NPZ Models of Plankton Dynamics: Their Construction, Coupling to Physics, and Application

Nutrient-phytoplankton-zooplankton (NPZ) models have been in use in oceanography for at least three decades, and are still a common research tool. Given the discoveries of the last two decades, particularly concerning the role of bacteria in the plankton, there are questions as to whether NPZ models can still be supported as a useful tool in planktonic research. Here I review the construction of NPZ models, and some of the physical platforms they have been coupled to. I then discuss the applications of NPZ-physical models, and conclude that they still constitute an important and viable research tool, provided that the questions being explored are clearly stated. This revised version was published online in August 2006 with corrections to the Cover Date.     

3D gravity modelling for Anyongbok Seamount in the East Sea

A seamount chain with an approximately WNW trend is observed in the northeastern Ulleung Basin. It has been argued that these seamounts, including two islands called Ulleung and Dok islands, were formed by a hotspot process or by ridge related volcanism. Many geological and geophysical studies have been done for all the seamounts and islands in the chain except Anyongbok Seamount, which is close to the proposed spreading ridge. We first report morphological characteristics, sediment distribution patterns, and the crustal thickness of Anyongbok Seamount using multibeam bathymetry data, seismic reflection profiles, and 3D gravity modeling. The morphology of Anyongbok Seamount shows a cone shaped feature and is characterized by the development of many flank cones and flank rift zones. The estimated surface volume is about 60 km³, and implies that the seamount is smaller than the other seamounts in the chain. No sediments have been observed on the seamount except the lower slope, which is covered by more than 1,000 m of strata. The crustal structure obtained from a 3D gravity modeling (GFR = 3.11, SD 3.82 = mGal) suggests that the seamount was formed around the boundary of the Ulleung Plateau and the Ulleung Basin, and the estimated crustal thickness is about 20 km, which is a little thicker than other nearby seamounts distributed along the northeastern boundary of the Ulleung Basin. This significant crustal thickness also implies that Anyongbok Seamount might not be related to ridge volcanism.     

On the geologic structure of the Explora Escarpment (Weddell Sea,Antarctica) revealed by satellite and Shipboard data evaluation

Bathymetric, gravity, and magnetic data from Antarctic expeditions with RV POLARSTERN and satellite altimeter data from the Geosat Geodetic Mission are analysed using methods from geostatistics and geophysical inverse theory.The Explora Escarpment represents the edge between the Antarctic Continental Shelf and the Weddell Abyssal Plain. It is an important link in the reconstruction of Gondwana breakup, but a feature as large as the 2000 m deep Wegener Canyon was only discovered in 1984, when extensive bathymetric, gravimetric, and magnetic surveys with RV POLARSTERN began.Geostatistics, the theory of regionalized variables, is applied to integrate dense surveys of Wegener Canyon and sparse observations in adjacent areas into maps with full coverage of the 230 km by 330 km area at 10°–20° W/70°–72° S. The resultant highresolution bathymetric and gravity maps reveal detailed structures of the Explora Escarpment. Using geophysical inversion, the gravity terrain effect is calculated. Satellite data are used for their better coverage, but have much lower resolution. Nevertheless, the structures of Wegener Canyon and other more prominent features appear with surprisingly good correlation also in the Geosat altimeter data. While it was initially supposed that Wegener Canyon is purely an erosional structure, the magnetic map now provides evidence of the canyon's tectonic origin.     

Microcoleus autumnalis and filamentous algae-dominated mats and chlorophyll-a increase with agricultural land use but respond differently to associated nutrient and sediment enrichment

ABSTRACT

This study investigated the impact of pastoral land use and nutrient and fine sediment inputs on Microcoleus autumnalis and filamentous algae-dominated mats, and benthic chlorophyll-a in streams (lower North Island, New Zealand). Surveying and sampling was undertaken monthly at 61 sites spanning a wide gradient in catchment cover and environmental conditions. Two boosted regression tree models were built. The first models included pastoral land cover and five environmental variables as predictors. In the second model pastoral land cover was replaced by nutrient/sediment data. The abundance of the two mat types and chlorophyll-a increased when pastoral land cover was between 20% and 70% (model 1). Replacement of pastoral land cover by nutrient/sediment data (model 2) slightly improved the model fit for all three periphyton variables. Microcoleus autumnalis-dominant mats increased with dissolved inorganic nitrogen concentrations up to ca. 0.6?mg?L^?1, and in streams with more frequent flushes. In contrast, filamentous algal-dominated mats increased with turbidity, and in streams with less frequent flushes. Chlorophyll-a generally followed the response of the dominant periphyton type. Increased knowledge on responses of specific periphyton types, rather than total biomass, to environmental variables is essential to guide effective management strategies.     

Wave reflection from partially perforated-wall caisson breakwater

In 1995, Suh and Park developed a numerical model that computes the reflection of regular waves from a fully perforated-wall caisson breakwater. This paper describes how to apply this model to a partially perforated-wall caisson and irregular waves. To examine the performance of the model, existing experimental data are used for regular waves, while a laboratory experiment is conducted in this study for irregular waves. The numerical model based on a linear wave theory tends to over-predict the reflection coefficient of regular waves as the wave nonlinearity increases, but such an over-prediction is not observed in the case of irregular waves. For both regular and irregular waves, the numerical model slightly over- and under-predicts the reflection coefficients at larger and smaller values, respectively, because the model neglects the evanescent waves near the breakwater.     

The dynamic behaviour of a river-dominated tidal inlet, River Murray, Australia

Australia's largest river, the River Murray, discharges to the southern ocean through a coastal lagoon and river-dominated tidal inlet. Increased water extractions upstream for irrigation have led to significantly reduced flows at the mouth and, as a result, the area is undergoing rapid change, particularly with regard to the rate at which sediment is being transported into the lagoon. Based on detailed and accurate bathymetric surveys it has been possible to estimate that the rate of lagoon in-filling is of the order of 100,000 m³ per year for the period June 2000 to May 2003, although the actual rate shows significant year to year variability. Dredging of the lagoon commenced in 2000 in an attempt to reverse the trend.In an effort to understand the behaviour of the inlet a one-dimensional numerical model of the inlet has been developed. The model extends the original of van de Kreeke by including a dynamic inlet throat area based on predicted river flows and a sediment transport module to predict the resulting net sediment transport. Comparisons with water level data collected on both the ocean and lagoon sides of the mouth have shown that the model is able to predict the attenuation and lag of the tidal signal reasonably well. The sediment transport model was based on predicted sediment concentrations in the surf zone and was found to predict the rate of sediment in-filling to an acceptable level of accuracy. It is envisaged that the model will be a useful management tool, especially since it is possible to manipulate river discharges to the mouth.     

礁膜配子放散条件的研究

本文报道了礁膜配子的放散与温度、光照、比重的关系。结果表明，自然海区的礁膜在白天大量放散配子。配子放散的适宜温度为１９－２１℃；光照为２０００－５０００ｌｘ时能促进配子大量放散出来；配子放散的适宜比重为１．０５－１．０２５；这些研究结果将为礁膜人工育苗提供一些科学依据。     

任意曲线曲面上重磁位场转换的B样条函数法

提出用B样条函数求解曲线、曲面上重磁位场的向上延拓,水平、垂向导数计算,磁异常分量互换的方法。该方法的特点是:原理简明,程序通用性强,计算精度高。     

A singular evolutive extended Kalman filter to assimilate ocean color data in a coupled physical–biochemical model of the North Atlantic ocean

Within the European DIADEM project, a data assimilation system for coupled ocean circulation and marine ecosystem models has been implemented for the North Atlantic and the Nordic Seas. One objective of this project is to demonstrate the relevance of sophisticated methods to assimilate satellite data such as altimetry, surface temperature and ocean color, into realistic ocean models. In this paper, the singular evolutive extended Kalman (SEEK) filter, which is an advanced assimilation scheme where three-dimensional, multivariate error statistics are taken into account, is used to assimilate ocean color data into the biological component of the coupled system. The marine ecosystem model, derived from the FDM model [J. Mar. Res. 48 (1990) 591], includes 11 nitrogen and carbon compartments and describes the synthesis of organic matter in the euphotic zone, its consumption by animals of upper trophic levels, and the recycling of detritic material in the deep ocean. The circulation model coupled to the ecosystem is the Miami isopycnic coordinate ocean model (MICOM), which covers the Atlantic and the Arctic Oceans with an enhanced resolution in the North Atlantic basin. The model is forced with realistic ECMWF ocean/atmosphere fluxes, which permits to resolve the seasonal variability of the circulation and mixed layer properties. In the twin assimimation experiments reported here, the predictions of the coupled model are corrected every 10 days using pseudo-measurements of surface phytoplankton as a substitute to chlorophyll concentrations measured from space. The diagnostics of these experiments indicate that the assimilation is feasible with a reduced-order Kalman filter of small rank (of order 10) as long as a sufficiently good identification of the error structure is available. In addition, the control of non-observed quantities such as zooplankton and nitrate concentrations is made possible, owing to the multivariate nature of the analysis scheme. However, a too severe truncation of the error sub-space downgrades the propagation of surface information below the mixed layer. The reduction of the actual state vector to the surface layers is therefore investigated to improve the estimation process in the perspective of sea-viewing wide field-of-view sensor (SeaWiFS) data assimilation experiments.