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91.
Organotin compounds are used in a variety of industrial processes therefore their subsequent discharge into the environment is widespread. Bacteria play an important role in biogeochemical transformations acting as natural decontamination agents. Therefore, screening for tributyltin (TBT)-resistant and -degrading bacteria is relevant for the selection of isolates with decontamination ability of these polluted areas. With this purpose, 50 strains were isolated from sediment and water from Ria de Aveiro and their tolerance to TBT, up to 3mM, was evaluated. Generally, occurrence of highly TBT-resistant bacteria was observed, and Gram negative bacteria exhibited more tolerance to TBT than Gram positive bacteria. A memory response was observed when bacteria were progressively exposed to increasingly higher TBT concentrations. One isolate, Aeromonas veronii Av27, highly resistant to TBT (3mM) uses this compound as carbon source and degrades it to less toxic compounds.  相似文献   
92.
Rock erosion is attracting increasing attention from scientists worldwide. The area encompassing the Saint John Baptist Church, Saint John Village, XVII century ruins in Rio Grande do Sul at the UNESCO World Heritage Site is considered a Brazilian treasure. However, the risk of damage to this site from rock erosion has recently increased tremendously. Generally, the rocky construction such as fence, wall and tomb stone, seems strong but is actually extremely sensitive to erosion caused by lichens, fungi, molds and bacteria. Because of biological erosion and massive exposure, the fresh rock is dominated by clays and microorganisms. Water-adsorbing clays and microorganisms influence the mechanisms of the rock erosion. In this study, the formation of bio-clay-minerals in porous structure of pisolite was demonstrated using electron microscopy. Bacterial clay mineralization can deform the rock structure and even produce organic materials. Biological activity could easily corrode rocky constructions around the Saint John Baptist Church site. The rocks are pisolitic laterites possibly formed in Tertiary over the Kretaceous Parana flood Basalts. Samples inhabited by lichens and fungi were collected from a collapsed wall in the ancient church. The zonal reddish-brown pisolites are 4 mm in diameter in a matrix of clays associated with porous and empty spaces. Elemental distribution maps from X-ray fluorescence microscopy show iron-rich spherules of pisolite, whereas the matrix is composed of Al, Si, Mn, and Sr; thus producing goethite and kaolinite. Transmission electron microscopic observation showed that various types of bacteria inhabit the spherule and are associated with clay minerals and graphite. STEM elemental analysis confirmed the bio-clay-mineralization with Al, Si, S, and Fe, around bacterial cells. The results presented here will improve our understanding of nm-scale bio-mineralization and bio-erosion in lateritic rocks. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.  相似文献   
93.
Precambrian microbial fossils show carbonaceous cellular structure, which often resemble in shape and size cyanobacteria and other prokaryotes. Morphological taxonomy of these minute, simple, and more or less degraded fossils is, however, often not enough to determine their precise phylogenetic positions. Here we report the results of micro-FTIR spectroscopic analyses of well-preserved microfossils in 850 Ma and 1900 Ma stromatolites, together with those of 8 species of extant prokaryotes and 5 of eukaryotes for comparison. These Proterozoic fossils have low CH3/CH2 absorbance ratios (R3/2 < 0.5) of aliphatic CH moieties, suggesting selective preservation of long, straight, aliphatic carbon chains probably derived from bacterial membrane lipids. All the observed R3/2 values of coccoids, filaments and amorphous organic matter resemble lipid fractions of extant Bacteria including cyanobacteria, but not Archaea. The results indicate that Proterozoic microfossils belong to Bacteria, which is consistent with the cyanobacterial origin inferred from morphology. Moreover, the R3/2 value of fossilized cell would reflect chemical composition of its precursor membrane lipid, thus could be a useful new tracer for distinguishing Archaea, Bacteria and possibly Eucarya for fossilized and extant microorganisms.  相似文献   
94.
Here we show a discernibly unique biosilicification pattern for live, metabolically active Synechococcus cyanobacterial cell surfaces compared to dead Synechococcus cells under identical experimental conditions. The live cell treatments showed signs of cell division and the growth of fimbriae indicating metabolic activity during the 5-day silicification experiment. Live treatment cells were also recultivable after the experiments confirming their continued viability. The metabolically active live cyanobacteria treatment bound twice the amount of colloidal SiO2 and held it more tightly compared to the dead cell treatment. Further, biosilicification of the live, actively metabolizing bacteria was unipolar, leaving the core surface largely unencrusted. In contrast, biosilicification of the dead cells was heterogeneous, occurring across the entire cell surface with no observable localized pattern. The directed biosilicification localization of live cell surfaces is likely a bacterial strategy to protect the cell functionality against the potentially inhibitory effects of mineral encrustation. Localization of silica biominerals to the polar end of the cell is also consistent with reported bacteria regulated cell polarity, which, under the experimental pH of 3, would enable localized differential attraction between the charged colloidal silica (+) particles and the bacterial cell polar surface (−). Our results show a novel metabolically-linked distinct colloidal SiO2 biomineralization fingerprint, suggesting a putative biomineralization signature.  相似文献   
95.
We present ecological and isotopic (δ18O and δ13C) data on benthic foraminifera sampled from 4 deep-sea stations in a pockmark field from the deep-water Niger delta (Gulf of Guinea, Equatorial Atlantic Ocean). In addition, a series of sedimentological and (bio)geochemical data are shown to back up foraminiferal observations. All stations are located within 1.2 km of each other, so prevailing oceanographic conditions can be assumed to be similar at each site. Two of the sites (GMMC-01 and GMMC-02) are located in a pockmark (named “pockmark A”) where current methane seepages were recorded by ROV observations. A third station (GMMC-03) is located in the topographic depression interpreted as a collapsed pockmark (named “pockmark B”). The fourth site (GMMC-04) is a reference station, without evidence of past or present seepages. Our observations show that degraded organic matter with low bio-availability is present at all stations with a preferential burial of organic compounds in topographic depressions (GMMC-03 station). Authigenic aragonite is abundant in surface sediments at stations GMMC-01 and -02. Its precipitation is likely related to high rates of methane oxidation during past seep events in episodically active pockmark A. In contrast, the absence of anaerobic methanotrophic Archaea (ANME) during the sampling period (November 2011) suggests that only moderate sulphide and methane oxidation take place close to the sediment–water interface. Compared to the reference site GMMC-04, living foraminifera at the collapsed and episodically active pockmarks show minor changes in terms of diversity, standing stocks and faunal composition. However, the δ13C signal of living and dead (but well-preserved) foraminiferal species (Ceratobulimina contraria, Melonis barleeanus, Uvigerina peregrina) is depleted in the episodically active pockmark A compared to the other stations. Overgrowth of authigenic carbonate on altered foraminifera generates an important shift to lower δ13C values. Dead faunas carry a complex time-averaged message, integrating taphonomic gains and losses related to the temporal variability of gas emission. They reveal major faunal differences that may be useful to detect gas hydrate seepages in different pockmark stages.  相似文献   
96.
We investigated the molecular inventory of River Danube sediments and identified wax esters with 28–36 carbons, with C30, C31 and C32 homologs the most abundant. They consist of various combinations of n-, iso- and anteiso-aliphatic acid and alcohol moieties, with different isomer distributions for the esters with odd and even carbon numbers. The short chain length (C28–C36), high proportion of methyl moieties and presence of monounsaturated esters together suggest a bacterial origin for the wax esters. The concentration in surface sediments varied from 0 to 741 μg/kg, being significantly enriched at locations with high nutrient concentration and high primary productivity. Cluster analysis of denaturing gradient gel electrophoresis (DGGE) band patterns revealed different bacterial communities in surface sediments from the stream and surface sediments from the reservoir. The concentration in a 70 cm core of rapidly deposited sediments decreased significantly with depth, following first order kinetics, suggesting a loss of the esters within ca. 3 years following burial and hence a low probability for preservation in the geological record. Wax esters in rivers have rarely been investigated; our results suggest that they represent a bacterial response to enhanced primary production, triggered by higher nutrient supply.  相似文献   
97.
We have developed a sublimation technique coupled with chemical derivatization and gas chromatography mass spectrometry (GC-MS) to detect nucleobases and other volatile organic compounds derived from bacteria in Mars analog materials. To demonstrate this technique, a sample of serpentine inoculated with Escherichia coli (E. coli) cells was heated to 500 °C for several seconds under Martian ambient pressure. The sublimate was collected on a cold finger, then derivatized and analyzed by GC-MS. We found that adenine, cytosine, thymine and uracil were the most abundant molecules detected in the sublimed E. coli extract by GC-MS. In addition, nucleobases were also detected in sublimed extracts of a deep-sea sediment sample, seawater, and soil collected from the Atacama Desert in Chile after heating the samples under the same conditions. Our results indicate that nucleobases can be easily isolated directly from natural samples using sublimation and then detected by GC-MS after chemical derivatization. The sublimation-based extraction technique is one approach that should be considered for use by future in situ instruments designed to detect organic compounds relevant to life in the Martian regolith.  相似文献   
98.
《Sedimentology》2018,65(4):1213-1245
In a modern peritidal microbial mat from Qatar, both biomediated carbonates and Mg‐rich clay minerals (palygorskite) were identified. The mat, ca 5 cm thick, shows a clear lamination reflecting different microbial communities. The initial precipitates within the top millimetres of the mat are composed of Ca–Mg–Si–Al–S amorphous nanoparticles (few tens of nanometres) that replace the ultrastructure of extracellular polymeric substances. The extracellular polymeric substances are enriched in the same cations and act as a substrate for mineral nucleation. Successively, crystallites of palygorskite fibres associated with carbonate nanocrystals develop, commonly surrounding bacterial bodies. Micron‐sized crystals of low‐Mg calcite are the most common precipitates, together with subordinate aragonite, very high‐Mg calcite/dolomite and ankerite. Pyrite nanocrystals and framboids are present in the deeper layers of the mat. Calcite crystallites form conical structures, circular to triangular/hexagonal in cross‐section, evolving to crystals with rhombohedral terminations; some crystallite bundles develop into dumb‐bell and stellate forms. Spheroidal organo‐mineral structures are also common within the mat. Nanospheres, a few tens of nanometres in diameter, occur attached to coccoid bacteria and within their cells; these are interpreted as permineralized viruses and could be significant as nuclei for crystallite‐crystal precipitation. Microspheres, 1 to 10 μm in diameter, result from intracellular permineralization within bacteria or the mineralization of the bacteria themselves. Carbonates and clay minerals are commonly aggregated to form peloids, tens of microns in size, surrounded by residual organic matter. Magnesium silicate and carbonate precipitation are likely to have been driven by pH – saturation index – redox changes within the mat, related to microenvironmental chemical changes induced by the microbes – extracellular polymeric substances – viruses and their degradation.  相似文献   
99.
The ecological and evolutionary forces that shape interactions between marine sponges and their symbiotic microbiota remain poorly understood. Considerable work has been done to characterize the sponge microbiome, and this research has shown that there are two distinct types of sponges: those with high microbial abundances (HMA) and those with low microbial abundances (LMA). There is no clear evolutionary driver for this distinction, and we have only a limited understanding of how HMA or LMA status affects host phenotypes (e.g. feeding behavior, capacity for nutrient cycling). We had two primary goals with the present study. First, we used a variety of microscopic techniques to compare aspects of host biology (e.g. choanocyte chamber morphology and density) in the context of symbiont status. Secondly, we used molecular approaches to uncover components of ecological structure of bacterial communities in HMA versus LMA sponges (e.g. species richness, evenness). We found that choanocyte chamber density is greater in LMA sponges than in HMA sponges. We also found distinct patterns of organization for bacterial communities in HMA and LMA sponges, although environmental factors, to a lesser degree, also influence community structure in the Floridian sponges we examined. These results suggest that the large bacterial communities found in HMA sponges may allow the host to decrease their heterotrophy versus that of LMA sponges with minimal bacterial communities.  相似文献   
100.
The contribution of bacterial biomass to total particulate organic matter (POM) in the ocean, including exported material, is poorly constrained. To examine potential signatures for the presence and export of bacterioplankton and their detrital remains, here we provide a detailed compound-specific 13C characterization of fatty acids from membrane polar lipids obtained from a water column profile in the Eastern Tropical North Pacific. POM of submicron size (0.2–0.7 μm; “X-POM”) was sampled and analyzed separately from the size class typically collected as “suspended” POM (0.7–53 μm; “L-POM”). The distributions of polar head group classes, specific fatty acid side chains, and natural 13C contents all vary, both between particle size classes and with depth in the water column. In general, the polar lipids in submicron material – and by inference, lipids of bacterial origin – have higher 13C content than polar lipids from larger POM and are equally abundant. Lipid signatures from the photic zone appear to be partially conserved in the suspended pool during transit down the water column. However, bacterial heterotrophy and possibly chemoautotrophy partially overprint these surface signatures. In addition, active metabolisms in the oxygen minimum zone (OMZ) appear to mediate the disaggregation of POM transported from the surface, thus adding complexity to the pathways of mid-water carbon flux and providing additional organic substrates to the OMZ and below. This “substrate injection” may provide important fuel for the denitrification and anammox reactions. Finally, examination of 13C content in polar lipids provides a basis for new interpretation of depth-related variations in δ13C values of bulk suspended POM.  相似文献   
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