一种基于16S rRNA基因检测海洋浮游细菌群落的微阵列基因芯片

A better understanding of bacterioplankton community shifts following change in marine environments is critical to predict the marine ecosystem function. In order to get a snapshot of the microbial taxonomy profiling of a wide range marine area, a quick, convenient and low cost method would be favorable. In this study, we developed a 16S rRNA gene-based microarray using ARB software, which contained 447 probes targeting 160 families of marine bacteria. The specificity, sensitivity and quantitative capability of this microarray were assessed by single cloned16S rRNA genes. The reliability of this microarray was tested by eight environmental samples. The results showed that the microarray was specific, only 1.16% false results were detected in five single-clone hybridization tests. The microarray could detect DNA samples as few as 1 ng/μL and the signal intensity could reflect the relative abundance of the bacteria in the range of 1 ng/μL to 100 ng/μL of DNA concentration. Hybridization with environmental samples showed that it can discriminate bacterioplankton communities by sites and time. High throughput sequencing results from the eight samples confirmed the hybridization results. It indicated that this developed microarray could be used as a convenient tool to monitor the bacterioplankton community in marine environment.     

芙蓉岛秋季鸟类生物多样性研究

为了解芙蓉岛鸟类生态类群和多样性,本文以2019年9月芙蓉岛鸟类调查数据为基础,利用样点法对芙蓉岛鸟类的种类、生态类群、区系、居留型和鸟类多样性等进行了研究。结果表明：本次调查共记录鸟类5目15科31种,其中国家Ⅱ级保护鸟类7种,列入《濒危野生动植物种国际贸易公约及有效决议汇编》附录Ⅲ中的鸟类1种。从生态类群构成上：鸣禽19种,猛禽7种,涉禽4种,陆禽1种;从鸟类地理区系构成上：广布种23种,古北种7种,东洋界1种;从居留类型构成上：冬候鸟5种,留鸟3种,旅鸟17种,夏候鸟、冬候鸟和旅鸟混合类型6种。鸟类群落多样性指数（H’）为3.83,均匀度指数（J）为0.77。芙蓉岛鸟类优势种为红嘴鸥（Larus ridibundus）、家燕（Hirundo rustica）和树麻雀（Passer montanus）。本文对芙蓉岛鸟类生物多样性进行了报道,对芙蓉岛鸟类资源的本底调查以及该区域鸟类生物多样性保护具有重要意义。     

红树植物拟海桑及其亲本的根际细菌群落特征分析

植物根际微生物群落能够从亲本传递给子代, 从而影响植物的表型。野外调查发现, 海桑属(Sonneratia)红树植物自然杂交杂种拟海桑在野外通常比亲本生长更为强壮, 表现出极强的生存优势。为探究这一现象的原因, 本研究从根际微生物角度出发, 利用细菌16S rRNA基因高通量测序技术, 对采自海南省东寨港的三种红树植物拟海桑(S. × gulngai)及其亲本海桑(S. caseolaris)和杯萼海桑(S. alba)的根际土壤进行根际细菌群落特征分析。结果表明, 三种红树植物根际细菌群落多样性高, 种类丰富, 分属于30门242科351属, 其中变形菌门(Proteobacteria)为最优势门, 在各个样本中丰度超过40%, 子代拟海桑继承亲本的根际微生物多数都属于这一类群。研究发现, 子代拟海桑与两亲本的根际细菌类群组成在门水平存在显著差异, 其中酸杆菌门(Acidobacteria)和放线菌门(Actinobacteria)在子代拟海桑中丰度分别为4.3%和6.5%, 显著高于亲本1%~2%的含量; 在亲本杯萼海桑中, 丰度高达19.8%的栖热菌门(Thermi)在子代中丰度仅有1%, 而热袍菌门(Thermotogae)(5%)甚至消失。总之, 子代拟海桑与亲本杯萼海桑的根际微生物群落组成相对于亲本海桑表现出更大的差异性。土壤理化性质分析发现, 子代拟海桑的土壤全氮(total nitrogen, TN)含量显著低于亲本, 含量相差3倍以上, 相关性分析表明, TN浓度与菌群中的浮霉菌门(Planctomycetes)、放线菌门(Actinobacteria)、酸杆菌门(Acidobacteria)丰度显著负相关。通过功能预测分析发现, 子代拟海桑微生物群落中与基础代谢相关的碳水化合物、氨基酸、能量以及脂质代谢相关的功能基因丰度显著都高于亲本, 表现出代谢能力的增强。本研究认为, 子代拟海桑对亲本的根际土壤微生物进行了选择性继承, 菌群组成更为合理, 在保持菌群高度多样性的同时, 一些根际促生菌的含量增加, 使菌群基础代谢能力增加, 更有利于子代拟海桑的生长。     

Development of fouling communities on vertical structures in the Baltic Sea

The pillars of the bridge connecting the Island of Öland with the Swedish mainland were rebuilt between 1990 and 2000. The renovation produced pristine vertical concrete substrates, which became submerged in known years and seasons. The fouling communities on the pillars were examined in 2001 to determine whether the community structure could be explained in terms of either orderly successional development or of seasonal variation in the settlement of benthic organisms. As well, the communities on the pillars were compared to communities on the vertical surfaces of boulders in the area. The results indicated that an annual species composition is the final stage in the succession on the observed, vertical constructions. The few perennial species add to the variation between pillars as they increase in biomass (Polysiphonia fucoides) or become out-competed (Balanus improvisus). Also, observed seasonal differences in the biomass of these perennial species indicated that the time of year free space becomes available might be an important determinant of the future structure of the community. Comparison between the pillar and boulder communities showed that the artificial structures were not surrogates for the natural hard substrate: pillar communities differed in that they lacked most perennial algal species and had a high biomass of B. improvisus.     

Effects of a Short-term Environmental Change on a Brackish-water Polychaete Community

Abstract. Aquatina lake is a brackish basin, connected with the Adriatic Sea along the mast of Apulia (Italy), with a mean salinity of 26%. The abundance and biomass of fifteen polychaete species were recorded by monthly samples in a pilot area of the lake from February 1989 to February 1990. Naineris laevigata was dominant, both in number of individuals and biomass. During 1990, obstruction of freshwater inflow to the lake caused an increase in salinity up to 4O%, followed by some changes in the polychaete community. Noromasrus hiericeus became dominant, and the abundances of the other species decreased except for Naineris laevipru . Salinity assumed normal values after three months, but community responded slowly becauie the massive presence of N. latericeus inhibited the recovery of other species. An abiotic disturbance, followed by a biotic disturbance, altered the structure of the polychaete community.     

Impact of Two "El Niño" Events of Different Intensity on the Hypoxic Soft Bottom Macrobenthos off the Central Peruvian wast

Abstract. Monthly changes in the community structure of hypoxic soft-bottom macrobenthos have been studied at a station at 34 m depth in Ancón Bay (Peru) before and during two El Niño (EN) events. Of these events, 1982-83 is considered the strongest, and 1991–93 one of the most prolonged in the 20th century. On the oceanographic scale, EN 1982–83 ranges as "very strong", whereas EN 1991–93 ranges as "moderate".
The thermal anomalies at the station during EN 1982–83 (+ 7.8 °C) were almost twice those of EN 1991–93 (+ 4.1 °C). However, the community changes were not in all cases proportional to the extent of warming. Species numbers increased in a similar way (up to 24 species from near zero in each of the two events), but maximum faunal density was five times higher, and mean biomass was twice as high in 1982–83 compared with the event a decade later. Species diversity was slightly higher during EN 1982–83, whereas successional and trophic changes occurred on a broader scale during EN 1991–93. On the whole, the impact of the long-lasting event on the small soft-bottom macrofauna was not much weaker than that of the exceptionally strong event.
The authors discuss the mechanisms which may be responsible for the differences and similarities encountered in the benthic community dynamics during these two events. Both in the unusually strong and the unusually long EN, the community revealed a pattern of early biological response several months ahead of the onset of local warming which marks the official begin of EN. The question is addressed to what extent the increase of certain parameters in the benthic community could be used for predictive purposes.     

Climate change and coral reef bleaching: An ecological assessment of long-term impacts,recovery trends and future outlook

Since the early 1980s, episodes of coral reef bleaching and mortality, due primarily to climate-induced ocean warming, have occurred almost annually in one or more of the world's tropical or subtropical seas. Bleaching is episodic, with the most severe events typically accompanying coupled ocean–atmosphere phenomena, such as the El Niño-Southern Oscillation (ENSO), which result in sustained regional elevations of ocean temperature. Using this extended dataset (25+ years), we review the short- and long-term ecological impacts of coral bleaching on reef ecosystems, and quantitatively synthesize recovery data worldwide. Bleaching episodes have resulted in catastrophic loss of coral cover in some locations, and have changed coral community structure in many others, with a potentially critical influence on the maintenance of biodiversity in the marine tropics. Bleaching has also set the stage for other declines in reef health, such as increases in coral diseases, the breakdown of reef framework by bioeroders, and the loss of critical habitat for associated reef fishes and other biota. Secondary ecological effects, such as the concentration of predators on remnant surviving coral populations, have also accelerated the pace of decline in some areas. Although bleaching severity and recovery have been variable across all spatial scales, some reefs have experienced relatively rapid recovery from severe bleaching impacts. There has been a significant overall recovery of coral cover in the Indian Ocean, where many reefs were devastated by a single large bleaching event in 1998. In contrast, coral cover on western Atlantic reefs has generally continued to decline in response to multiple smaller bleaching events and a diverse set of chronic secondary stressors. No clear trends are apparent in the eastern Pacific, the central-southern-western Pacific or the Arabian Gulf, where some reefs are recovering and others are not. The majority of survivors and new recruits on regenerating and recovering coral reefs have originated from broadcast spawning taxa with a potential for asexual growth, relatively long distance dispersal, successful settlement, rapid growth and a capacity for framework construction. Whether or not affected reefs can continue to function as before will depend on: (1) how much coral cover is lost, and which species are locally extirpated; (2) the ability of remnant and recovering coral communities to adapt or acclimatize to higher temperatures and other climatic factors such as reductions in aragonite saturation state; (3) the changing balance between reef accumulation and bioerosion; and (4) our ability to maintain ecosystem resilience by restoring healthy levels of herbivory, macroalgal cover, and coral recruitment. Bleaching disturbances are likely to become a chronic stress in many reef areas in the coming decades, and coral communities, if they cannot recover quickly enough, are likely to be reduced to their most hardy or adaptable constituents. Some degraded reefs may already be approaching this ecological asymptote, although to date there have not been any global extinctions of individual coral species as a result of bleaching events. Since human populations inhabiting tropical coastal areas derive great value from coral reefs, the degradation of these ecosystems as a result of coral bleaching and its associated impacts is of considerable societal, as well as biological concern. Coral reef conservation strategies now recognize climate change as a principal threat, and are engaged in efforts to allocate conservation activity according to geographic-, taxonomic-, and habitat-specific priorities to maximize coral reef survival. Efforts to forecast and monitor bleaching, involving both remote sensed observations and coupled ocean–atmosphere climate models, are also underway. In addition to these efforts, attempts to minimize and mitigate bleaching impacts on reefs are immediately required. If significant reductions in greenhouse gas emissions can be achieved within the next two to three decades, maximizing coral survivorship during this time may be critical to ensuring healthy reefs can recover in the long term.     

Ecological indicators showing the succession of macrofauna communities in Sonneratia apetala artificial mangrove wetlands on Qi’ao Island at Zhuhai, South China

The Sonneratia apetala artificial mangroves in the intertidal zone of Da Wei Bay at Qi’ao Island of Zhu-hai, South China were chosen as the macrofauna succession plots while bare tidal flats of the same size were established as control plots in surrounding interference-free areas. Conventional change indicators of community structure, such as biomass and biodiversity, and indicators, such as exergy and specific exergy, which reflect the information change of overall communities, were used to analyze the succession of macro-fauna communities inS. apetala artificial mangroves. The similarities and differences in variation tendency of the different ecological indicators and their reflected ecological principles were compared. The results showed that from D-1 to D-1275 after plantingS. apetala, the biomass of the macrofauna communities first increased, which was then followed by an increase in the network relationship between the macrofauna communities （analysis of the Pielou evenness index and Shannon-Wiener diversity index）. The system in-formation （specific exergy） increased the slowest. Between D-1460 and D-2370 after plantingS. apetala, there was a decrease in biomass, network structure, and system information in the succession plots. After the decrease in the system information （the specific exergy）, there was a decline in the network relationships （Pielou evenness index and Shannon-Wiener diversity index）. Biomass was the last indicator to decrease. The similarities and differences among the different ecological indicators varied during the succession pro-cess, which reflected the relativity and differences among the indicators. This study suggested that, although the species diversity index can be an effective indicator of two types of changes （network structure and system information）, it was quite clear that species diversity measurement was not suitable for expressing the changes in biomass during the succession process. While exergy and specific exergy can provide useful information