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Richard Comblen Sébastien Blaise Vincent Legat Jean-François Remacle Eric Deleersnijder Jonathan Lambrechts 《Ocean Dynamics》2010,60(6):1395-1414
We describe the time discretization of a three-dimensional baroclinic finite element model for the hydrostatic Boussinesq
equations based upon a discontinuous Galerkin finite element method. On one hand, the time marching algorithm is based on
an efficient mode splitting. To ensure compatibility between the barotropic and baroclinic modes in the splitting algorithm,
we introduce Lagrange multipliers in the discrete formulation. On the other hand, the use of implicit–explicit Runge–Kutta
methods enables us to treat stiff linear operators implicitly, while the rest of the nonlinear dynamics is treated explicitly.
By way of illustration, the time evolution of the flow over a tall isolated seamount on the sphere is simulated. The seamount
height is 90% of the mean sea depth. Vortex shedding and Taylor caps are observed. The simulation compares well with results
published by other authors. 相似文献
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Sébastien Blaise Benjamin de Brye Anouk de Brauwere Eric Deleersnijder Eric J. M. Delhez Richard Comblen 《Ocean Dynamics》2010,60(3):535-554
At high Peclet number, the residence time exhibits a boundary layer adjacent to incoming open boundaries. In a Eulerian model,
not resolving this boundary layer can generate spurious oscillations that can propagate into the area of interest. However,
resolving this boundary layer would require an unacceptably high spatial resolution. Therefore, alternative methods are needed
in which no grid refinement is required to capture the key aspects of the physics of the residence time boundary layer. An
extended finite element method representation and a boundary layer parameterisation are presented and tested herein. It is
also explained how to preserve local consistency in reversed time simulations so as to avoid the generation of spurious residence
time extrema. Finally, the boundary layer parameterisation is applied to the computation of the residence time in the Scheldt
Estuary (Belgium/The Netherlands). This timescale is simulated by means of a depth-integrated, finite element, unstructured
mesh model, with a high space–time resolution. It is seen that the residence time temporal variations are mainly affected
by the semi-diurnal tides. However, the spring–neap variability also impacts the residence time, particularly in the sandbank
and shallow areas. Seasonal variability is also observed, which is induced by the fluctuations over the year of the upstream
flows. In general, the residence time is an increasing function of the distance to the mouth of the estuary. However, smaller-scale
fluctuations are also present: they are caused by local bathymetric features and their impact on the hydrodynamics. 相似文献
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Olivier Maury Yunne-Jai Shin Blaise Faugeras Tamara Ben Ari Francis Marsac 《Progress in Oceanography》2007,74(4):500-514
Numerical simulations using a physiologically-based model of marine ecosystem size spectrum are conducted to study the influence of primary production and temperature on energy flux through marine ecosystems. In stable environmental conditions, the model converges toward a stationary linear log–log size-spectrum. In very productive ecosystems, the model predicts that small size classes are depleted by predation, leading to a curved size-spectrum.It is shown that the absolute level of primary production does not affect the slope of the stationary size-spectrum but has a nonlinear effect on its intercept and hence on the total biomass of consumer organisms (the carrying capacity). Three domains are distinguished: at low primary production, total biomass is independent from production changes because loss processes dominate dissipative processes (biological work); at high production, ecosystem biomass is proportional to primary production because dissipation dominates losses; an intermediate transition domain characterizes mid-production ecosystems. Our results enlighten the paradox of the very high ecosystem biomass/primary production ratios which are observed in poor oceanic regions. Thus, maximal dissipation (least action and low ecosystem biomass/primary production ratios) is reached at high primary production levels when the ecosystem is efficient in transferring energy from small sizes to large sizes. Conversely, least dissipation (most action and high ecosystem biomass/primary production ratios) characterizes the simulated ecosystem at low primary production levels when it is not efficient in dissipating energy.Increasing temperature causes enhanced predation mortality and decreases the intercept of the stationary size spectrum, i.e., the total ecosystem biomass. Total biomass varies as the inverse of the Arrhenius coefficient in the loss domain. This approximation is no longer true in the dissipation domain where nonlinear dissipation processes dominate over linear loss processes. Our results suggest that in a global warming context, at constant primary production, a 2–4 °C warming would lead to a 20–43% decrease of ecosystem biomass in oligotrophic regions and to a 15–32% decrease of biomass in eutrophic regions.Oscillations of primary production or temperature induce waves which propagate along the size-spectrum and which amplify until a “resonant range” which depends on the period of the environmental oscillations. Small organisms oscillate in phase with producers and are bottom-up controlled by primary production oscillations. In the “resonant range”, prey and predators oscillate out of phase with alternating periods of top-down and bottom-up controls. Large organisms are not influenced by bottom-up effects of high frequency phytoplankton variability or by oscillations of temperature. 相似文献
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Vitellins (Vn) are the major egg yolk proteins that constitute an important energy reserve for mollusc embryos. The purpose of the present study was to examine whether the relative levels of sugars, lipids, phosphates, and labile IIb metals and calcium normally associated with Vn would differ in clam populations living at contaminated sites. Softshell clams (Mya arenaria) were collected at three sites in the area of the Saguenay Fjord: a marina, a municipal sewer outfall zone, and a reference site. The condition factor (weight:length ratio), metallothionein-like proteins, cytochrome P450 1A1 activity and DNA damage were all determined in the clam's digestive gland. Levels of total sugars, lipids, alkali-labile phosphates, proteins, and labile zinc and calcium were determined in female gonad homogenates and in purified Vn. The results show that clam gonads at the contaminated site by a marina displayed a lower index of gonad activity than the reference site. In addition, the condition factor was significantly lower at the marina site as compared to the reference site, with a concomitant increase in DNA damage and metallothionein (MT) induction. In fact, the condition factor was significantly correlated with DNA damage (R = -0.413, P = 0.045) and MT levels (R = -0.622, P = 0.03). Homogenates of female gonads were found to contain higher levels of labile IIb metals and calcium, with lower lipid content at the marina site compared to the reference site, and much higher levels of alkali-labile phosphates (ALP) and calcium at the municipal outfall site. Vn from the marina site were significantly higher in labile IIb metals but lipid content appeared to be somewhat lower than at the reference site. Vn from the municipal site were found to be highly phosphorylated, with higher levels of lipids and calcium. These results suggest that the chemical composition of the gonads and Vn are altered in contaminated sites. 相似文献
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Jean-Claude Hippolyte Gilles Brocard Marc Tardy Grard Nicoud Didier Bourls Rgis Braucher Gilles Mnard Blaise Souffach 《Tectonophysics》2006,418(3-4):255-276
In the Western Alps, some recent scarps were previously interpreted as surface ruptures of tectonic reverse and normal faults that agree with microseismicity and GPS measurements. Our analysis shows that in fact there are hundreds of recent scarps, up to 30 m high and 2.1 km long, with only pure normal motions. They share the same characteristics as typical sackung scarps. The scarps are mainly uphill facing, parallel to the ridge crests and the contour lines. They are relatively short (less than 2.1 km) with respect to tectonic fault ruptures, and organized in swarms. They cut screes and relict rock glaciers with a slow (commonly 1 mm/year) average slip rate. In the Aiguilles Grives massif these sackung scarps clearly express the gravitational toppling of sub-vertical bedding planes in hard rocks. In contrast, the Belledonne Outer Crystalline Massif exhibits scarps that stem from the gravitational reactivation of conjugate tectonic faults. The recent faults extend to about 1600 m beneath the Rognier ridge crest, but are always above the valley floor. The main scarp swarm is 9.2 km long and constitutes the largest sackung ever described in the Western Alps. 10Be dating of a scarp and offset surfaces shows that > 4 m slip may have occurred rapidly (in less than 3800 years) sometimes between the end of the glaciation and 8800 ± 1900 years ago. This dating, together with the location of some faults far from the deep glacial valleys, suggests that sagging might have been triggered by strong earthquakes during a post-glacial period of probably enhanced seismicity. The Belledonne and Synclinal Median faults (just beneath the Rognier sackung) could have been the sources of this seismicity. 相似文献
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Earl E. Davis Wayne D. Goodfellow Brian D. Bornhold John Adshead Bertrand Blaise Heiner Villinger Gina M. Le Cheminant 《Earth and Planetary Science Letters》1987,82(1-2)
A number of mounds each several hundred meters across and up to sixty meters high have been observed with SeaMARC II acoustic imagery and Seabeam bathymetry in the sediment-filled axial valley at the northern end of the Juan de Fuca Ridge. The mounds are located a few kilometers west of the eastern valley-bounding normal fault scarp where the local sediment fill is approximately 300 m thick. All of the mounds are believed to be of hydrothermal origin, and one is associated with anomalously high heat flow in excess of 1 W m−2. A piston core collected from that mound comprises coarse clastic sulfide units interbedded with sulfidic muds. Hydrothermal minerals present in the 2.3 m section include pyrrhotite, pyrite, marcasite, sphalerite, chalcopyrite, iss (intermediate solid solution in the CuFeZnS system), chalcopyrrhotite, galena, talc, barite, and amorphous silica. Mineral fabrics of the clasts indicate that the material was precipitated at or near the sea floor by mixing of hot hydrothermal fluids with cold seawater. Low concentrations of Zn, Cu, Cd, and Ag relative to those found in unsedimented ridge hydrothermal deposits, and the presence of pyrrhotite as an early phase mineral indicates that the vent fluids have been modified by reaction with sediments beneath the mound. Rapid sedimentation in a rift valley is clearly conducive to the formation of large hydrothermal mineral deposits like those believed to be present within and beneath these mounds. The relatively impermeable sediment cover insulates the crust, inhibits groundwater recharge, promotes long-lived discharge at a restricted number of sites, provides a substrate for the efficient subsurface precipitation of minerals, and through continued sedimentation, protects surficial deposits from the corrosive effects of seawater. No reliable estimate of the bulk composition of the mounds can be made with existing data, but their size is comparable to major hydrothermal mineral deposits found on land; ancient settings in which many land deposits formed are in many ways similar to the one in which the features described here are currently forming. 相似文献
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A method of kinematic analysis of structures, microstructuresand mineral preferred orientations, initially devised in the study of peridotites, has been applied to crustal rocks bearing evidence of large strains produced in metamorphic environments. Three tectonic lineaments (Angers-Lanvaux, Montagne Noire and Maydan) were selected. They illustrate a general situation arising in continental crusts when they are deformed by ductile transcurrent fault systems.The Angers-Lanvaux structure is bilaterally symmetric; its dominant feature is the horizontal stretching lineation which is parallel to the fold axes. The foliation and slaty cleavage in the most surficial formations wrap around the axis of the whole structure. The folds in the slates away from the axis also exhibit axes parallel to the general trend, but no stretching lineations. These folds are attributed to crustal shortening in a direction normal to the ductile fault. In the Montagne Noire recumbent folds are thrusted away from the axis of the structure over at least 25 km. The metamorphism is also centered on the structure and symmetrically reduced away from it. The core of the structure is occupied by a strongly lineated orthogneiss, cut by a late intrusive granite. The Maydan axial zone displays clear evidence of partial melting at various scales within the deformed gneisses: (1) in gashes perpendicular to the stretching lineation which in these anatectic formations tends to plunge at more than 45°; (2) in bands of deformed pegmatites; and (3) possibly in granites which on the one hand intrude the surrounding formations and on the other converge with increasing deformation on the fault zone. The quartz preferred orientations and microstructures in quartzite layers from Angers indicate that the plastic flow plane and direction lie, respectively, close to the foliation and lineation, the slight departure is ascribed to a flow with a rotational shear component.All this suggests a general model for the origin of such ductile zones. The horizontal relative displacement of crustal blocks along a ductile band is responsible for its overall steeply dipping foliation and horizontal lineations. Viscous heating progressively tends to concentrate the plastic flow along its axis. It is also responsible for the development of metamorphism and of anatexis at depth; the partially melted rocks tend to rise, building at shallower depth the arched structure in the axis of the ductile zone, with a continuing flowage parallel to this axis probably now in the solid state; they can also intrude the surrounding terrain as undeformed batholiths. The folds parallel to the stretching lineation in the axial zone are explained by the fact that, due to the escape of anatectic melts, the formations at depth flow in a narrowing channel. The upwelling of the axial structure induces a compression with folding in the surrounding sedimentary formations and gravity nappe sliding away from the axis. 相似文献
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A biomarker study was undertaken using the Calico scallop Argopecten gibbus to assess the ecotoxicological effects of a semi-submerged municipal dump on the adjacent patch reef lagoon ecosystem (Castle harbour, Bermuda). Caged scallops were deployed in situ for 2 months at various distances from the dump (50 m, 900 m and 2.7 km) and at a reference site (14 km). A suite of biomarkers comprising metallothionein (MT), lipid peroxidation (LPO), vitellin-like proteins (Vn), glutathione S-transferase (GST), DNA strand breaks and condition factor (CF) were investigated in various tissues of the scallop (gill, digestive gland and gonad). Levels of heavy metals were also measured in the whole scallop soft tissue. While there was some variation in response between tissues, in general the results indicated that the dump was negatively impacting scallops deployed in the adjacent marine environment: elevated levels of MT, DNA strand breaks, Vn and GST and reduced condition factor were found for scallops deployed nearest to the dump and at the site 1.5 km from this point source of contamination (Tuckers town) in Castle harbour, with respect to the reference site, North Rock (although this exhibited some degree of metal contamination). The gills from scallops deployed at the dump site were the most responsive tissue, with the highest expression of MT, LPO and DNA damage. This study indicates the potential of the Calico scallop as a convenient bioindicator species in the marine tropical benthos. 相似文献
10.
Neuroendocrine disruption in Mya arenaria clams during gametogenesis at sites under pollution stress 总被引:1,自引:0,他引:1
This study examined the neuroendocrine status of clams on intertidal mud flats in the St. Lawrence Estuary and Saguenay Fjord areas during late gametogenesis. The impact of pollution was determined by a test battery of early stress markers (metallothioneins, heme levels, glutathione S-transferase activity), tissue damage (lipid peroxidation and DNA damage) and morphologic characteristics (age, soft-tissue weight ratio and growth index). Neuroendocrinal status was examined by tracking serotonin and dopamine metabolism, monoamine adenylate cyclase activity in synaptosomes, monoamine oxidase and arachidonate cyclooxygenase activities in relation to gametogenetic activity: pyrimidine synthesis, (aspartate transcarbamoylase activity or ATC), vitellogenin-like proteins and gonado-somatic index. The results show that clam soft tissue weights were reduced at sites close to harbours and higher at sites near domestic wastewater outfalls. The age-to-length ratio of clams was generally higher at impacted sites, suggesting reduced growth. The biomarkers of stress or damage confirmed that oxidative stress, DNA damage, metallothioneins and glutathione S-transferase activity were significantly increased at varying degrees, at the polluted sites. Vitellogenin-like proteins and gametogenetic activity were significantly increased at sites influenced by domestic wastewaters. Furthermore, the clams were still in active gametogenesis and not ready for spawning, as indicated by the concordance of the serotonin/dopamine ratio with vitellogenin-like proteins and pyrimidine synthesis. However, gonadal cyclooxygenase activity was increased at polluted sites and significantly correlated with most of the stress biomarkers, suggesting that the clams were in a state of inflammation rather than at the spawning stage. Finally, a multivariate analysis revealed that the sites were readily discriminated with high efficiency (>71%) and that both neuroendocrine physiological markers and stress responses were identified as the major components, thus explaining the global physiological response of the clams. We conclude that the effects of pollution compromise the clams' health status and that the initiation of gametogenesis in environments contaminated by municipal wastewaters or harbours contributes to the toxic effects of pollution. 相似文献