefficients depending on the instantaneous distance between the block centers of mass, which is a measure of the deformation experienced by the blocks: the functional dependence includes three parameters, namely the interaction intensity ¯, the deformability parameter and the shape parameter , by means of which a wide range of interaction types can be fully accounted for. The time integration is performed numerically by solving the equations for the block velocities and positions at any time ti by means of the block accelerations at the previous time t_i-1, and by subsequently updating the block accelerations, which allows to proceed iteratively to the following times. The model has been tested against laboratory results available from literature and by means of several numerical experiments involving a simplified geometry both for the sliding body and the basal surface, with the purpose of clarifying the influence of the model parameters on the slide dynamics. The model improves the performance of the existing kinematic models for slides, moreover preserving an equivalent numerical simplicity. Future applications and possible improvements of this model are suggested.     

Atmospheric nitrogen inputs into the North Sea: effect on productivity

The ANICE (Atmospheric Nitrogen Inputs into the Coastal Ecosystem) project addressed the atmospheric deposition of nitrogen to the North Sea, with emphasis on coastal effects. ANICE focused on quantifying the deposition of inorganic nitrogen compounds to the North Sea and the governing processes. An overview of the results from modelling and experimental efforts is presented. They serve to identify the role of the atmosphere as a source of biologically essential chemical species to the marine biota. Data from the Weybourne Atmospheric Observatory (UK) are used to evaluate the effect of short episodes with very high atmospheric nitrogen concentrations. One such episode resulted in an average deposition of 0.8 mmol N m⁻² day⁻¹, which has the potential to promote primary productivity of 5.3 mmol C m⁻² day⁻¹. This value is compared to long-term effects determined from model results. The total calculated atmospheric deposition to the North Sea in 1999 is 948 kg N km⁻¹, i.e. 0.19 mmol N m⁻² day⁻¹ which has the potential to promote primary productivity of 1.2 mmol C m⁻² day⁻¹. Detailed results for August 1999 show strong gradients across the North Sea due to adjacent areas where emissions of NO_x and NH₃ are among the highest in Europe. The average atmospheric deposition to the southern part of the North Sea in August 1999 could potentially promote primary production of 2.0 mmol C m⁻² day⁻¹, i.e. 5.5% of the total production at this time of the year in this area of the North Sea. For the entire study area the atmospheric contribution to the primary production per m² is about two-third of this value. Most of the deposition occurs during short periods with high atmospheric concentrations. This atmospheric nitrogen is almost entirely anthropogenic in origin and thus represents a human-induced perturbation of the ecosystem.     

Potential Salinity and Temperature Futures for the Chesapeake Bay Using a Statistical Downscaling Spatial Disaggregation Framework

Estuaries are productive and ecologically important ecosystems, incorporating environmental drivers from watersheds, rivers, and the coastal ocean. Climate change has potential to modify the physical properties of estuaries, with impacts on resident organisms. However, projections from general circulation models (GCMs) are generally too coarse to resolve important estuarine processes. Here, we statistically downscaled near-surface air temperature and precipitation projections to the scale of the Chesapeake Bay watershed and estuary. These variables were linked to Susquehanna River streamflow using a water balance model and finally to spatially resolved Chesapeake Bay surface temperature and salinity using statistical model trees. The low computational cost of this approach allowed rapid assessment of projected changes from four GCMs spanning a range of potential futures under a high CO₂ emission scenario, for four different downscaling methods. Choice of GCM contributed strongly to the spread in projections, but choice of downscaling method was also influential in the warmest models. Models projected a ~2–5.5 °C increase in surface water temperatures in the Chesapeake Bay by the end of the century. Projections of salinity were more uncertain and spatially complex. Models showing increases in winter-spring streamflow generated freshening in the Upper Bay and tributaries, while models with decreased streamflow produced salinity increases. Changes to the Chesapeake Bay environment have implications for fish and invertebrate habitats, as well as migration, spawning phenology, recruitment, and occurrence of pathogens. Our results underline a potentially expanded role of statistical downscaling to complement dynamical approaches in assessing climate change impacts in dynamically challenging estuaries.     

Large wood transport modelling by a coupled Eulerian–Lagrangian approach

The paper discusses a model which predicts the trajectory of floating rigid bodies and may be applied to compute the motion of woody “debris” mobilized during floods. The model couples a Discrete Element (DE) Lagrangian approach for the calculation of motion of rigid bodies with the Eulerian solution of the shallow water equations (SWE), in order to simulate the transport of a cylinder in a two-dimensional stream. It differs from existing models since it is based on a dynamic approach, adapting the Basset–Boussinesq–Oseen equation. In a first step, forces are computed from flow and log velocities; then, the equations of dynamics are solved to model the planar roto-translation of the body. Model results and physical reliability are clearly affected by the values of the drag and side coefficients, especially since logs, modelled as cylinders, are able to change their orientation towards the flow. Experimental studies to evaluate drag and side coefficients can be found in the literature for a submerged cylinder, with various orientations. To extend such results to the case of a floating log, the authors performed a series of laboratory tests on partially submerged cylinders, implementing the outcomes in the proposed DE-SWE model. The coupled model is validated against existing laboratory data concerning spheres and wooden cylinder transport.     

Clinopyroxenes from mantle-related xenocrysts in alkaline basalts from Hannuoba (China): augite–pigeonite exsolutions and their thermal significance

Optically homogeneous augite xenocrysts, closely associated with spinel–peridotite nodules, occur in alkali basalts from Hannuoba (Hebei province, China). They were studied by electron and X-ray diffraction to define the occurrence and significance of pigeonite exsolution microtextures. Sub-calcic augite (Wo₃₄) exsolved into En_62–62Fs_25–21Wo_13–17 pigeonite and En_46–45Fs_14–14Wo_40–42 augite, as revealed by TEM through diffuse coarser (001) lamellae (100–300 Å) and only incipient (100) thinner ones (<70 Å). C2/c augite and P2₁/c pigeonite lattices, measured by CCD-XRD, relate through a(Aug)?a(Pgt), b(Aug)?b(Pgt), c(Aug)≠c(Pgt) [5.278(1) vs 5.189(1)Å] and β(Aug)≠β(Pgt) [106.55(1) vs 108.55(2)°]. Cell and site volumes strongly support the hypothesis that the augite xenocrysts crystallised at mantle depth from alkaline melts. After the augite xenocrysts entered the magma, (001) lamellae first formed by spinodal decomposition at a T_min of about 1,100 °C, and coarsened during very rapid transport to the surface; in a later phase, possibly on cooling, incipient (100) lamellae then formed.     

An Imaging Photon Counting Intensified CCD for High Speed Photometry

The scientific performance evaluation of a photon countingimaging system is presented. The detector is constituted by an ICCD camera with RbTe photocathode(optimized for UV radiation), and dedicated electronics for the acquisition and analysis ofthe events. For each photon event on the CCD, a real-time centroid calculation is performed, inorder to reach spatial resolution down to 25 m FWHM. The system has been tested usingthe 182 cm telescope of the Asiago Observatory.A standard stars field through U Johnson filter,and the Crab pulsar (PSR 0531+21) were observed. From the photometric data, relative magnitudes of the standard stars have been derived, showing a goodlinearity of the detector in the range of flux under consideration, as expected fromprevious laboratory measurements.The pulsar's data have been processed by FFT and epoch foldingtechniques to testthe detector's timing performances in the highest resolutionmode (4.512 ms).These observations show that a space resolved time analysis ofperiodic sources can be performed with 10^-7 s accuracy.     

Natural background levels and threshold values derivation for naturally As, V and F rich groundwater bodies: a methodological case study in Central Italy

Natural background levels (NBL) and threshold values (TV) derivation is an important task for EU Member States to correctly assess the chemical status of groundwater bodies within the context of the recently adopted Groundwater Directive. Attempts are being made both by water authorities and scientific community to test application viability of proposed methods to different real situations and to develop tailored adjustments and refinements. The aim of this paper is to describe a methodological case study of NBL and TV determination in a large area (5,500 km²) located in Central Italy where both natural and anthropogenic contamination occurs, resulting in several substances be detected in ground waters with concentration frequently exceeding drinking water standards. This paper shows the key role played in the determination process by knowledge on the hydrogeological setting and hydrogeochemical features. The adoption of appropriate pre-selection criteria of samples, the establishment of TV at the groundwater body scale for natural origin substances, and the evaluation of TVs exceedances in a multiparameter context are experimentally discussed. Beyond the critical evaluation of NBL and TV determination method, this research aims at increasing consciousness in the water management agencies that groundwater status assessment should be conceived as a scientific evaluation procedure and not as a mere technical/administrative exercise to be performed using any set of available data. As such, it should be supported by adequate knowledge of hydrogeological setting, hydrochemical processes occurring in groundwater bodies, and human activities acting overland to be progressively verified.     

Polycyclic aromatic hydrocarbons and changes in the trophic structure of polychaete assemblages in sediments of Todos os Santos Bay, Northeastern, Brazil

Polycyclic aromatic hydrocarbons (PAHs) and the trophic structure of polychaete assemblages were studied in sediments at 28 stations in Todos os Santos Bay. Total PAH concentrations varied from 8 to 4163 ng g(-1) dry weight. The indexes used for the determination of PAH origin suggested both pyrolytic and petrogenic sources. A total of 397 individuals of polychaetes was recorded which were classified in three trophic groups. The PCA ordination resulted in the formation of three groups of stations, Group I characterised by sandy sediments, low organic content, low total PAH concentration and percentage of potentially harmful PAH was dominated by subsurface deposit-feeders. The other two groups (IIa and IIb), showed similar percentages of silt and clay, however, Group IIb formed by those stations with high total organic carbon, total nitrogen, sulphur contents, high total PAH concentration and percentage of potentially harmful PAH was dominated by carnivores. Trophic changes could be explained by the level of exposure to PAH effects relative to differences in the life style and feeding strategies between deposit-feeders and carnivores.