Cloning of cytochrome P450 1A (CYP1A) genes from the hermaphrodite fish Rivulus marmoratus and the Japanese medaka Oryzias latipes

To use two small fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the Japanese medaka Oryzias latipes (Belloniformes) as testing models in molecular ecotoxicology, we have cloned the cytochrome P450 1A (CYP1A) gene after screening of both genomic DNA libraries, and sequenced 11,863 and 7,243 bp including all the exons and introns with promoter regions, respectively. The Rivulus and the medaka CYP1A gene consisted of seven exons (including non-coding exons) with high homology to mammals. In the promoter region, Rivulus CYP1A gene has seven xenobiotic response elements (XREs) and two metal response elements (MREs), while the Japanese medaka CYP1A gene has six XREs and four MREs. Interestingly, medaka CYP1A gene has a number of MREs at the promoter, which may affect its response on metal exposure. We describe here the gene structure of both fish CYP1A genes.     

Glaciomarine sedimentation and palaeo-glacial setting of Maxwell Bay and its tributary embayment, Marian Cove, South Shetland Islands, West Antarctica

High-resolution (3.5 kHz and multi-channel) seismic profiles and piston cores were collected from Maxwell Bay and its tributary embayment, Marian Cove, in the South Shetland Islands, Antarctica, during the Korea Antarctic Research Program (1992/93 and 1995/96) to elucidate the glaciomarine sedimentation processes and recent glacial history of the area. Seismic data from Maxwell Bay reveal a rugged bay margin and flattened basin floor covered with well-stratified hemipelagic muds. On the base-of-slope, acoustically transparent debris flows occur, indicating downslope resedimentation of glaciomarine sediments. Despite the subpolar and ice-proximal settings of Marian Cove, the seafloor is highly rugged with a thin sediment drape, suggesting that much of the area has been recently eroded by glaciers. Sediment cores from the cove penetrated three distinct fining-upward lithofacies: (1) basal till in the lower part of the core, accumulated just seaward of the grounding line of the tidewater glacier; (2) interlaminated sand and mud in the middle part, deposited in ice-proximal zone by a combination of episodic subglacial meltwater inflow and iceberg dumping; and (3) pebbly mud in the upper part, deposited in ice-distal zone by both surface meltwater plume and ice-rafting from the glacier front. A reconstruction of the glacial history of these areas since the late glacial maximum shows an ice sheet filling Maxwell Bay in late Wisconsin time and grounding of the tidewater glacier in Marian Cove until about 1300 yr BP.     

The Formation and Circulation of the Intermediate Water in the Japan Sea

In order to clarify the formation and circulation of the Japan/East Sea Intermediate Water (JESIW) and the Upper portion of the Japan Sea Proper Water (UJSPW), numerical experiments have been carried out using a 3-D ocean circulation model. The UJSPW is formed in the region southeast off Vladivostok between 41°N and 42°N west of 136°E. Taking the coastal orography near Vladivostok into account, the formation of the UJSPW results from the deep water convection in winter which is generated by the orchestration of fresh water supplied from the Amur River and saline water from the Tsushima Warm Current under very cold conditions. The UJSPW formed is advected by the current at depth near the bottom of the convection and penetrates into the layer below the JESIW. The origin of the JESIW is the low salinity coastal water along the Russian coast originated by the fresh water from the Amur River. The coastal low salinity water is advected by the current system in the northwestern Japan Sea and penetrates into the subsurface below the Tsushima Warm Current region forming a subsurface salinity minimum layer. This revised version was published online in August 2006 with corrections to the Cover Date.     

A comparison of several wave spectra for the random wave diffraction by a semi-infinite breakwater

A comparison of the diffraction of multidirectional random waves using several selected wave spectrum models is presented in this paper. Six wave spectrum models, Bretschneider, Pierson–Moskowitz, ISSC, ITTC, Mitsuyasu, and JONSWAP spectrum, are considered. A discrete form for each of the given spectrum models is used to specify the incident wave conditions. Analytical solutions based on both the Fresnel integrals and polynomial approximations of the Fresnel integrals and numerical solutions of a boundary integral approach have been used to obtain the two-dimensional wave diffraction by a semi-infinite breakwater at uniform water depth. The diffraction of random waves is based on the cumulative superposition of linear diffraction solution. The results of predicted random wave diffraction for each of the given spectrum models are compared with those of the published physical model presented by Briggs et al. [1995. Wave diffraction around breakwater. Journal of Waterway, Port, Coastal and Ocean Engineering—ASCE 121(1), 23–35]. Reasonable agreement is obtained in all cases. The effect of the directional spreading function is also examined from the results of the random wave diffraction. Based on these comparisons, the present model for the analysis of various wave spectra is found to be an accurate and efficient tool for predicting the random wave field around a semi-infinite breakwater or inside a harbor of arbitrary geometry in practical applications.     

Stratal patterns in the southwestern margin of the Ulleung Basin off southeast Korea: sequence architecture controlled by back-arc tectonism

 Major variations in type and rate of tectonic movement in the southwestern margin of the Ulleung Basin coincide in time with changes in stratal patterns at succession boundaries, suggesting that the effect of tectonism was dominant for the development of sequence architecture. During the back-arc opening (16–12 Ma), the rise of relative sea level and the high rate of sediment supply gave rise to sequences with sigmoid progradational patterns. During the back-arc closing (12–6.5 Ma), fall- and rise-dominated relative sea-level fluctuations resulted in sequences with varying stratal patterns depending upon changes in deposition rate. The rise-dominated relative sea level has been prevalent during the later stage (6.5 Ma–Present) with low sedimentation rate. Received: 16 January 1996 / Revision received: 7 February 1997     

Water mass formation variability in the intermediate layer of the east sea

Long-term variability in the intermediate layer of the eastern Japan Basin has been investigated to understand the variability of water mass formation in the East Sea. The simultaneous decrease of temperature at shallower depths and oxygen increasing at deeper depths in the intermediate layer took place in the late 1960’s and the mid-1980’s. Records of winter sea surface temperatures and air temperatures showed that there were cold winters that persisted for several years during those periods. Therefore, it was assumed that a large amount of newly-formed water was supplied to the intermediate layer during those cold winters. Close analysis suggests that the formation of the Upper Portion of Proper Water occurred in the late 1960’s and the Central Water in the mid-1980’s.     

Robust diagnostic modeling of the Japan Sea circulation

The Japan Sea circulation is numerically modeled with robust diagnostic terms included. The general features are nearly the same as previous prognostic models though small differences appear in local current fields, and agree with most of existing observation results. This model, however, seems to be more successful than prognostic ones in that the overshooting of the East Korean Warm Current, a northward western boundary current, is much reduced and the North Korean Cold Current, a southward western boundary current, is more enhanced. Based on the model results, discussions are made about the large convective structure and the global kinetic energy budget of the Japan Sea circulation.     

Species composition and spatial distribution of euphausiids of the yellow sea and relationships with environmental factors

We investigated species composition and spatial distribution of the euphausiid community in the Yellow Sea and identified the relationship with environmental factors (temperature, salinity, chlorophyll a, nitrate, phosphate, and silicate) using bimonthly data from June, 1997 to April, 1998. The environment varied during the sampling period. In warm seasons, thermocline was well developed rendering lower temperature and higher salinity and nutrient concentrations in the bottom layer. During cold seasons the water column was well mixed and no such vertical stratification was noted. Horizontal distribution of temperature, however, differed slightly between near-coast and offshore areas because of the shallow depth of the Yellow Sea, and between southern and northern areas because of the intrusion of water masses such as Yellow Sea Warm Current and Changjiang River Diluted Water. Four euphausiid species were identified:Euphausia pacifica, E. sanzoi, Pseudeuphausia sp. andStylocheron affine. E. sanzoi andS. affine were collected, just one juvenile each, from the southern area in June and December, respectively.Pseudeuphausia sp. were collected in the eastern area all the year round except June.E. pacifica occurred at the whole study area and were the predominant species, representing at least 97.6% of the euphausiid abundance. Further, the distribution pattern of the species was varied in regards to developmental stages (adult, furcilia, calyptopis, egg). From spring to fall,E. pacifica adults were abundant in the central area where the Yellow Sea Bottom Cold Water prevailed. Furcilia and calyptopis extended their distribution into nearly all the study area during the same period. From late fall to winter, adults were found at the near-coastal area with similar pattern for furcilia and calyptopis. The distribution pattern ofE. pacifica was consistent regarding temperature, salinity, and three nutrients during the sampling period, whereas chlorophyll a showed a different pattern according to the developmental stages. The nutrients should indirectly affect via chlorophyll a and phytoplankton concentration. With respect to these results, we presented a scenario about how the environmental factors along with the water current affect the distribution ofE. pacifica in the Yellow Sea.     

Yeosu dinosaur track sites of Korea: The youngest dinosaur track records in Asia

Eighty two dinosaur trackways were newly discovered in Upper Cretaceous lacustrine deposits on islands in the vicinity of Yeosu, Korea. Most dinosaur tracks occur in marginal lake deposits with polygonal desiccation cracks. The dinosaur tracks at the Yeosu site include 65 ornithopod trackways, 16 theropod trackways and one sauropod trackway. The prevalence of ornithopod tracks and the limited occurrence of sauropod tracks at the Yeosu site evidently reflect decreased sauropod diversity in the Upper Cretaceous. All ornithopod trackways represent bipeds, and most of the ornithopod tracks are similar to Caririchnium from other sites of the Korean peninsula. All fossil wood specimens collected in the study area represent conifers (three species of cupressaceous and two species of taxodiaceous conifers, and a new species) except for one, which is a discotyledon. It is thus inferred that the southwestern part of the Korean Peninsula was primarily covered with mesic forests with taxodiaceous trees during the Late Cretaceous. The K–Ar age of the Yeosu tracksite is determined as 81–65 Ma (Camapnian to Maastrichtian). It indicates that the Yeosu track site contains the last records of dinosaurs living in Asia. Consequently, semi-arid palaeoclimatic conditions, together with a large lake as a persistent water source and rich vegetation of gymnosperm trees as food, resulted in the preservation of abundant dinosaur tracks in the Upper Cretaceous on the Korean Peninsula.