凡纳滨对虾(Litopenaeus vannamei)体重、存活性状的遗传参数和基因型与环境互作效应

利用7个凡纳滨对虾(Litopenaeus vannamei)引进群体,通过双列杂交和巢式交配设计构建家系,建立育种基础群体,估计体重、存活性状的遗传参数和基因型与环境互作效应(genotype by environment interactions,G×E)。结果表明,凡纳滨对虾基础群体体重和存活性状的遗传力估计值范围分别在(0.19±0.09)—(0.43±0.09),(0.27±0.04)—(0.45±0.06),均属于中高遗传力水平,并且统计检验显著(P<0.05)。Z-score检验表明,体重和存活性状遗传力估计值在河北黄骅(HBHH)和青岛鳌山(QBAS)两个测试场间差异均不显著。体重和存活性状的表型和遗传相关系数分别为0.007和0.008,表现为低度线性负相关。对于体重和存活性状,HBHH和QBAS场间的遗传相关分别为0.83±0.04和0.40±0.11。体重性状的G×E效应不显著(K<0.5),但存活性状存在显著的G×E效应(K>0.5)。上述结果显示,凡纳滨对虾基础群体体重和存活性状的遗传变异丰富,多代选择可获得较大的遗传进展。     

Optimal design of two-dimensional wings in ground effect using multi-objective genetic algorithm

The shape optimization of the 2-dimensional wing in ground effect (WIG) has been performed by the integration of CFD (computational fluid dynamics) and MOGA (multi-objective genetic algorithm). Because of the trade-off between the aerodynamic forces and the height stability, it is difficult to satisfy the design requirements of efficiency and stability at the same time. In this study, the lift coefficient, the lift-drag ratio and the static height stability are chosen as the objective functions to obtain the optimal wing profiles of a WIG craft. An NACA0015 airfoil is used for the baseline model; the aerodynamic characteristics of the base model are compared with that of the optimal solutions. The profile of the airfoil is constructed by four Bezier curves with fourteen control points resulting in the eighteen coordinates, which are adopted as the design variables. The optimal solutions of the multi-objective optimization are not unique but a set of the non-dominated optima: the Pareto frontiers or a Pareto set. As the results of the multi-objective optimization, the forty Pareto optima, which include high-lift, high-efficiency, and more stable airfoils on the edge of the 3-dimensional objective space, are obtained at thirty evolutions of the generation.     

波纹唇鱼mtDNA D-loop 序列变异分析

为研究波纹唇鱼(Cheilinus undulatus)线粒体D-loop 序列遗传多样性, 作者采用聚合酶链式反应和克隆技术对海波纹唇鱼群体(n=25)的mtDNA D-loop 序列进行克隆和测序, 获得长度大约为1 400 bp的产物。用ClustalX 软件进行排序比较, 将结果导入MEGA5.0, 结果显示出在这25 尾个体中, 共检测出66 个变异位点, 包括0 个碱基缺失, 4 个碱基插入, 59 转换位点, 2 颠换位点及1 个转换和颠换同时存在的位点。并用MEGA5.0 软件构建该群25 尾个体的NJ 和UPGMA 系统树。由DNASP 软件计算出该波纹唇鱼群体的多态位点数(S)为62, 核苷酸多样性(P_i)为0.00606, 平均核苷酸差异数为6.907。结果表明波纹唇鱼群体的mtDNA-loop 基因个体差异程度不明显。     

洞庭湖水系五强溪水库光泽黄颡鱼(Pelteobagrus nitidus)遗传多样性的AFLP分析

为了了解沅水五强溪大坝阻隔对光泽黄颡鱼可能造成的遗传多样性影响,采用AFLP分子标记技术,对沅水五强溪水库库区和沅水下游两个光泽黄颡鱼野生群体进行了遗传多样性分析。9对选择性引物在两个光泽黄颡鱼群体中,共扩增出1243个位点,多态位点1091个,多态位点比率为87.77%。其中库区和沅水下游群体多态位点比率分别为85.41%、83.25%,观测等位基因数分别为1.854±0.592、1.803±0.622,有效等位基因数分别为1.597±0.381、1.574±0.377,Nei’s多样性指数分别为0.220±0.211、0.207±0.195,Shannon’s信息指数分别为0.330±0.305、0.302±0.338;两个群体内的平均遗传距离分别为0.124±0.072、0.119±0.057,群体间的平均遗传距离为0.127±0.100。两个群体的遗传参数比较不存在显著差异(P0.05)。聚类分析显示,UPGMA系统树没有依据群体而形成明显的两大分支。以上结果表明,五强溪水库库区和沅水下游两个光泽黄颡鱼群体的遗传多样性丰富,光泽黄颡鱼种群遗传结构对水库大坝阻隔的响应不明显。     

Genetic variation of the small yellow croaker (Larimichthys polyactis) inferred from mitochondrial DNA provides novel insight into the fluctuation of resources

The small yellow croaker (Larimichthys polyactis) belongs to the family Sciaenidae, which is an offshore warm fish species and widely distributed in the western Pacific. In this study, the variation of genetic diversity and genetic differentiation among L. polyactis populations was analyzed by mitochondrial DNA control region. A total of 110 polymorphic sites were checked, which defined 134 haplotypes. High level of haplotype diversity (h=0.993±0.002) was detected in the examined range. Population genetic structure analyse (analysis of molecular variance, F_st) showed there were high gene flow among L. polyactis populations. The result showed that there were relatively high genetic diversity and low genetic differentiation among the Yellow Sea and the East China Sea populations, which can be attributed to diverse habitats, wide distribution range and high mutation rate of control region. Using phylogenetic methods, coalescent analyses (neutrality tests, mismatch distribution analysis, Bayesian skyline analyses) and molecular dating interpreted in conjunction with paleoclimatic and physiographic evidence, we inferred that the genetic make-up of extant populations of L. polyactis was shaped by Pleistocene environmental impacts on the historical demography of this species. Besides, relatively constant genetic diversity and larger effective population size were detected in recent L. polyactis population. The result showed that the fishing policy certainly, such as the summer closed fishing, played a role in protecting resources of L. polyactis. This study can offer a wealth of biological novelties which indicates genetic structure of L. polyactis population and provides the foundation for resources protection and policy setting.     

Separation and relationship of ten marine scuticociliates (Protozoa, Ciliophora) using RAPD fingerprinting method

On the basis of the random amplified polymorphic DNA-fingerprinting (RAPD) method, 10 morphospecies of scuticociliates from 7 genera, including 15 clones of 13 strains, Uronema marinum, Uronema cf marinum, Parauronema virginianum, P. longum, Metanophrys similis, M. sinensis, Paralembus digitiformis, Mesanophrys carcini, Paranophrys magna and Cohnilernbus verrninus were analysed using 8 oligonucleotide primers. The genetic similarity among the clones of the same strain measured by a band-sharing index is 0.97～0.98,while 0.40-4).52 among strains. This value measured is 0.39～0.46 among congeners of the same genus, whereas 0.16～0.47 between different genera. A distance tree was constructed based on 8-primer analysis, in which the scuticociliates investigated were separated into two clusters: one consists of 2 genera, Uronema and Parauronema, and the other was composed of five, Metanophrys, Mestmophrys,Paranophrys, Paralembus and Cohnilembus. It is demonstrated also that the morphospecies Parauronema virginianurn may be a species-complex, i. e., it contains different genospecies.     

黄海南部小黄鱼群体遗传多样性研究

以黄海南部吕泗渔场的小黄鱼（Pseudosciaena polyactis）群体为研究对象,采用ISSR技术对其遗传多样性进行分析。在使用的99个引物中,有10个引物可扩增出清晰稳定的条带,共计64条,分子质量在300-3000bp。其中多态性片段42条,多态性片段比例为65．63％,个体间相似性系数0．6667-43．8764,平均为0．7813,个体间平均遗传差异为0．2187。Shannon多样性指数12．0832,多样性值0．1888。表明黄海南部小黄鱼群体保持较高的遗传多样性,具有较大的变异潜力。提出应采取有效管理保护措施,以维持小黄鱼群体的遗传多样性水平,使该渔业资源得到合理利用。     

Molecular ecological study of <Emphasis Type="Italic">Siganus spinus</Emphasis> and <Emphasis Type="Italic">S. guttatus</Emphasis> from Okinawan waters based on mitochondrial DNA control region sequences

The mitochondrial DNA (mtDNA) control region was sequenced to examine the genetic variability and gene flow of juvenile Siganus spinus and S. guttatus. In total, 461 nucleotide sequences were obtained from 69 specimens of juvenile S. spinus from Okinawa Island and Ishigaki Island, in which 17 variable sites and 22 haplotypes were identified. Haplotype diversity (h) was high (0.9244 in Okinawa and 0.8984 in Ishigaki), whereas nucleotide diversity (π) was low (0.0063 in Okinawa and 0.0059 in Ishigaki). The two populations were not genetically distinct. Siganus guttatus, which do not form large schools at recruitment, in contrast S. spinus, were also analyzed by studying 152 individuals collected off Okinawa Island, Miyako Island, and Ishigaki Island. Of 476 nucleotide sequences, 50 were variable, and 42 haplotypes were identified. Genetic variability values were high (h = 0.8766 and π = 0.0151 in Okinawa; h = 0.9640 and π = 0.0192 in Miyako; h = 0.9161 and π = 0.0199 in Ishigaki). The Okinawa population was genetically isolated from the Miyako and Ishigaki populations. As a result, genetic diversity was high for each of these siganid populations despite their being target species for fisheries; however, the degree of inter-population gene flow was higher for S. spinus than S. guttatus, suggesting that these species exhibit different dispersal strategies.