Earthquakes,catastrophic sediment additions and the response of urban stream communities

Disturbance events can regularly impact stream ecosystems; however, large-scale catastrophic disturbances are rare. From September 2010 to September 2011 Christchurch City experienced over 8500 earthquakes including a magnitude 7.1. One consequence was catastrophic additions of silt and sand into waterways throughout the city. Of 161 km of permanent waterways, 102 km (63%) were affected by earthquake siltation. Benthic invertebrates and fish communities were compared across 16 streams with differing siltation. Invertebrate taxonomic richness decreased significantly (mean 17 taxa reduced to 10 taxa) and EPT taxa (Ephemeroptera, Plecoptera and Trichoptera) were removed entirely from streams receiving heavy siltation. Fish richness and density decreased significantly, with fish absent from some heavily silted streams. Many of these urban streams are sourced from springs and their stable flows and low gradient limit their ability to flush sediment. We predict that without human intervention there will be a long-term sediment legacy and it may take many years for these streams to recover from this catastrophic disturbance.     

Cape cormorants decrease,move east and adapt foraging strategies following eastward displacement of their main prey

Numbers of Cape cormorants Phalacrocorax capensis breeding in South Africa decreased by nearly 50% from approximately 107 000 pairs in 1977–1981 to 57 000 pairs in 2010–2014. Although four colonies had >10 000 pairs in 1977–1981, there was just one such colony in 2010–2014. Almost all the decrease occurred after the early 1990s off north-west South Africa, between the Orange River estuary and Dassen Island. South of this, the number breeding in the two periods was stable, with some colonies being formed or growing rapidly in the 2000s. The proportion of South Africa’s Cape cormorants that bred south of Dassen Island increased from 35% in 1977–1981 to 66% in 2010–2014, with the opposite situation observed in the north-west. This matched a shift to the south and east in the distributions of two of the Cape cormorant’s main prey species, anchovy Engraulis encrasicolus and sardine Sardinops sagax. In 2014, an apparent scarcity of prey in the north-west resulted in Cape cormorants attempting to take bait from hooks of fishing lines over an extended period, a behaviour not previously recorded. The number of Cape cormorants breeding in the south may be constrained by the absence of large islands between Dyer Island in the west and Algoa Bay in the east. If so, it may be possible to bolster the southern population through the provision of appropriate breeding habitat, such as platforms, or restricting human disturbance at suitable mainland cliff breeding sites.     

The influence of long emersion on biota, ammonium fluxes and nitrification in intertidal sediments of Marennes-Oléron Bay, France

A comparative study between waterlogged and reflooded intertidal sediments was undertaken in March and June 1999 through statistical analysis of selected sediment parameters (biota, salinity, O2, Eh), pool sizes and benthic fluxes of nutrients (NH4+, NO2-, NO3-) and nitrification rates. In March samples, absence of polychaetes and oligochaetes from upper sediment horizons were due to erosional events sweeping away surface sediments. Presence of richer annelid assemblages in June samples indicated more stable hydrodynamic conditions that favoured the development of benthic microalgae biofilms. Dewatering of sediments during a 3-day emersion period promoted a salinity rise on top layers, migration of pore water ions towards the sediment surface, and created sediment fissures that accelerated water exchange on reflooding. Reflooded and waterlogged sediment systems were comparable with respect to the release of NH4+ to overlying water but were different with respect to nitrification rates. Sediment-water NH4+ fluxes were higher (P = 0.011) in March (3.3 mmol m(-2) day(-1) compared to June (1.4 mmol m(-2) day(-1) due to higher macrofauna biomasses and lower benthic microalgae concentrations in March samples. Potential nitrification rates (range from 19 to 60 mmol NO3- (-2) day(-1)) were not statistically different between March and June. A thinner oxic layer in reflooded compared with waterlogged systems reflects a decrease of O2 diffusion into sediment at high salinities which resulted in the fall of the actual nitrification rates (P < 0.05). Our data suggest that long term dessication of intertidal sediments may depress the nitrification process at the ecosystem level.     

Spatio-temporal variations in intertidal mudflat erodability: Marennes-Oléron Bay,western France

A portable erosion device (ERIS) was deployed in November 2000 and May 2001 to investigate the spatio-temporal variation of fine-grained sediment erosion over a transect on the intertidal mudflats of Marennes-Oléron Bay, western France. The objective was to relate changes in bed erodability over diurnal emersion periods to bioturbation, rapid changes in sediment characteristics, and microphytobenthos biomass.     

Patterns and trends in seabird bycatch in the pelagic longline fishery off South Africa

Both foreign and domestic pelagic longline fishing vessels operate in South Africa’s Exclusive Economic Zone and adjacent international waters where they kill hundreds of seabirds each year as bycatch. To update assessments of the impact of the pelagic longline fishery on seabirds off South Africa, information on necropsied seabirds and national fisheries observer bycatch records were summarised for 2006–2013. Foreign-flagged (Asian) vessels had 100% observer coverage throughout the study period, whereas only 6% of the fishing effort by South African-flagged vessels was observed (with no coverage in 2011–2013). Vessels with observers caught seabirds at a rate of 0.132 birds per 1 000 hooks, resulting in an estimated mortality of 2 851 individuals (356 per year) comprising 14 species. Extrapolation of the observed fishing sets to the unobserved fishing sets by the South African domestic longline fleet suggested that approximately 750 additional birds were likely killed during the study period, therefore a combined 450 birds were killed per year. White-chinned petrel Procellaria aequinoctialis was the most frequently killed species (66%), followed by ‘shy-type’ albatrosses Thalassarche cauta/steadi (21%), black-browed albatross T. melanophris (7%), Indian yellow-nosed albatross T. carteri (3%), and Cape gannet Morus capensis (2%). The seabird bycatch rates were lower than in 1998–2005. Nationality of the vessel, time of line-setting, moon phase, year, season, fishing area, and seabird bycatch mitigation measures all influenced seabird mortality. Concurrent with 100% observer coverage, significant reductions in the seabird bycatch rate occurred in the Asian fleet in the latter years of the study, and these rates now approximate the national target (0.05 birds per 1 000 hooks). However, seabird bycatch rates remained high in the South African fleet, where no observers were deployed during 2011–2013, highlighting the need for independent observer programmes in fisheries—a matter of global interest. Suggestions are made as to how seabird bycatch by pelagic longline fisheries off South Africa may be further reduced.     

Influence of hydro-sedimentary factors on mollusc death assemblages in a temperate mixed tide-and-wave dominated coastal environment: Implications for the fossil record

Mollusc death assemblages were recovered in 98 subtidal sampling stations on the seafloor of the shallow Pertuis Charentais Sea (Atlantic coast of France). Taxonomic composition and spatial distribution of death assemblages were investigated, as well as their response to sediment grain size (field data), bottom shear stress (coupled tide and wave hydrodynamic modelling), and sediment budget (bathymetric difference map). Results showed that molluscs are likely to be reliable paleoenvironmental indicators since death assemblages were able to acquire ecological changes within years (decadal-scale taphonomic inertia), and live–dead agreement inferred from existing data on living benthic communities was high, except close to river mouths and intertidal mudflats that provide terrestrial and intertidal species to subtidal death assemblages, respectively. Taxonomic composition of these within-habitat death assemblages strongly depended on sediment grain size and bottom shear stress, similarly to living subtidal communities. Post-mortem dispersal of shells, owing to relatively low bottom shear stress in the area, was only of a few 10s to 100s of meters, which shows that death assemblages preserved environmental gradients even at a fine spatial scale. Sediment budget had also a significant influence on death assemblages. Thick-shelled epifaunal species were correlated with erosion areas on one side, and thin-shelled infaunal species with deposition on the other, showing that mollusc fossil assemblages could be used as indicators of paleo-sedimentation rate. This new proxy was successfully tested on a previously published Holocene mollusc fossil record from the same area. It was possible to refine the paleoenvironmental interpretation already proposed, in accordance with existing stratigraphic and sedimentological data.     

Dynamics and sources of suspended particulate organic matter in the Marennes-Oléron oyster farming bay: Insights from stable isotopes and microalgae ecology

The aim of this study was to distinguish between sources of the complex variety of Marennes-Oléron Bay suspended particulate organic matter (SPOM) contributing to the tropho-dynamics of the Marennes-Oléron oyster farming bay. Basic biomarkers (Chl a, C/N and POC/Chl a ratios), carbon and nitrogen stable isotopes from SPOM were analyzed and the microalgae community was characterized. The sampling strategy was bimonthly from March 2002 to December 2003; samples were taken from an intertidal mudflat. Four main sources contributed to the SPOM pool: terrigenous input from rivers, neritic phytoplankton, resuspended microphytobenthos and periodic inputs from intertidal Zostera noltii meadows. Seasonal fluctuations were observed in both years of the study period: (1) SPOM collected in the spring of 2002 (δ¹³C = −25‰ to −23‰) was mainly composed of fresh estuarine inputs; (2) SPOM from the summer and fall of 2002 and 2003 was predominantly neritic phytoplankton (δ¹³C = − 22‰ to −19‰); (3) SPOM from the winter of 2002, spring of 2003 and winter of 2003 (δ¹³C = −21 to −23‰) was composed of a mixture of decayed terrigenous river inputs and pelagic phytoplankton, which was predominantly resuspended microphytobenthos. In the summer of 2003—the warmest summer on record in southern France and Europe—SPOM was particularly enriched for ¹³C, with δ¹³C values ranging from −14‰ to −12‰. Pulses in δ¹³C values, indicative of ¹³C-enriched decaying materials, extended into the fall. These were attributed to benthic intertidal inputs, including both resuspended microphytobenthos and Z. noltii detritus. Changes in SPOM sources in Marennes-Oléron Bay may lead to differences in the quality of the trophic environment available for reared oysters.     

Effects of short-term environmental disturbances on living benthic foraminifera during the Pacific oyster summer mortality in the Marennes-Oléron Bay (France)

Sediment cores were collected from April to August 2004 on tidal mudflats of the macrotidal Marennes-Oléron Bay (SW France), famous for the cultivation of Pacific oysters (Crassostrea gigas). The response of living (stained) benthic foraminifera to short-term biogeochemical disturbances in the sediment and overlying water, which may be involved in oyster summer mortality, was monitored. Short-term hypoxia occurred in early June, in conjunction with a sudden rise in temperature. In mid-June, the ammonia content of sediment porewater increased, leading to potentially maximal flux towards overlying waters. Foraminiferal assemblages, particularly in the topmost layer, were altered. Ammonia tepida was the most tolerant to temperature increase and hypoxic conditions whereas Brizalina variabilis and Haynesina germanica were sensitive to organic degradation and hypoxia. Cribroelphidium gunteri was the most opportunistic during recolonisation. Benthic foraminifera showed that short-term biochemical changes in the sediment are toxic and may be involved in the summer mortality of Pacific oysters.     

Does one size fit all? An evaluation of length–weight relationships for New Zealand's freshwater fish species

Length–weight relationships are a fundamental tool for assessing populations and communities in fisheries science. Many researchers have collected length–weight data throughout New Zealand, yet parameters describing these relationships remain unpublished for many species of freshwater fish. We compiled 285,124 fish records from researchers and institutions across New Zealand to parameterise length–weight equations, using both power and quadratic models, for 53 freshwater species belonging to 13 families. The influence of location and sex on length–weight relationships was also assessed. Location, in particular, generated different length–weight relationships for 65% of the species examined. Length–weight equations were validated by comparing predicted weights against independently measured weights from 25 electrofished sites across New Zealand and the equations were highly accurate (R²>0.99). Recommendations are made about how to robustly apply this new resource which should assist freshwater fisheries researchers throughout New Zealand.