凯氏拟小球藻己糖激酶基因的克隆及其在不同培养条件下的表达分析

为研究凯氏拟小球藻(Parachlorellakessleri)糖代谢分子机制,本研究采用RT-PCR和RACE技术从凯氏拟小球藻中克隆了己糖激酶基因CkeHK(GenBankID:AHF54566),并对其自养、异养、混养条件下的转录表达进行分析。结果表明,该序列的cDNA全长为1844bp,开放阅读框1389bp,编码462个氨基酸。该蛋白的相对分子质量为49.73,等电点为6.98。实时荧光定量PCR结果显示,以自养培养条件为对照,异养培养和混养培养条件下,CkeHK均能够发生明显上调,且混养条件下上调量比异养条件下上调量更多,说明CkeHK可能在凯氏拟小球藻利用外源糖的过程发挥重要作用,并且光信号对于凯氏拟小球藻利用外源糖可能存在调控作用。这些研究结果为进一步阐明CkeHK的功能及其作用机制奠定了分子基础。     

Cosmic Ray Acceleration Inside Molecular Clouds

Acceleration of charged particles by neutral gas turbulence in giant molecular clouds is considered. The gamma-ray emission from these clouds is estimated. It is shown that molecular clouds can be the counterparts of some of unidentified sources.     

某铁路隧道涌水量预测与分析

为进行某铁路隧道的设计与施工,获取相关的水文地质参数,进行了3个钻孔的抽水试验,以获取相关的水文地质参数。运用地下水径流模数法、大气降雨入渗法和地下水动力学法对隧道涌水量进行了计算,计算结果显示：地下径流模数法的计算值偏小,降水入渗法的计算值适中,地下水动力学法的精度较高,但计算的涌水量值较大;三种方法比较,决定结果采用大值,即涌水量正常值取6150m^3/d,最大涌水量值取9770m^3/d。提出了采用双向自流排水,适当布设施工监控设备的工程建议。     

Molecular modeling of the 10-Å phase at subduction zone conditions

Molecular dynamics (MD) modeling of the 10-Å phase, Mg₃Si₄O₁₀(OH)₂·xH₂O, with x=2/3, 1.0 and 2.0 shows complex structural changes with pressure, temperature and water content and provides new insight into the structures and stabilization of these phases under subduction zone conditions. The structure(s) of this phase and its role as a reservoir of water in the mantle have been controversial, and these calculations provide specific predictions that can be tested by in situ diffraction studies. At ambient conditions, the computed structures of talc (x=0) and the 10-Å phases with x=2/3 and 1.0 are stable over the 350-ps period of the MD simulations. Under these conditions, the 10-Å phases show phlogopite-like layer stacking in good agreement with previously published structures based on powder X-ray diffraction data for samples quenched from high-pressure and high-temperature experiments. The calculations show that the 10-Å phase with x=2.0 is unstable at ambient conditions. The computed structures at P=5.5 GPa and T=750 K, well within the known stability field of the 10-Å phase, change significantly with water content, reflecting changing H-bonding configurations. For x=2/3, the layer stacking is talc-like, and for x=1.0, it is phlogopite-like. The calculations show that transformation between these two stackings occurs readily, and that the talc-like stacking for the x=2/3 composition is unlikely to be quenchable to ambient conditions. For x=2.0, the layer stacking at P=5.5 GPa and T=750 K is different than any previously proposed structure for a 10-Å phase. In this structure, the neighboring basal oxygens of adjacent magnesium silicate layers are displaced by b/3 (about 3 Å) resulting in the Si atoms of one siloxane sheet being located above the center of the six-member ring across the interlayer. The water molecules are located 1.2 Å above the center of all six-member rings and accept H-bonds from the OH groups located below the rings. The b/3-displaced structure does not readily transform to either the talc-like or phlogopite-like structure, because neither of these stackings can accommodate two water molecules per formula unit. There is likely to be a compositional discontinuity and phase transition between the b/3-displaced phase and the phase with phlogopite-like stacking. The simulations reported here are the first to use the recently developed CLAYFF force field to calculate mineral structures at elevated pressures and temperatures.     

中国植物地理学研究进展与展望

中国植物地理学从20世纪20年代初创到当前繁荣经历了100年的发展,近30年来测序技术和生物信息技术的进步,促进了分类、进化和生态等学科交叉融合,中国植物地理学在诸多方面取得了突破性进展,主要包括：① 植物类群和区系在中国整体上按纬度、经度和海拔呈现出规律性;物种丰富度、系统发生多样性和特有性热点集中分布在南部山地,少数分布在北方山地和干旱地区。② 关于大尺度植物多样性格局及形成机制,多数热带起源科的物种多样性格局受冬季低温的限制,而多数温带起源科的物种多样性格局由末次冰期以来的气候变化主导;中国山地植物和群落具有显著的垂直地带性和空间分布异质性,热量因子是中国高山植物区系地理分异的首要气候因子。③ 中国大多数现生被子植物属（约66%）是在中新世及其以后分化;500 mm年等降水线是中国植物区系年龄和植被分区最重要的分界线;中国植物区系、区系中的特征或关键类群的起源和多样化与青藏高原抬升和亚洲季风加强密切相关。未来,时间和空间的结合仍是植物地理学研究的主旋律,类群、群落和区系分化时间的估算及物种分布数据的分辨率是研究者关注的焦点,植物大数据的持续积累和完善将为学科发展提供强大动力和广阔前景。     

Molecular phylogenetic analysis of sulfate-reducing bacteria from deep sediment layers of the tropical West Pacific warm pool

1IntroductionThe tropical West Pacific warm pool(TWP-WP),which spans an area roughly between10°Nto10°S of the equator from Indonesia to the dateline,has the world’s warmest sea surface temperature ofbeing greater than29℃.With the increase of recog-niz…     

海洋有害藻华研究进展

浮游植物不仅是食物链的基础环节,也在生物地球化学循环中起着重要作用。然而,某些种类在一定条件下会过度增殖富集形成有害藻华(因造成水色变为红、绿、褐、金等颜色,所以俗称为赤潮、绿潮、褐潮、金潮等),结果严重影响当地经济、海洋生态系统、全球生物地球化学循环甚至人类健康。近年来,随着水体富营养化、全球气候变化等现象加剧,有害藻华(Harmful Algal Bloom,HAB)的暴发规模和频次呈逐年增加趋势,且相关研究已成为环境生态学领域的热点。本文主要以典型海洋HAB生物为线索,从物种分布、生物监测、主要影响因素、分子机制及防治等方面概述了近十年HAB的主要研究进展,总结了现有研究的优点和不足,并对未来HAB研究做了相关展望。近十年的研究进展主要体现在:(1)不断有新的HAB物种被发现或鉴定,HAB藻类系统分类也不断被更新;(2)鉴定、检测方法包括DNA分析、生物传感器研发应用等有较大改进;(3)藻类毒素生物合成通路的研究有一定进展;(4)在HAB生态学与海洋学研究持续发展的基础上,分子机制及现代组学发展较迅速。然而, HAB发生的关键环境诱因和生物学(特别是生化与分子)机制仍然不是很清楚,缺乏一个可用来预测HAB暴发的关键因子。笔者认为,一方面是因为HAB的复杂性、种类及生态系统的特异性,另一方面是研究缺乏系统性与完整性。因此未来有必要加强对每一个重要的HAB原因种开展系统、持续的研究,类似于生物科学领域里的模式种研究,并且有必要开展综合性的研究,如实验室单种培养、中尺度模拟及现场生态研究相结合,整合现代组学、传统生理生态学和现场实时连续观测等技术。     

Application of the first internal transcribed spacer(ITS-1) of ribosomal DNA as a molecular marker to population analysis in farrer''s scallop Chlamys farreri

Sequence variation of the first internal transcribed spacer of ribosomal DNA （ ITS - 1 ） was examined and its application to the study of genetic variation was explored in four populations of farter＇ s scallop Chlamys farreri. ITS - 1 fragments, with a length of about 300 bp,of 78 individuals collected from Dalian, Qingdao, Yantai in China and Korea respectively were amplified via PCR, cloned and sequenced. Intra-genomic variation was examined by sequencing several clones of single individuals. Alignment and polymorphism analysis detected 44 haplotypes and 50 polymorphic sites which consist of 30 substitutions and 20 indels, indicating a high level of polymorphisms. Sequence analysis also showed a very low level of intra-individual variation. All these features validated the feasibility of application of ITS - 1 fragment to population analysis. Polymorphism analysis showed that the Korea sample has the richest genetic variation, followed by Yantai and Qingdao samples. AMOVA （analysis of molecular variance） showed that the majority （96.26%） of genetic variation was distributed within populations and 3.74% resulted from among populations, but with P 〈 0.05 （ = 0.042）, indicating that the populations in this study have significant divergence. This output was basically concordant with the result arising from RAPD data and different from that from mitochondrial 16S rDNA sequence data. Discussion on this inconsistency was made accordingly.     

基于网络药理学-分子对接探索大黄牡丹汤治疗大肠癌的作用机制

目的：利用网络药理学-分子对接技术探索经方大黄牡丹汤治疗大肠癌的作用机制。方法：通过TCMSP、TCMID数据库获得大黄牡丹汤药物成分,通过PubChem、Swisstarget prediction数据库获得药物成分对应靶点,分析GSE113513芯片获得差异基因,随即获取大黄牡丹汤与大肠癌的共同靶点。利用R、Cytoscape、Autodock软件进行PPI、GO、KEGG、分子对接等分析。结果：获得大黄牡丹汤靶点561个,大肠癌差异基因1227个,共同靶点71个。共同靶点的通路富集分析显示主要与PPAR、p53等信号通路相关,Reactome机制分析显示大黄牡丹汤治疗大肠癌主要通过影响信号转导、免疫系统、疾病等产生作用,分子对接结果显示大肠癌核心靶点与大黄牡丹汤主要成分亲和力较好,能够有效自由结合。结论：经方大黄牡丹汤可通过多层次、多途径、多靶点发挥对大肠癌的治疗作用。     

Researches on the Internal Molecular Weight Uniformity of Chitosan Biomaterials

Uniform molecular weight(Mw)chitosan(CS)is highly demanded in medical biomaterial industry.This present article described heterogeneous degradation of CS in aqueous HCl/ethanol solution,in which progress uniform Mw CS was successfully prepared.The Mw distribution of CS was measured by gel permeation chromatography(GPC)analysis.Moreover,the structure and properties of degraded CS were characterized by Fourier transform infrared spectroscopy(FT-IR),nuclear magnetic resonance spectroscopy(^1H NMR),X-ray diffraction(XRD)and thermogravimetric(TG)analysis.In addition,the biocompatibility of degraded CS was also assessed by hemolysis rate(HR)measurement.The Mw of CS dramatically decreased from 246 KDa to 76 k Da at the initial 30 min,and stabilized at 18 kDa after 24 h.GPC analysis results showed that the degraded CS molecular become homogenization.FT-IR and 1 H NMR analysis confirmed the basic structure of CS molecular backbone was not destroyed during this progress.Besides,the water solubility of CS was not significantly influenced by this reaction.Moreover,the XRD analysis revealed that crystallinity of degraded CS increased from 70.32% to 99.25%with time.The TG analysis showed improved thermal stability of degraded CS.HR measurement demonstrated the degraded CS possessed excellent biocompatibility.This simple and efficient heterogeneous degradation would open up a new route to produce uniform Mw CS.