Stage-V copepodites of Calanus sinicus and Calanus jashnovi (Copepoda: Calanoida) in mesopelagic zone of Sagami Bay as identified with genetic markers, with special reference to their vertical distribution

We applied genetic makers to identify Calanus species occurring in Sagami Bay, Japan, in order to investigate their vertical distribution in the upper 1000 m. First, interspecific genetic distances of three gene loci, mitochondrial small ribosomal RNA (srRNA), nuclear internal transcribed spacers 1 (ITS1) and 2 (ITS2), were estimated from morphologically distinguishable adult females of Calanus sinicus, Calanus jashnovi and Calanus pacificus that were collected from Sagami Bay, the Kuroshio Extension and the Oyashio region, respectively. The highest levels of interspecific genetic distance were observed in srRNA, followed by ITS1 and ITS2. The intraspecific genetic distances within C. sinicus were much lower than the interspecific genetic distances, indicating that DNA sequences in these loci are consistent with the morphological differences. This information was used as a criterion for species identification based on DNA sequence variation, and allowed us to identify the fifth copepodites (CVs) or younger stages of these species. Next, the vertical distribution of Calanus species was investigated in Sagami Bay in May 2006, on the basis of a stratified sampling in the upper 1000 m. By applying the genetic markers, 23 individuals comprising all copepodite stages were allocated into either C. sinicus or C. jashnovi, and the small- and large-sized CVs were identified as C. sinicus and C. jashnovi, respectively. The total abundance of C. sinicus was highest at 0-50 m and decreased with depth. On the contrary, CV individuals of C. sinicus were abundant not only in 0-50 m but also below 200 m with minimum occurrences in 150-200 m depth. C. jashnovi was much less abundant than C. sinicus and comprised of only CIV and CV which occurred in the upper 100 m and deeper than 50 m depths, respectively. The abundance of C. sinicus in the 1000-m water column of Sagami Bay was at a level comparable to that in shelf waters, suggesting the importance of off-shelf individuals in the biological production and organic transport in the respective areas.     

Coastal aquifer system in late Pleistocene to Holocene deposits at Horonobe in Hokkaido,Japan

The groundwater flow systems and chemistry in the deep part of the coastal area of Japan have attracted attention over recent decades due to government projects such as geological disposal of radioactive waste. However, the continuous groundwater flow system moving from the shallow to deep parts of the sedimentary soft rock has not yet been characterized. Therefore, the Cl^–, δD and δ¹⁸O values of the pore water in the Horonobe coastal area in Hokkaido, Japan, were measured to 1,000 m below the ground surface, and a vertical profile of the pore-water chemistry was constructed to assist in elucidating groundwater circulation patterns in the coastal area. The results show that the groundwater flow regime may be divided into five categories based on groundwater age and origin: (1) fresh groundwater recharged by modern rainwater, (2) fresh groundwater recharged by paleo rainwater during the last glacial age, (3) low-salinity groundwater recharged during the last interglacial period, (4) mixed water in a diffusion zone, and (5) connate water consisting of paleo seawater. These results suggest that the appearance of hydrological units is not controlled by the boundaries of geological formations and that paleo seawater is stored in younger Quaternary sediments.     

Sediment organic matter source estimation and ecological classification in the semi-enclosed Batan Bay Estuary,Philippines

The large organic matter flow in tropical coastal areas is recognized as an important process in the global carbon(C)cycle.However,the nature of organic matter flow in semi-enclosed tropical estuaries remains unclear due to the various environmental processes(tidal change,river flow,waves from the sea,and internal circulation)and organic matter sources therein.Thus,sediment organic matter(SOM)sources,and their distribution pattern,are key to understanding ecosystem material flow.Our research in the Batan Bay Estuary,Philippines,a semi-enclosed estuary under large mangrove deforestation,was conducted to determine ecosystem properties through analysis of C and nitrogen stable isotope ratios and environmental factors.First,we determined that mangrove litter,microphytobenthos,and phytoplankton are the main SOM sources in the Batan Bay Estuary.Second,the estuary was classified into three ecological zones(the Bay zone,Back-barrier zone,and River zone).In addition,we estimated SOM source ratios using the Stable Isotope Analysis in R package and determined different organic matter sources in different zone.The high ratios of mangrove litter as SOM indicate that a large amount of terrestrial plant organic matter remains despite the heavy mangrove deforestation that has occurred since the 1980s,and that the Back-barrier zone consists of a different type of ecosystem that promotes accumulation of C from mangrove litter and microphytobenthos.     

Delayed impact of new volcanic ejecta on ground water quality

We observed long-term changes in the concentrations of dissolved ions in ground water caused by leachate from new volcanic ejecta deposited on the ground surface of the volcanic Miyakejima Island, Japan. Water samples were collected from nine wells and two rain collectors over a period of more than 10 years, and samples of runoff water were collected periodically. The samples were analyzed for temperature, pH, alkalinity, Cl⁻, and SO₄²⁻; some of the samples were also analyzed for δ¹³C. Because the leachate from the volcanic ejecta contained sulfate, we recorded an increase in SO₄²⁻ concentrations in the (unconfined) well water. The increase in SO₄²⁻ was initially detected between less than 1.4 and 5.2 years after the eruption, showing peak concentrations from 2.4 to 6.4 years after the eruption. This delayed response reflects the transit time of downward-moving SO₄²⁻ in the vadose zone, corresponding to an apparent movement rate of 0.4 to 7.2 cm/d. The rate relates to the mean recharge, represented as a fraction of local mean rainfall, and is calculated using the Cl⁻ balance method. The magnitude of the recorded increases reflects the volume of volcanic mudflow on the ground surface within the basin. For the management of ground water after an eruption, it is therefore important to know the chemical properties of the volcanic ejecta and the spatial distribution of mudflow to estimate the magnitude of the effect of ejecta on ground water quality.     

Raman spectra of methane hydrate up to 86 GPa

High-pressure Raman studies of methane hydrate were performed using a diamond anvil cell in the pressure range of 0.1–86 GPa at room temperature. Raman spectra of the methane molecules revealed that new softened intramolecular vibration mode of ν ₁ appeared at 17 GPa and that the splitting of vibration mode of ν ₃ occurred at 15 GPa. The appearance of these two modes indicates that an intermolecular attractive interaction increases between the methane molecules and the host water molecules and between the neighboring methane molecules. These interactions might result in the exceptional stability of a high-pressure structure, a filled ice Ih structure (FIIhS) for methane hydrate, up to 40 GPa. At 40 GPa, a clear change in the slope of the Raman shift versus pressure occurred, and above 40 GPa the Raman shift of the vibration modes increased monotonously up to 86 GPa. A previous XRD study showed that the FIIhS transformed into another new high-pressure structure at 40 GPa. The change in the Raman spectra at 40 GPa may be induced by the transition of the structure.     

Collapse and fragmentation of rotating magnetized clouds – I. Magnetic flux–spin relation

We discuss the evolution of the magnetic flux density and angular velocity in a molecular cloud core, on the basis of three-dimensional numerical simulations, in which a rotating magnetized cloud fragments and collapses to form a very dense optically thick core of  >5 × 10¹⁰ cm⁻³  . As the density increases towards the formation of the optically thick core, the magnetic flux density and angular velocity converge towards a single relationship between the two quantities. If the core is magnetically dominated its magnetic flux density approaches  1.5( n /5 × 10¹⁰ cm⁻³)^1/2 mG  , while if the core is rotationally dominated the angular velocity approaches  2.57 × 10⁻³ ( n /5 × 10¹⁰ cm⁻³)^1/2 yr⁻¹  , where n is the density of the gas. We also find that the ratio of the angular velocity to the magnetic flux density remains nearly constant until the density exceeds  5 × 10¹⁰ cm⁻³  . Fragmentation of the very dense core and emergence of outflows from fragments will be shown in the subsequent paper.     

Myojin Rift, Izu–Bonin Arc as the Modern Analog of Hokuroku Basin, Northeast Japan: Geotectonic Significance of the New Hydrothermal Deposit in the Back-Arc Rift

A huge hydrothermal field, named the "Hakurei Sulfide Deposit" (HSD) was discovered in the North Myojin Rift (NMR), Izu–Bonin Back-Arc Rift (BAR) during the 2003 survey cruise of R/V Hakurei-maru No.2 . This paper investigates the geotectonic features and the tectonic setting of ore deposits between the NMR and the Hokuroku Basin, which is representative of kuroko fields in Japan. The topographic features of the NMR and the Hokuroku Basin are similar. Both have a clear ring structure surrounded by faults and the east–west width is almost the same. Many kuroko deposits were formed on the extrusion centers of the five pre-mineral acidic volcanic complexes, located in a loop inside the Hokuroku Basin. In the case of the NMR, seven submarine volcanoes are also located in a loop, and the HSD formed inside the summit caldera of Bayonnaise Knoll, which is one of the seven volcanoes. These topographic similarities highlight that the NMR is a modern analog of the Hokuroku Basin. Identifying such similarities is extremely useful when prospecting kuroko deposits on land equivalents as well as on the other segments of the Izu–Bonin BAR. The probability of finding kuroko deposits on land is expected to increase when the following are identified: (i) location of back-arc rift and the volcanic front; (ii) direction of the arc–trench system and intra-rift faults (and/or fracture zone); (iii) position of submarine volcanoes surrounding a back-arc rift; and (iv) intersections of a caldera fault and intra-rift fault (and/or fracture zone) inside the summit caldera of submarine volcanoes. Within these aforementioned points a ring structure, acidic volcanic complexes that circle the circuit and submarine calderas along the volcanic front, are an important indication of submarine hydrothermal deposits.