Measuring species richness on sandy beach transects: extrapolative estimators and their implications for sampling effort

Species richness is a measure that is fundamental to many studies in ecology, and it is particularly important on sandy beaches, where it underlies patterns described by the broadly accepted swash exclusion hypothesis. However, its estimation in practice is problematic. This has led ecologists in other fields to adopt extrapolative estimators of species richness, which project the total number of species present in a habitat by adjusting upward the number of species observed by an amount related to the number of rare species encountered in the samples. In so doing, the species richness can be estimated, with confidence intervals, at any level of sampling effort. Despite the availability and advantages of these methods, beach ecologists have continued to use the observed species richness as a point estimate of biodiversity for beaches. Here, we employ a Monte Carlo resampling approach over a range of routine transect designs used to sample sandy beaches, and evaluate the performance of seven non-parametric extrapolative estimators for species richness relative to that of the more conventionally used observed species richness. We find that the first-order Jackknife estimator (Jack 1) is the least biased, most accurate and most consistent across sites. Employing this estimator would allow accurate estimation of species richness on short (tens of metres) stretches of beach without exceeding the acceptable levels of sampling effort (4–5 m²). Spreading this effort evenly over three across-shore transects, each with a minimum of 13 equally spaced levels seems appropriately efficient. Although a greater number of research studies is required to ascertain the generality of these results beyond the beaches we sampled, we tentatively recommend the application of our results in biodiversity surveys on sandy beaches.     

Amorphous copper and zinc sulfides in the metalliferous sediments of the Red Sea

Detailed studies on the copper and zinc distribution in metalliferous sediments from the Atlantis II Deep (Red Sea) demonstrate that beside chalcopyrite and sphalerite appreciable amounts of copper and zinc are found in X-ray amorphous copper and zinc sulfides not previously described. Only low contents of copper and zinc are present in nontronites, hydroxides and carbonates.     

Dispersion of a Passive Scalar Within and Above an Urban Street Network

The transport of a passive scalar from a continuous point-source release in an urban street network is studied using direct numerical simulation (DNS). Dispersion through the network is characterized by evaluating horizontal fluxes of scalar within and above the urban canopy and vertical exchange fluxes through the canopy top. The relative magnitude and balance of these fluxes are used to distinguish three different regions relative to the source location: a near-field region, a transition region and a far-field region. The partitioning of each of these fluxes into mean and turbulent parts is computed. It is shown that within the canopy the horizontal turbulent flux in the street network is small, whereas above the canopy it comprises a significant fraction of the total flux. Vertical fluxes through the canopy top are predominantly turbulent. The mean and turbulent fluxes are respectively parametrized in terms of an advection velocity and a detrainment velocity and the parametrization incorporated into a simple box-network model. The model treats the coupled dispersion problem within and above the street network in a unified way and predictions of mean concentrations compare well with the DNS data. This demonstrates the usefulness of the box-network approach for process studies and interpretation of results from more detailed numerical simulations.     

Carbon,nitrogen, and water stable isotopes in plant tissue and soils across a moisture gradient in Puerto Rico

Stable isotopes in the water molecule (²H or D and ¹⁸O), carbon, and nitrogen are useful tracers and integrators of processes in plant ecohydrological systems across scales. Over the last few years, there has been growing interest in regional to continental scale synthesis of stable isotope data with a view to elucidating biogeochemical and ecohydrological patterns. Published datasets from the humid tropics, however, are limited. To be able to contribute to bridging the “data gap” in the humid tropics, here, we publish a relatively novel and unique suite of δ¹³C, δ¹⁵N, δ²H, and δ¹⁸O isotope data from three sites across a moisture gradient and contrasting land use in Puerto Rico. Plant tissue (xylem and leaf) samples from two species of mahogany (Swietenia macrophylla and Swietenia mahagoni) and soil samples down to 60 cm in the soil profile were collected in relatively “wet” (July 2012) and “dry” (February 2013) periods at two sites in northeastern (Luquillo) and southwestern (Susua) Puerto Rico. The same sampling suite is also being made available from a highly urbanized site in the capital San Juan. Leaf samples taken in July 2012 and February 2013 were analyzed for δ¹³C and δ¹⁵N; all xylem and bulk soil samples were analyzed for δ²H and δ¹⁸O. Soil samples taken in July 2012 were analyzed for δ¹³C and δ¹⁵N. Leaf δ¹⁵N and δ¹³C dataset showed patterns that are possibly associated with site differences. While spatial patterns were also apparent in soil δ¹⁵N and δ¹³C dataset, the positively linear δ¹⁵N –δ¹³C relationship tends to weaken with site moisture. Soil depth and site moisture patterns were also observed in the δ²H and δ¹⁸O datasets of bulk soil and xylem samples. The purpose of these datasets is to provide baseline information on soil–plant water (δ²H and δ¹⁸O, N = 319), δ¹³C (N = 272), and δ¹⁵N (N = 269) that may be useful in a wide range of research questions from ecohydrological relations to biogeochemical patterns in soils and vegetation.     

Tritium analysis shows apple trees may be transpiring water several decades old

Recent work has shown evidence of ecohydrological separation whereby plants appear to use a less mobile soil water pool that does not mix with more mobile soil water, groundwater, and streamflow. Although many elements of this two water worlds hypothesis remain to be tested and challenged, one key question is “how old might the less mobile water used by plants be?” Such a question is methodologically difficult to answer: stable isotope tracing makes it difficult to resolve any water age older than a few years since the signal gets so damped. Tritium—a useful radiogenic isotope and age dating tool, is now difficult to use in natural systems because most bomb tritium has washed out of soil profiles. Here, we leverage new data from an unusually deep, homogenous soil profile that preserves the mid‐1960s tritium bomb signal. We sample the Fuji apple trees (Malus pumila Mil) growing on this site that have root systems that penetrate over 15 m and utilize water from within the bomb peak soil water distribution (extracted via cryogenic extraction). Our data show that water used by these trees is on average 29 years old. Bayesian mixing analysis suggests that 40 ± 30% of fruit tissue water came from depths between 4 and 9 m within the soil profile (36 ± 9 years old); 60 ± 29% was equally divided between 0 and 4 m and 9–15 m ranges (13 ± 5 years old). These findings suggest that trees can use quite old less mobile water, highlighting the separation in ages between more mobile soil water and water in transit in sap flow .     

Multiple Iron-Rich Spinel Phases and Hematite in a Magnetic Soil Developing on Tuffite

A dusky red Latosol developing on tuffite was examined in detail in order to characterize its iron oxide mineralogy. Magnetic separation and selective chemical treatment were employed. The mineralogical analyses were carried out by powder X-ray diffraction and Mössbauer spectroscopy, with the electron microprobe technique being used to assess the chemical composition of selected grains. Results reveal that iron-rich spinel-structure phases from this pedosystem are rather variable in chemical composition and lattice parameters, and can be grouped in at least three major populations: the first group consisting of the iron-richest phase, with very low Ti and Cr and virtually no Mg content and high Al; the second group presenting Ti>Mg>>Al>Mn contents but no Cr and the third group related to the Mg-richest phase with Mg>Ti>>Al>Mn. Two major populations of hematite were also identified: one with ～15 mol% Al and other practically Al-free. The first group is thought to be a product of neoformation in an Al-rich pedogenic medium whereas the second is likely to be transformed directly from maghemite. Though chemical treatment along with physical techniques provide a powerful way to characterize iron oxides of tropical soils, some methodological difficulties still remain, particularly those concerned with (i) the characterization and quantification of maghemite in presence of relatively large amount of hematite in the soil mixture, particularly by Mössbauer spectroscopy, and (ii) the allocation of the isomorphous substituents for iron in the cation sites of the spinel structure. Possible mechanisms of alteration of iron-rich phases in this pedosystem are discussed.     

Modelling Fractal Turbulent Velocity Spectra: Application to a Dispersion Model of Contaminants in Particular Cases of the Planetary Boundary Layer

Boundary-Layer Meteorology - The present work develops a model for the turbulent velocity spectra that considers the anomalous behaviour of the turbulent flow. The $$\beta $$ -model assumes that...     

An Analysis of Sonic Anemometer Observations In Low Wind Speed Conditions

When the wind speed decreases below a certain value (1–2 m s^-1) meandering (low frequency horizontal wind oscillations) starts to prevail. In these conditions it becomes difficult to define a precise mean wind direction and to estimate the airborne dispersion. To study the wind and turbulence characteristics during meandering, two sonic anemometer datasets, containing hourly wind observations, were analysed: the first one, lasting 1 year, was recorded in complex terrain (Graz, Austria) and the second one, lasting about 1month, was recorded in a rather flat area (Tisby, Sweden). It was found that meandering seems to exist under all meteorological conditions regardless of the stability or wind speed and it was confirmed that meandering sets a lower limit for the horizontal wind component variances. Further, it was found that the autocorrelation functions of the horizontal wind components, computed for the low wind cases, show an oscillating behaviour with the presence of large negative lobes. Two different relationships from the literature, and relevant to these oscillatory aspects, were fitted to the data. They contain two parameters: one associated and relevant to the classical integral time scale and the second with meandering occurrence. Based on these relationships, expressions for the mean square displacement of particles _y²(t) were also derived.     

Insights into plant water uptake from xylem‐water isotope measurements in two tropical catchments with contrasting moisture conditions

Water transpired by trees has long been assumed to be sourced from the same subsurface water stocks that contribute to groundwater recharge and streamflow. However, recent investigations using dual water stable isotopes have shown an apparent ecohydrological separation between tree‐transpired water and stream water. Here we present evidence for such ecohydrological separation in two tropical environments in Puerto Rico where precipitation seasonality is relatively low and where precipitation is positively correlated with primary productivity. We determined the stable isotope signature of xylem water of 30 mahogany (Swietenia spp.) trees sampled during two periods with contrasting moisture status. Our results suggest that the separation between transpiration water and groundwater recharge/streamflow water might be related less to the temporal phasing of hydrologic inputs and primary productivity, and more to the fundamental processes that drive evaporative isotopic enrichment of residual soil water within the soil matrix. The lack of an evaporative signature of both groundwater and streams in the study area suggests that these water balance components have a water source that is transported quickly to deeper subsurface storage compared to waters that trees use. A Bayesian mixing model used to partition source water proportions of xylem water showed that groundwater contribution was greater for valley‐bottom, riparian trees than for ridge‐top trees. Groundwater contribution was also greater at the xeric site than at the mesic–hydric site. These model results (1) underline the utility of a simple linear mixing model, implemented in a Bayesian inference framework, in quantifying source water contributions at sites with contrasting physiographic characteristics, and (2) highlight the informed judgement that should be made in interpreting mixing model results, of import particularly in surveying groundwater use patterns by vegetation from regional to global scales. Copyright © 2016 John Wiley & Sons, Ltd.     

Morning Boundary-Layer Turbulent Kinetic Energy by Theoretical Models

A major factor that influences the diurnal variation of turbulent kinetic energy (TKE) is the sensible heat flux at the surface. Here, the TKE variations are analysed during the morning transition phase because subsequent to the neutral or stable stratification during the night, peaks of concentration of scalars develop. The characteristics of the TKE during the growth phase of convection are analysed with the help of two analytical models. For this purpose, a three-dimensional spectral model of the growth of convection, starting from a neutral layer, and other formulations of micrometeorological parameters such as the convective and neutral spectra, velocity variance and dissipation rates are utilised. The peak values in the TKE spectra in the lower, middle and upper levels of the convective boundary layer showed a migration to higher wavelengths as the convection increased with time. The TKE evolutions generated by the analytical models agree fairly well with the results of large-eddy simulation for three vertical levels.