海洋生境刀鲚菌群PCR-DGGE指纹图谱构建及分析

为了分析海洋生境刀鲚(Coilia nasus)体内及生长环境菌群结构,作者采用免培养16S r DNA的PCR-DGGE指纹图谱技术,对刀鲚鳃、肠道壁、肠道内容物及水体环境中的菌群结构进行了对比分析。结果表明:变性梯度为35%~55%、浓度为8%的聚丙烯酰胺凝胶,150V 60℃下电泳10 h,DGGE带谱的分离效果较好;刀鲚鳃、肠道壁、肠道内容物及水体样品指纹图谱上分别显示出24、19、14和29条信号强度不同的条带;相同样品重复组细菌结构相似度在80%以上,差异不显著;不同样品之间,刀鲚鳃与海水聚为一支,具有较高的相似度为52%,肠壁与肠内容物相似度为41%。样品菌群主要以未培养菌为主,主要包括变形菌、放线菌和厚壁菌。本文首次成功构建海洋生境刀鲚菌群16S r DNA的PCR-DGGE指纹图谱。     

Characterization of marine microplankton communities of Qingdao coastal areas using randomly amplified polymorphic DNA（RAPD）

Microplankton communities of three coastal sites of Qingdao, Shandong Province, China were investigated using RAPD (random amplified polymorphic DNA) molecular markers and morphological observations. Eight RAPD-primers were selected to amplify the DNA polymorphy. The genetic distances inferred from the pairwise similari-ties were calculated for the phylogenetic tree construction. Meantime, the traditional microscopic determination, a way of visualizing the species composition, was performed to detect the major taxa of microplanktons from all samples. Results showed that: (1) the band sharing index values were in the range of 0. 504 2-0. 763 2 among samples from the same sampling site at different time scales, while 0.406 5-0.685 7 among the samples from different stations at the same time scales, indicating that spatial variations of microplankton communities were more pronounced than temporal ones; (2) samples from the same station basically clustered together, cor-responding to the geographic distribution of the sampling sites; (3) diversity derived from genetic and morpho-logical data did not correspond with each other well.     

Mussel Periostracum from Deep-Sea Redox Communities as a Microbial Habitat: 3. Secondary Inhabitants

Abstract. Vacated microborings in periostracum of live mussels of the Florida Escarpment redox community (depth of 3266 m) become a habitat for a prolific secondary microbiota consisting of a variety of prokaryotic and a few eukaryotic organisms. Periostracum surface is also colonized by diverse microorganisms, dominated by presumed chemolithotrophic bacteria with stacks of intracellular lamellae. Unlike sheltered microflora within borings, the surface community is heavily grazed upon by numerous archaeogastropods and ciliates.     

南黄海和东海毛颚类生态特征的研究Ⅱ.群落特征

在对南黄海和东海毛颚类生态特征的研究数量分布特征后的续篇.重点探讨调查区毛颚类群落性质和群落结构的特征及与海区环境因子的相关性.结果表明,本区共记录毛颚类28种,种类季节变化不明显,周年共有种达64.3%;但群落优势种则有季节差异与区域差异.毛颚类群落多样性指数(H')和均匀度(J')年均值分别为1.68和0.64.H'的平面分布表现出外部海区大于近岸海区的分布格局.在群落中存在4个生态类群,其中近海暖温带类群和广盐暖水类群可分别指示黄海水、浙江沿岸流和东海陆架混合水在南黄海和东海这两个海区的相互推移和消长过程.此外,从不同侧面的计算分析也表明,影响群落特征值(H')的主要因子是温度和盐度.群落性质是以近岸暖温带低盐种和暖水广布种为主,近岸暖水种和大洋暖水种占一定比例的暖温带-亚热带群落结构的特点.     

Sublittoral meiofauna with particular reference to nematodes in the southern Yellow Sea, China

Densities of major meiofaunal taxa were investigated at 34 sampling stations during six cruises by R/V Beidou to the southern Yellow Sea, China from 2000 to 2004, and the community structure of free-living marine nematodes was studied during one of the cruises in 2003. Meiofauna abundance ranged from 487.4 to 1655.3 individuals per 10 cm². Nematodes and harpacticoid copepods were the two most dominant groups, contributing 73.8–92.8% and 3.5–18.7%, respectively, to the total meiofauna abundance. One-way ANOVA showed no significant annual fluctuation of meiofauna and nematode abundances from 2000 to 2004 in the southern Yellow Sea. However, two-way ANOVA based on six stations sampled in 4 years (2001–2004) showed that there were significant differences among the six stations and the 4 sampling years for meiofauna, nematode and copepod abundance. Correlation analysis demonstrated that meiofauna abundance was mainly linked to chloroplastic pigments. Other environmental factors could not be ruled out, however. A total of 232 free-living marine nematode species, belonging to 149 genera, 35 families and 4 orders, were identified. The dominant species in the sampling area were the following: Dorylaimopsis rabalaisi, Microlaimus sp.1, Prochromadorella sp., Promonohystera sp., Cobbia sp.1, Daptonema sp.1, Leptolaimus sp.1, Halalaimus sp.2, Aegialoalaimus sp., Chromadorita sp., Parodontophora marina, Parasphaerolaimus paradoxus, Quadricoma sp.1, Campylaimus sp.1, Halalaimus gracilis, Paramesacanthion sp.1, Paramonohystera sp.1, and Metalinhomoeus longiseta. CLUSTER and SIMPROF analyses revealed three main types of nematode community (or station groups) in the sampling area, including I: coastal community, II: transitory community between coastal and YSCWM (Yellow Sea Cold Water Mass), and III: YSCWM community. Each community was indicated by a number of dominant nematode species. Bio-Env correlation analysis between the nematode community and environmental variables showed that water depth, sediment water content, organic matter, chlorophyll a (Chl-a) and phaeophorbide a (Pha-a) were the most important factors to determine the community structure.     

近岸海域光合色素的生物标志作用研究Ⅰ.台湾海峡特征光合色素的分布及其对浮游植物类群结构的指示

１引言 由于高效液相色谱法（ＨＰＬＣ）的建立,利用光合色素,尤其是类胡萝卜素作为区分浮游植物类群的指示物,成为更方便和有效的化学分类法［１,２］．原因是色素能够很好地进行定量,可涵盖浮游植物的全部粒级范围;而且,适用于大批量样品的分析,甚至可实现现场的船上测定．海洋浮游植物光合色素的研究,比较多地集中在开放大洋,多为利用类胡萝卜素表征浮游植物的类群结构［３－５］;或以光合色素及其降解产物作为浮游植物参与的生物地球化学过程的生物标志物［６－８］．相比较而言,在近岸、陆架海域开展的此类研究较少,且多…     

Impact of flood events on macrobenthic community structure on an intertidal flat developing in the Ohta River Estuary

We investigated the effects of river floods on the macrobenthic community of the intertidal flat in the Ohta River Estuary, Japan, from 2005 to 2010. Sediment erosion by flood events ranged from about 2–3 cm to 12 cm, and the salinity dropped to 0‰ even during low-intensity flood events. Cluster analysis of the macrobenthic population showed that the community structure was controlled by the physical disturbance, decreased salinity, or both. The opportunistic polychaete Capitella sp. was the most dominant species in all clusters, and populations of the long-lived polychaete Ceratonereis erythraeensis increased in years with stable flow and almost disappeared in years with intense flooding. The bivalve Musculista senhousia was also an important opportunistic species that formed mats in summer of the stable years and influenced the structure of the macrobenthic community. Our results demonstrate the substantial effects of flood events on the macrobenthic community structure.     

Surveillance of Invasive Bacterial Pathogens and Human Enteric Viruses in Wastewater Final Effluents and Receiving Water Bodies – a Case Study from Durban,South Africa

The physico‐chemical characteristics and microbial composition of the final effluents of two municipal wastewater treatment plants in South Africa were assessed between July and September 2009. The impact of the treated final effluents on the receiving water bodies was also evaluated. The temperature across all sampling points ranged between 14 and 22°C, while pH varied from 6.9 to 7.6. High levels of turbidity, chemical oxygen demand (COD), ammonia, nitrate, nitrite and orthophosphate (PO₄) were observed in many cases. Turbidity of the samples was in the range of 2.2–288.6 NTU. The concentrations (mg/L) of other physico‐chemical parameters are as follows: COD (9.33–289); ammonia (0.000340–45.4); nitrate (0.062–539); nitrite (0.021–22.6); PO₄ (5.3–33.2). The microbial quality of the effluents discharged from the plants did not comply with the limits set by the South African guidelines with respect to pathogens such as Salmonella, Shigella, Escherichia coli, total coliform, faecal coliform, enterococci, faecal streptococci, and viral particles for effluents intended for discharge into receiving watersheds. This study revealed an undesirable impact on the physico‐chemical and microbial qualities of the receiving water bodies as a result of the discharge of inadequately treated effluents from the wastewater treatment facilities. This poses a health risk to several rural communities which rely on the receiving water bodies primarily as their sources of domestic water and recreational purposes. There is therefore a need for the intervention of appropriate regulatory agencies in South Africa to ensure compliance of treatment facilities with wastewater effluent quality standards.