Microbial assemblages associated with sinking particles in the Porcupine Abyssal Plain (NE Atlantic Ocean)

Downward fluxes of microbial assemblages associated with sinking particles sampled in sediment traps deployed at nominal depths of 1000 m (trap A), 3000 m (trap B) and 4700 m (trap C) were measured between October 1995 and August 1998 on the Porcupine Abyssal Plain (PAP, NE Atlantic). The goal of the study was to provide detailed information on the microbial contributions to the particulate organic carbon and DNA fluxes. Bacterial fluxes associated with settling particles in the PAP area were generally low and significantly lower than bacterial fluxes reported from the same area during 1989–90. Marked seasonal pulses in the microbial assemblages were observed in all years that were associated with particle flux maxima in April–June. No significant differences were found in microbial fluxes between 1000 and 4700 m depth, but both the bacterial biomass flux and the frequency of dividing bacteria increased with depth, suggesting that organic matter turnover and conversion into bacterial biomass increased in the deeper traps. The structure of microbial assemblages displayed clear changes with increasing depth; the ratios of bacteria to both flagellates and cyanobacteria increased up to 4-fold between 1000 and 4700 m, showing a marked increase in bacterial dominance in the deeper layers of the water column. A parallel increase of the bacterial contribution to particulate organic carbon (POC) and DNA fluxes was observed. Total microbial contribution to the POC flux in the PAP area was about 2%, whereas the contribution of cyanobacteria was negligible. Fluxes of microbial assemblages were significantly correlated with DNA fluxes and on average the bacteria accounted for 5% of DNA fluxes. Data reported here confirm that the “rain” of particulate bacterial DNA may represent an important source of nucleotides for deep-sea bacteria, but also suggests that a much larger pool of detrital DNA is potentially available to deep-sea micro-organisms.     

Vertical Distribution of Meiobenthos in Bathyal Sediments of the Eastern Mediterranean Sea: Relationship with Labile Organic Matter and Bacterial Biomasses

Abstract. Quantitative information on the vertical distribution of meiofaunal abundances and biomass were obtained from samples collected at 3 bathyal stations in the Eastern Mediterranean Sea located at the same depth but characterized by different food supply. Vertical distribution patterns of nieiofauna were investigated in relation to the biochemical composition of the sediment organic matter (proteins, carbohydrates, and lipids) and compared to benthic bacterial standing stocks. No significant relationship between bacteria and meiofauna was found, whereas a significant relationship between protein and lipid concentrations and total meiofauna density was observed. These data suggest that labile organic matter. considered as material readily aVdihbk to benthic consumers, may be an important factor regulating meiofaunal abundance and vertical distribution in deep-sea sediments.     

A depocenter of organic matter at 7800 m depth in the SE Pacific Ocean

The Atacama trench, the deepest ecosystem of the southern Pacific Ocean (ca. 8000 m depth) was investigated during the Atacama Trench International Expedition. Sediments, collected at three bathyal stations (1040–1355 m depth) and at a hadal site (7800 m) were analyzed for organic matter quantity and biochemical composition (in terms of phytopigments, proteins, carbohydrates and lipids), bacterial abundance, biomass and carbon production and extracellular enzymatic activities. Functional chlorophyll-a (18.0±0.10 mg m⁻²), phytodetritus (322.2 mg m⁻²) and labile organic carbon (16.9±4.3 g C m⁻²) deposited on surface sediments at hadal depth (7800 m) reached concentrations similar to those encountered in highly productive shallow coastal areas. High values of bacterial C production and aminopeptidase activity were also measured (at in situ temperature and 1 atm). The chemical analyses of the Atacama hadal sediments indicate that this trench behaves as a deep oceanic trap for organic material. We hypothesize that, despite the extreme physical conditions, benthic microbial processes might be accelerated as a result of the organic enrichment.     

Response of BITS (a benthic index based on taxonomic sufficiency) to water and sedimentary variables and comparison with other indices in three Adriatic lagoons

The European Water Framework Directive (WFD, 2000/60/EC) recommends the development of biotic indices for assessing the ecological quality status of water bodies. The Benthic Index based on Taxonomic Sufficiency (BITS) was specifically developed for lagoonal systems, according to the tolerant/opportunistic approach. Macrobenthic data, variables indicative of eutrophication and variables indicative of sedimentary organic matter quality were collected during 18 surveys carried out between 2004 and 2005 in three Adriatic coastal lagoons (Venice Lagoon, Sacca di Goro, Lesina Lagoon). The relationship between environmental variables and biotic indices (AMBI, BENTIX, BITS, BOPA and FINE) was tested using multivariate analyses. Indices based on species classification level appeared to relate better with the variables describing organic matter quality, whereas BITS, which is based on family classification level, seemed related to eutrophication indicative variables, such as sulphide, ammonium, dissolved oxygen and orthophosphate concentrations. The BITS approach reduces the costs associated with sorting and identification of organisms. Providing a rapid assessment of ecological quality, and producing an ecologically relevant classification, BITS seems a promising tool for monitoring programs of Adriatic lagoonal ecosystems. Its sensitivity in reflecting the field conditions elsewhere, however, remains to be assessed.     

Metazoan meiofauna in deep-sea canyons and adjacent open slopes: A large-scale comparison with focus on the rare taxa

Metazoan meiofaunal abundance, total biomass, nematode size and the richness of taxa were investigated along bathymetric gradients (from the shelf break down to ca. 5000-m depth) in six submarine canyons and on five adjacent open slopes of three deep-sea regions. The investigated areas were distributed along >2500 km, on the Portuguese to the Catalan and South Adriatic margins. The Portuguese and Catalan margins displayed the highest abundances, biomass and richness of taxa, while the lowest values were observed in the Central Mediterranean Sea. The comparison between canyons and the nearby open slopes showed the lack of significant differences in terms of meiofaunal abundance and biomass at any sampling depth. In most canyons and on most slopes, meiofaunal variables did not display consistent bathymetric patterns. Conversely, we found that the different topographic features were apparently responsible for significant differences in the abundance and distribution of the rare meiofaunal taxa (i.e. taxa accounting for <1% of total meiofaunal abundance). Several taxa belonging to the temporary meiofauna, such as larvae/juveniles of Priapulida, Holothuroidea, Ascidiacea and Cnidaria, were encountered exclusively on open slopes, while others (including the Tanaidacea and Echinodea larvae) were found exclusively in canyons sediments. Results reported here indicate that, at large spatial scales, differences in deep-sea meiofaunal abundance and biomass are not only controlled by the available food sources, but also by the region or habitat specific topographic features, which apparently play a key role in the distribution of rare benthic taxa.     

Bioremediation of petroleum hydrocarbons in anoxic marine sediments: Consequences on the speciation of heavy metals

We investigated the effects of biostimulation and bioagumentation strategies applied to harbor sediments displaying reducing conditions and high concentrations of petroleum hydrocarbons and heavy metals. We compared the microbial efficiency of hydrocarbon removal from sediments maintained for 60 days in anoxic conditions and inoculated with acetate, sulfate-reducing bacterial strains and acetate and sulfate-reducing bacteria. All treatments determined a significant increase in the microbial growth and significant decreases of hydrocarbon contents and of redox potential values. The addition of sulfate-reducing bacterial strains to the sediment was the most efficient treatment for the hydrocarbon removal. In all experiments, significant changes of the heavy metals’ phase repartition were observed. The results reported here suggest that the biodegradation of petroleum hydrocarbons in anoxic marine sediments may be enhanced by stimulating microbial anaerobic metabolism, but care should be applied to monitor the potential changes in the mobility and bioavailability of heavy metals induced by bio-treatments.     

Bacterial response to seasonal changes in labile organic matter composition on the continental shelf and bathyal sediments of the Cretan Sea

Bacterial abundance, biomass and cell size were studied in the oligotrophic sediments of the Cretan Sea (Eastern Mediterranean), in order to investigate their response to the seasonal varying organic matter (OM) inputs. Sediment samples were collected on a seasonal basis along a transect of seven stations (ranging from 40 to 1570 m depth) using a multiple-corer. Bacterial parameters were related to changes in chloroplastic pigment equivalents (CPE), the biochemical composition (proteins, lipids, carbohydrates) of the sedimentary organic matter and the OM flux measured at a fixed station over the deep basin (1570 m depth). The sediments of the Cretan Sea represent a nutrient depleted ecosystem characterised by a poor quality organic matter. All sedimentary organic compounds were found to vary seasonally, and changes were more evident on the continental shelf than in deeper sediments. Bacterial abundance and biomass in the sediments of the Cretan Sea (ranging from 1.02 to 4.59 × 10⁸ cells g⁻¹ equivalent to 8.7 and 38.7 μgC g⁻¹) were quite high and their distribution appeared to be closely related to the input of fresh organic material. Bacterial abundance and biomass were sensitive to changes in nutrient availability, which also controls the average cell size and the frequency of dividing cells. Bacterial abundance increased up to 3-fold between August '94 and February '95 in response to the increased amount of sedimentary proteins and CPE, indicating that benthic bacteria were constrained more by changes in quality rather than the quantity of the sedimentary organic material. Bacterial responses to the food inputs were clearly detectable down to 10 cm depth. The distribution of labile organic compounds in the sediments appeared to influence the vertical patterns of bacterial abundance and biomass. Cell size decreased significantly with water depth. Bacterial abundance and biomass were characterised by clear seasonal changes in response to seasonal OM pulses. The strong coupling between protein flux and bacterial biomass together with the strong bacterial dominance over the total biomass suggest that the major part of the carbon flow was channelled through the bacteria and the benthic microbial loop.