Effect of nitrogen, phosphorous, and their interaction on coral reef algal succession in Glover's Reef, Belize

Nitrogen and phosphorous fertilizers were used to determine their short-term summer effects on algal colonization, abundance, and species composition in moderate herbivory treatments. Secondary succession of algae on coral skeletons was examined in four treatments: an untreated control, a pure phosphate fertilizer, a pure nitrogen fertilizer, and an equal mix of the two fertilizers. Turf algae cover was the only measure of algae abundance to respond significantly to fertilization. Turf cover was three times higher in treatments with added nitrogen when compared with the pure phosphorus treatment. These turfs were dominated by green and cyanobacteria taxa, namely Enteromorpha prolifera, Lyngbya confervoides, and two species of Cladophora. The phosphate treatment was dominated by encrusting corallines and the cyanobacteria L. confervoides, while the controls had the highest cover of frondose brown algae, namely Padina sanctae-crucis and two species of Dictyota. Results indicate that turf algae were co-limited by nitrogen and phosphorus but enrichment appeared to inhibit brown frondose algae that currently dominate these reefs. Number of species was lowest on the pure phosphorus and nitrogen treatments, highest in the controls and intermediate in the mixed treatments, which suggests that diversity is reduced most by an imbalanced nutrient ratio.     

Relationship between valve activity, microalgae concentration in the water and toxin accumulation in the digestive gland of the Pacific oyster Crassostrea gigas exposed to Alexandrium minutum

The complexity of the relationships between Alexandrium minutum (A.m.) concentration in the water ([A.m.]_w), Paralytic Shellfish Poisoning contamination in the digestive gland ([PSP]_dg) and valve behavior was explored in oysters Crassostrea gigas. Two experiments were conducted, during which oysters’ valve behaviour were analyzed. Oysters, first acclimated for 10-days with the non harmful microalgae Heterocapsa triquetra (H.t.), were exposed to four microalgae mixtures at constant total concentrations of 10 × 10³ cells ml⁻¹ (experiment-1) and 5 × 10³ cells ml⁻¹ (experiment-2): 100% A.m.; 50% A.m.-50% H.t.; 25% A.m.-75% H.t.; 100% H.t. At the end of experiment-2, [PSP]_dg were measured.At 10 × 10³ cells ml⁻¹, the microalgal ingestion decreased (p < 0.05) with increasing [A.m.]_w but not at 5 × 10³ cells ml⁻¹ (p > 0.05). The frequency of microclosures specifically increased with [A.m.]_w (p < 0.05) and the opening duration with [PSP]_dg (p < 0.0001). Oysters exhibiting the maximum increase in opening duration also exhibited the highest [PSP]_dg. The results are discussed in terms of oyster physiology and origin of the behavioral response.     

Endogenous viral elements in algal genomes

Endogenous viral elements （EVEs） are host-genomic fragments originated from viral genomes. They have been found universally in animal and plant genomes. Here we carried out a systematic screening and analy-sis of EVEs in algal genomes and found that EVEs commonly exist in algal genomes. We classified the EVE fragments into three categories according to the length of EVE fragments. Due to the probability of sequence similarity by chance, we ignored the potential function of medium-length EVE fragments. However, long-length EVE fragments probably had capability to encode protein domains or even entire proteins, and some short-length EVE fragments had high similarity with host＇s siRNA sequences and possibly served functions of small RNAs. Therefore, short and long EVE fragments might provide regulomic and proteomic novelty to the host＇s metabolism and adaptation. We also found several EVE fragments shared by more than 3 algal genomes. By phylogenetic analysis of the shared EVEs and their corresponding species, we found that the integration of viral fragments into host genomes was an ancient event, possibly before the divergence of Chlorophytes and Ochrophytes. Our findings show that there is a frequent genetic flow from viruses to algal genomes. Moreover, study on algal EVEs shed light on the virus-host interaction in large timescale and could also help us understand the balance of marine ecosystems.     

Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts of essential brown algae (Phaeophyceae) in China

The chloroplast and mitochondrion of brown algae （Class Phaeophyceae of Phylum Ochrophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lineages by using algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Kingdom Chromista. We have found that there is a split between Class Phaeophyceae of Phylum Ochrophyta and the others （Phylum Cryptophyta and Haptophyta） in Kingdom Chromista, and identified more diversity in chloroplast genes than mitochondrial ones in their phylogenetic trees. Taxonomy resolution for Class Phaeophyceae showed that it was divided into Laminariales-Ectocarpales clade and Fucales clade, and phylogenetic positions of Kjellmaniella crassi-folia, Hizikia fusifrome and Ishige okamurai were confirmed. Our analysis provided the basic phylogenetic relationships of Chromista algae, and demonstrated their potential ability to study endosymbiotic events.     

The Corwen Outlier and its implications for the Mid Mississippian palaeogeography of North Wales,UK

The isolated outlier of Visean (Mid Mississippian) limestones and sandstones near Corwen, North Wales, UK, provides a critical constraint on regional tectonic and palaeogeographical models. The late Asbian to Brigantian succession comprises a series of shoaling‐upwards cycles (parasequences). These were the product of forced, glacioeustatic regressions and have boundaries that testify to emergence, karstic dissolution and soil formation on a low gradient carbonate platform prior to flooding and the resumption of marine deposition. The recognition of two of the main marker beds within the North Wales Visean succession (Main Shale and Coral Bed) together with a newly applied foraminiferal and algal biozonation allow the outlier succession to be correlated with other Visean outcrops in the region and more widely throughout the British Isles. In revealing regional thickness and facies variations, these comparisons show that the outlier succession was deposited landward of the early Asbian shoreline in a region of enhanced subsidence localized along the Bala Lineament. The Corwen Outlier suggests that, within narrow gulfs associated with the region's major tectonic lineaments, Mississippian carbonate facies extended farther south into the contemporary hinterland of older rocks and that, in response to Brigantian climate change, these topographic features likely also influenced fluvial catchments supplying siliciclastic sediment to the platform's landward margin and, subsequently, Namurian deltas. Contrary to earlier suggestions, Visean outcrop patterns, facies distributions and thicknesses in the vicinity of the Bala Lineament can be explained without the need to invoke extensive post‐depositional lateral displacements. BGS © NERC 2013. Geological Journal © John Wiley & Sons Ltd.     

http://www.sciencedirect.com/science/article/pii/S1674987113000285

Facies characterization of Piacenzian （late Pliocene） carbonate sediments of the Guitar Formation in Car Nicobar Island,India and the subsequent integration of paleoecological data have been applied to interpret the paleoenvironment of the coralline algal-reef deposits.Thin-section analysis reveals that Amphiroa,Corallina and Jania are the dominant geniculate corallines,while Lithothamnion,Mesophyllum,Phymatolithon,Lithophyllum,Spongites and Lithoporella are the major non-geniculate corallines contributing to the sedimentary facies.Numerous small and larger benthic foraminifera also dominate the biogenic assemblages.Corals,barnacle shells,echinoid spines,fragments of bryozoans,mollusks and ostracodes are the subordinate constituents.Grainstones dominate the studied facies while packstones and boundstones （with wackestone elements） are the sub lithofacies showing a fair representation.Six carbonate facies presenting a complete reef complex have been distinguished that were deposited in shallow intertidal,back-reef shelf/lagoon,reef and deeper fore-reef shelf settings.Evidences of coralline algal and benthic foraminiferal assemblages,taphonomic signatures of abrasion and fragmentation,grain size,angularity and encrustation indicate a shallow to relatively deeper bathymetric horizon of approximately 10-60 m that corresponds to a regime of high to moderate hydrodynamic conditions.     

Planetary Bioresources and Astroecology: 1. Planetary Microcosm Bioassays of Martian and Carbonaceous Chondrite Materials: Nutrients, Electrolyte Solutions, and Algal and Plant Responses

The biological fertilities of planetary materials can be assessed using microcosms based on meteorites. This study applies microcosm tests to martian meteorites and analogues and to carbonaceous chondrites. The biological fertilities of these materials are rated based on the soluble electrolyte nutrients, the growth of mesophile and cold-tolerant algae, and plant tissue cultures. The results show that the meteorites, in particular the Murchison CM2 carbonaceous chondrite and DaG 476 martian shergottite, contain high levels of water-extractable Ca, Mg, and SO₄-S. The martian meteorites DaG 476 and EETA 79001 also contain higher levels of extractable essential nutrients NO₃-N (0.013-0.017 g kg⁻¹) and PO₄-P (0.019-0.046 g kg⁻¹) than the terrestrial analogues. The yields of most of the water-extractable electrolytes vary only by factors of 2-3 under a wide range of planetary conditions. However, the long-term extractable phosphate increases significantly under a CO₂ atmosphere. The biological yields of algae and plant tissue cultures correlate with extractable NO₃-N and PO₄-P, identifying these as the limiting nutrients. Mesophilic algae and Asparagus officinalis cultures are identified as useful bioassay agents. A fertility rating system based on microcosm tests is proposed. The results rate the fertilities in the order martian basalts > terrestrial basalt, agricultural soil > carbonaceous chondrites, lava ash > cumulate igneous rock. The results demonstrate the application of planetary microcosms in experimental astroecology to rate planetary materials as targets for astrobiology exploration and as potential space bioresources. For example, the extractable materials in Murchison suggest that concentrated internal solutions in carbonaceous asteroids (3.8 mol L⁻¹ electrolytes and 10 g L⁻¹ organics) can support and disperse microorganisms introduced by natural or directed panspermia in early solar systems. The results also suggest that carbonaceous asteroids and martian basalts can serve as potential future resources for substantial biological populations in the Solar System.     

Modelling the growth of cyanobacteria (GrowSCUM)

Toxic cyanobacteria have become a common nuisance in freshwater lakes and reservoirs throughout the world, sometimes resulting in the closure of sites with high amenity value. Cyanobacteria are able to regulate their buoyancy state in response to changing photosynthetic rates. Additionally, the cyanobacteria are liable to become entrained within wind-induced near-surface turbulent currents, resulting in mixing and mass transport. These movement processes have been modelled. A mathematical function is presented which describes light- and nutrient-limited cyanobacterial growth. The growth model is integrated with a previous movement model (SCUM: simulation of cyanobacterial underwater movement) as movement patterns and wind-induced lake mixing strongly affect the intensity and duration of light received by the cyanobacteria and thereby determine the photosynthetic potential. Results of the model suggest that cyanobacteria are resistant to periods of lake mixing and continue to increase their biomass, but at a depressed rate. Growth is most rapid under calm conditions. The results agree well with field-based findings, confirming the validity of the growth function.     

盐度胁迫下中肋骨条藻和东海原甲藻的生长与內源多胺调节作用的关系*

提要 实验室内开展了不同盐度梯度下培养常见的两种赤潮藻中肋骨条藻(Skeletonema costatum)和东海原甲藻(Prorocentrum donghaiense)的实验,根据logistic生长模型获得了生长参数Bf和mmax,并测定了藻体中过氧化物酶(POD)、二胺氧化酶(DAO)、多胺氧化酶(PAO)的活性和丙二醛(MDA)、腐胺(Put)、亚精胺(Spd)、精胺(Spm)的含量。结果表明,高、低盐度胁迫下,两种藻均会积累MDA,活性氧自由基的伤害增强,藻的生长受到了抑制。同时,两种藻都会提升多胺含量,通过多胺的调节作用来缓解胁迫的伤害,促进生长,但是在提升的多胺种类和形态上,两种藻存在着差异。高盐胁迫下,中肋骨条藻会提升多胺尤其是游离态多胺的含量来缓解伤害,东海原甲藻则依靠结合态的亚精胺和游离态的精胺的调节作用。低盐胁迫下,中肋骨条藻会提升游离态腐胺的含量,而东海原甲藻体内各形态的多胺都会上升。     

A Model Describing the Time Course and Variability in Toxicity of Hydrophobic Chemicals to Aquatic Organisms-Toxicity of chlorinated benzenes to marine algae

The growth of Chlorella marine, Nannochloris oculate, Pyramimonaos sp., Platymonas subcordiformis and Phaeodactylum tricornutum exposed to chlorobenzene, 1,2-dichlorobenzene, 1, 2, 3, 4-tetrachlorobenzene and pentachlorobenzene was tested. The Boltzman equation was used to describe organism growth. The time course for uptake of hydrophobic organic chemicals (HOCs) by aquatic organisms was expressed by incorporating growth and, if desired, the effect of metabolism into the HOC bioconcentration process. The probability of any given concentration of HOCs in the organisms causing a specified toxic endpoint was expressed with a modified Weibull distribution function. The combined bioconcentration and probability equations were tested with data for time course of incubation of algae exposed to chlorinated benzenes (CBs). A set of parameters, including the uptake rate constant k1, the elimination rate constant k2 and thereafter the bioconcentration factor on a dry weight basis, BCFD, the critical HOC concentration in the organism resulting in a specified toxic endpoint, C*A, and the spread factor, S, could be obtained by fitting only experimental data for percent growth inhibition(%)-time-CB exposure concentration. The average coefficients of variation within CBs were 15.2% for BCFD, 21.0%for k1, 18.3% for k2, 8.1% for C*A and 9.7% for S. The variability in toxicity (such as EC10, EC50, ECg0) derived from the model equations agreed well with those experimentally observed.