Stable carbon-isotopic compositions of lipids isolated from the ammonia-oxidizing chemoautotroph Nitrosomonas europaea

For the ammonia-oxidizing bacterium Nitrosomonas europaea, grown autotrophically using semicontinuous culturing, average biomass was depleted in ¹³C relative to CO₂ dissolved in the medium by ca. 20‰ and the total-lipid extract was depleted in ¹³C relative to biomass by 3.7‰. The n-alkyl lipids (weighted average of fatty acids) and isoprenoid lipids (weighted average of hopanoids) were both depleted in ¹³C relative to biomass by about 9‰. The large depletion in the isoprenoid lipids seems to indicate that isotopic fractionations associated with the biosynthesis of methylerythritol phosphate (MEP) affected at least two carbon positions in each isoprene unit. Among the fatty acids, trans-9-hexadecenoic acid was most depleted (13.0‰ relative to biomass), followed by cis-9- hexadecenoic acid (9.6‰) and hexadecanoic acid (6.9‰). Isotopic relationships between the three acids suggest that significant isotope effects were associated with the desaturation and cis to trans isomerization of fatty acids. Given these observations, hopanoids produced by ammonia-oxidizing bacteria growing in natural waters are likely to be depleted in ¹³C by 26–30‰ relative to dissolved CO₂. Since CO₂ at aquatic oxyclines is often depleted in ¹³C, the range of δ values expected for hopanoids is ca. −34‰ to −55‰. The δ values of geohopanoids observed in numerous studies and attributed to unspecified chemoautotrophs fall within this range.     

Polar and neutral isopranyl glycerol ether lipids as biomarkers of archaea in near-surface sediments from the Nankai Trough

The molecular and carbon isotopic compositions of polar isopranyl glycerol ether lipids, which are direct indicators of viable archaea, and neutral isopranyl glycerol ether lipids, which are derived from polar lipids via hydrolysis, in near-surface sediments from a methane seep in the Nankai Trough (off central Japan) were investigated. Procedures for extracting, separating and derivatizing polar and neutral ether lipids for detection using gas chromatography were first examined with one sediment sample and a cultivated methanogen. For all sediment samples, archaeol and hydroxyarchaeol were detected in both the polar and neutral ether lipid fractions. Acyclic and cyclic biphytanes were also detected in both types of lipid fractions after treatment with HI/LiAlH₄ for ether cleavage and alkylation. The δ¹³C values of archaeol, sn-2-hydroxyarchaeol, and sn-3-hydroxyarchaeol in the sample from 0.82 m below the seafloor were lower than −100‰ relative to PDB, indicating that diverse living methanotrophic archaea are present in the seep sediments. Biphytanes released from polar ether lipids in the same sample were less depleted in δ¹³C (−71‰ to −36‰). The wide range of δ¹³C values suggests that the biphytanes were derived not only from methanotrophic but also from non-methanotrophic archaea, and that the relative contributions of the methanotrophic and non-methanotrophic archaea differed, depending on the biphytane compound. The vertical profiles and δ¹³C values of the neutral ether lipids were similar to those of the intact polar ether lipids, suggesting that neutral ether lipids derived from fossil archaea in the samples had mainly been lost by the time of sampling.     

High-reliability zircon separation for hunting the oldest material on Earth: An automatic zircon separator with image-processing/microtweezers-manipulating system and double-step dating

Despite the recent development in radiometric dating of numerous zircons by LA-ICPMS, mineral separation still remains a major obstacle, particularly in the search for the oldest material on Earth. To improve the efficiency in zircon separation by an order of magnitude, we have designed/developed a new machine-an automatic zircon separator(AZS). This is designed particularly for automatic pick-up of100 μm-sized zircon grains out of a heavy mineral fraction after conventional separation procedures. The AZS operates in three modes:(1) image processing to choose targeted individual zircon grains out of all heavy minerals spread on a tray,(2) automatic capturing of the individual zircon grains with microtweezers, and(3) placing them one-by-one in a coordinated alignment on a receiving tray. The automatic capturing was designed/created for continuous mineral selecting without human presence for many hours. This software also enables the registration of each separated zircon grain for dating, by recording digital photo-image, optical(color) indices, and coordinates on a receiving tray. We developed two new approaches for the dating; i.e.(1) direct dating of zircons selected by LA-ICPMS without conventional resin-mounting/polishing,(2) high speed U-Pb dating, combined with conventional sample preparation procedures using the new equipment with multiple-ion counting detectors(LA-MIC-ICPMS).With the first approach, Pb-Pb ages obtained from the surface of a mineral were crosschecked with the interior of the same grain after resin-mounting/polishing. With the second approach, the amount of time required for dating one zircon grain is ca. 20 s, and a sample throughput of 150 grains per hour can be achieved with sufficient precision(ca. 0.5%).We tested the practical efficiency of the AZS, by analyzing an Archean Jack Hills conglomerate in Western Australia with the known oldest(4.3 Ga) zircon on Earth. Preliminary results are positive; we were able to obtain more than 194 zircons that are over 4.0 Ga out of ca. 3800 checked grains, and 9 grains were over 4300 Ma with the oldest at 4371 ± 7 Ma. This separation system by AZS, combined with the new approaches, guarantees much higher yield in the hunt for old zircons.     

Current Nature of the Kuroshio in the Vicinity of the Kii Peninsula

The Kuroshio flows very close to Cape Shionomisaki when it takes a straight path. The detailed observations of the Kuroshio were made both on board the R/V Seisui-maru of Mie University and on board the R/V Wakayama of the Wakayama Prefectural Fisheries Experimental Station on June 11–14, 1996. It was confirmed that the current zone of the Kuroshio touches the coast and bottom slope just off Cape Shionomiaki, and that the coastal water to the east of the cape was completely separated from that to the west. The relatively high sea level difference between Kushimoto and Uragami could be caused by this separation of the coastal waters when the Kuroshio takes a straight path. This flow is rather curious, as the geostrophic flow, which has a barotropic nature and touches the bottom, would be constrained to follow bottom contours due to the vorticity conservation law. The reason why the Kuroshio leaves the bottom slope to the east of Cape Shionomisaki is attributed to the high curvature of the bottom contours there: if the current were to follow the contours, the centrifugal term in the equation of motion would become large and comparablee to the Coriolis (or pressure gradient) term, and the geostrophic balance would be destroyed. This creates a current-shadow zone just to the east of the cape. As the reason why the current zone of the Kuroshio intrudes into the coastal region to the west of the cape, it is suggested that the Kii Bifurcation Current off the southwest coast of the Kii Peninsula, which is usually found when the Kuroshio takes the straight path, has the effect of drawing the Kuroshio water into the coastal region. The sea level difference between Kushimoto and Uragami is often used to monitor the flow pattern of the Kuroshio near the Kii Peninsula. It should be noted that Uragami is located in the current shadow zone, while Kushimoto lies in the region where the offshore Kuroshio water intrudes into the coastal region. The resulting large sea level difference indicates that the Kuroshio is flowing along the straight path.     

Petrography of Late Cambrian to Middle Ordovician radiolarian chert in Kazakhstan with special reference to the emergence of benthic animals in the pelagic realm

Upper Cambrian to Middle Ordovician radiolarian chert successions from Kazakhstan were studied to clarify the history of the emergence of benthic animals in ocean floor sediments. Radiolarian tests and clay were deposited for a period of 30 Myr without experiencing an influx of continent-derived coarse clastic materials. Red, grey and black cherts of the Upper Cambrian to the upper mid-Darriwilian are thinly laminated, and no trace of benthic animal activity is recognized in that time interval. Bioturbation structures and burrow traces in mid-Darriwilian stage red chert in Kazakhstan suggest that benthic animals colonized the location where radiolarian chert formed, but that there was a significant delay in colonization when compared with similar reported occurrences in Australia and Canada.     

Bidirectional shaking table tests of a low-cost friction sliding system with flat-inclined surfaces

A novel low-cost friction sliding system for bidirectional excitation is developed to improve the seismic performance of reinforced concrete (RC) bridge piers. The sliding system is a spherical prototype developed by combining a central flat surface with an inclined spherical segment, characterized by stable oscillation and a large reduction in response accelerations on the flat surface. The inclined part provides a restoring force that limits the residual displacements of the system. Conventional steel and concrete are employed to construct a flat-inclined spherical surface atop an RC pier. The seismic forces are dissipated through the frictions generated during the sliding movements; hence, the seismic resilience of bridges can be ensured with a low-cost design solution. The proposed system is fabricated utilizing a mold created by a three-dimensional printer, which facilitates the use of conventional concrete to construct spherical shapes. The concrete surface is lubricated with a resin material to prevent abrasion from multiple input ground motions. To demonstrate the effectiveness of the system, bidirectional shaking table tests are conducted in the longitudinal and transverse directions of a scaled bridge model. The effect of the inclination angle and the flat surface size is investigated. The results demonstrate a large decrease in response acceleration when the system exhibits circular sliding displacement. Furthermore, the inclination angle that generates the smallest residual displacement is identified experimentally.     

Internal differentiation of Kutsugata lava flow from Rishiri Volcano,Japan: Processes and timescales of segregation structures' formation

Internal differentiation processes in a solidifying lava flow were investigated for the Kutsugata lava flow from Rishiri Volcano in northern Japan. In a representative 6-m thick lava flow that was investigated in detail in this study, segregation products darker than the host lavas manifested mainly in the form of pipes (vesicle cylinders) and layers (vesicle sheets), occurring around 0.5–2.3 m and 2.0–4.0 m above the base, respectively. Both the cylinders and sheets are significantly richer in incompatible elements such as TiO₂ and K₂O than the host lavas, which suggest that these products essentially represent residual melt produced during solidification of the lava flow. Field observation and the geochemical features of the lavas suggest that the vesicle cylinders grew upward from near the base of the flow by continuous feeding of residual melt from the neighboring host lavas to the heads of the cylinders. On the other hand, the vesicle sheets were produced in situ in the solidifying lava flow as fracture veins caused by horizontal compression. The vesicle cylinders have a remarkably higher MgO content (up to 8 wt.%) than the host lava (< 6 wt.%), whereas the vesicle sheets display MgO depletion (as low as 3.5 wt.%). The relatively high MgO content of the vesicle cylinders cannot be explained solely by the mechanical mixing of olivine phenocrysts with the residual melt. It is suggested that the vesicle cylinders were produced by the extraction of olivine-bearing interstitial melt from an augite-plagioclase network in the host lava, whereas the vesicle sheets were formed by the migration of the residual melt from a crystal network consisting of plagioclase, augite, and olivine in the host lava into platy fractures. We infer that this selective crystal fractionation for forming the vesicle cylinders resulted from processes in which abundant vesicles rejected from the upward-migrating floor solidification front prevented olivine crystals from being incorporated into the crystal network in the host lava. The vesicle cylinders are considered to have formed in ∼ 1 day after the lava flow came to rest, while relatively large vesicle sheets (> 1 cm thick) appeared much later (after ∼ 9 days). The formation of these segregation products was essentially complete within 20 days after the lava emplacement.     

Raman spectra of methane hydrate up to 86 GPa

High-pressure Raman studies of methane hydrate were performed using a diamond anvil cell in the pressure range of 0.1–86 GPa at room temperature. Raman spectra of the methane molecules revealed that new softened intramolecular vibration mode of ν ₁ appeared at 17 GPa and that the splitting of vibration mode of ν ₃ occurred at 15 GPa. The appearance of these two modes indicates that an intermolecular attractive interaction increases between the methane molecules and the host water molecules and between the neighboring methane molecules. These interactions might result in the exceptional stability of a high-pressure structure, a filled ice Ih structure (FIIhS) for methane hydrate, up to 40 GPa. At 40 GPa, a clear change in the slope of the Raman shift versus pressure occurred, and above 40 GPa the Raman shift of the vibration modes increased monotonously up to 86 GPa. A previous XRD study showed that the FIIhS transformed into another new high-pressure structure at 40 GPa. The change in the Raman spectra at 40 GPa may be induced by the transition of the structure.