基于微卫星(SSR)分子标记的中国对虾渤海湾增殖亲虾群体及回捕群体的遗传多样性分析

Eight microsatellite markers were used to analyze genetic diversity, level of inbreeding, and effective population size of spawner and recaptured populations of Chinese shrimp(Fenneropenaeus chinensis) during stock enhancement in the Bohai Bay in 2013. A total of 254 and 238 alleles were identified in the spawner and recaptured populations, respectively, and the numbers of alleles(N_a) were 8–63 and 6–60, respectively. The numbers of effective alleles(N_e) were 2.52–21.60 and 2.67–20.72, respectively. The polymorphism information content ranged from 0.529 to 0.952. The observed heterozygosity(H_o) values(0.638–0.910 and 0.712–0.927) were lower than the expected heterozygosity(H_e) values(0.603–0.954 and 0.625–0.952), which indicated that the two populations possessed a rich genetic diversity. In 16 tests(2 populations×8 loci), 13 tests deviated from the HardyWeinberg equilibrium. F_(is) values were positive at seven loci and the inbreeding coefficients(F) of the two populations estimated by trio ML were 13.234% and 11.603%, suggesting that there was a relatively high degree of inbreeding. A certain level of inbreeding depression had occurred in the Chinese shrimp population. F_(st) values ranged from 0 to 0.059, with a mean of 0.028, displaying a low level of genetic differentiation in the two populations. Effective population sizes(3 060.2 and 3 842.8) were higher than the minimum number suggested for retaining the evolutionary potential to adapt to new environmental conditions. For enhancement activity in 2014,the ideal number of captured shrimp spawners should have ranged from 7 686 to 19 214 to maintain genetic diversity and effective population size. Further strategies to adjust the balance of economic cost, fishing effort and ideal number of shrimp spawners to maintain a satisfactory effective population size for ensuring the sustainability of Chinese shrimp are proposed.     

桑沟湾沉积碳库年汇入速率的长期变化及其区域性差异

对取自桑沟湾北西南三根柱样近200 a碳来源及埋藏通量的解析,分析了湾内不同站位各形态碳的差异性,进而对全湾碳埋藏进行了估算。湾内环流、贝藻养殖等造成湾内不同区域碳埋藏的差异;桑沟湾总碳（TC）平均量1.79%,有机碳（TOC）平均量0.54%,无机碳（TIC）平均量1.25%,TOC含量相对较小,为海陆混合来源,以陆源有机碳（C_t）为主,大规模人工养殖后,海源有机碳（C_a）有明显增加的趋势。桑沟湾碳埋藏通量平均为228.9 g/（m2·a）,以无机碳为主要埋藏形式（约占70%）,高的沉积速率及生物残骸沉降使桑沟湾养殖区碳的来源及埋藏区别于其他陆架海域。     

Solving the linearized forward-speed radiation problem using a high-order finite difference method on overlapping grids

The linearized potential flow approximation for the forward speed radiation problem is solved in the time domain using a high-order finite difference method. The finite-difference discretization is developed on overlapping, curvilinear body-fitted grids. To ensure numerical stability, the convective derivatives in the free-surface boundary conditions are treated using an upwind-biased stencil. Instead of solving for the radiation impulse response functions, a pseudo-impulsive Gaussian type displacement is employed in order to tailor the frequency-content to the discrete spatial resolution. Frequency-domain results are then obtained from a Fourier transform of the force and motion signals. In order to make a robust Fourier transform, and capture the response around the critical frequency, the tail of the force signal is asymptotically extrapolated assuming a linear decay rate. Fourth-order convergence of the calculations on simple geometries is demonstrated, along with a nearly linear scaling of the solution effort with increasing grid resolution. The code is validated by comparison with analytical and semi-analytical solutions using submerged and floating closed-form geometries. Calculations are also made for a modern bulk carrier, and good agreement is found with experimental measurements.     

AFLP analysis revealed differences in genetic diversity of four natural populations of Manila clam(Ruditapes philippinarum) in China

1 IntroductionManila clam (Ruditapes philippinarum) is aworldwide distributed species. In China, it is foundfrom the northern to southern seashores (Wang etal., 1993; Zhuang, 2001). This species is eura-line with the salinity tolerance ranging from 20 to4…     

米氏凯伦藻细胞表面膜蛋白质组及其对温度变化的响应研究

米氏凯伦藻(Karenia mikimotoi)近年在我国福建、浙江和广东沿海经常形成赤潮,其赤潮不仅影响到海洋生态系统的稳定,也严重威胁到水产养殖以及人类生命健康安全。本论文以米氏凯伦藻为研究对象,建立了米氏凯伦藻细胞表面膜蛋白质荧光标记技术和细胞膜蛋白质提取方法,运用荧光差异凝胶电泳技术(2-DDIGE)对膜蛋白质进行了分析,并研究了米氏凯伦藻的膜蛋白质组及其对环境温度变动的响应。实验共鉴定到44个细胞表面膜蛋白,其中有效注释27个,主要为转运蛋白、HSP70蛋白家族和捕光蛋白等。米氏凯伦藻在20°C条件下的细胞生长和光合作用要明显好于16°C和12°C,但16°C和12°C条件下的差别不大,表明低温限制了米氏凯伦藻的生长。当米氏凯伦藻从12°C快速转移至16°C和20°C时,藻细胞密度和光合作用效率短时间迅速降低,但细胞很快即适应温度变化。细胞膜上的转运蛋白和光合作用蛋白在其适应温度变化中起着重要作用。     

大菱鲆体重和主要体型比率性状的遗传动态分析

The objective of this study was to estimate genetic parameters of body width(BW)to body length(BL)ratio(BW/BL)and of body weight traits(BWT)in turbot,and to elucidate the genetic mechanism of the two traits during ontogeny by dynamic genetic analysis.From 3 to 27 months,BW,BL and BWT of each communally stocked fish were measured every 3 months.The BW/BL ratio was measured at different sampling ages.A twotrait animal model was used for genetic evaluation of traits.The results showed that the heritability values of BW/BL ratio ranged from 0.2168 to 0.3148,corresponding to moderate heritability.The BWT heritability values ranged from 0.2702 to 0.3479 corresponding to moderate heritability.The heritability of BW/BL ratio was lower than that of BWT,except at 3 months of age.Genetic correlation between BW/BL ratio and BWT decreased throughout the measurement period.Genetic correlations were higher than the phenotypic correlations.The current results for estimating genetic parameters demonstrate that the BW/BL ratio could be used as a phenotypic marker of fast-growing turbot,and the BW/BL ratio and BWT could be improved simultaneously through selective breeding.     

中国近海外来囊藻(Colpomenia peregrina)种群遗传多样性研究

外来囊藻(Colpomeniaperegrina)是一种在潮间带分布广泛的褐藻,它能附着在牡蛎壳上进行跨海区扩散,因而是研究生物多样性变动和生物地理格局形成的良好模型。外来囊藻在中国沿海虽有分布,但关于其种群遗传多样性和分化研究的报道尚为空白。本研究采集了中国近海13个外来囊藻种群样本。通过扩增301条线粒体cox3序列,发现了26个单倍型;通过重建单倍型网络图和基于最大似然法与贝叶斯法重建系统进化树,发现外来囊藻种内遗传多样性较高, 13个种群划分为3个遗传世系,其中浙江南麂列岛的7个种群组成遗传世系A,辽宁和山东的样本则分化为遗传世系B和C。中国近海外来囊藻的这种种群遗传结构可能源于更新世末次盛冰期黄渤海、东海边缘海的环境变化和海平面的大幅下降。遗传世系A具有的较高单倍型多样性,其原因可能是南麂列岛独特的地理位置和潮间带环境的共同作用。     

洞庭湖水系五强溪水库光泽黄颡鱼(Pelteobagrus nitidus)遗传多样性的AFLP分析

为了了解沅水五强溪大坝阻隔对光泽黄颡鱼可能造成的遗传多样性影响,采用AFLP分子标记技术,对沅水五强溪水库库区和沅水下游两个光泽黄颡鱼野生群体进行了遗传多样性分析。9对选择性引物在两个光泽黄颡鱼群体中,共扩增出1243个位点,多态位点1091个,多态位点比率为87.77%。其中库区和沅水下游群体多态位点比率分别为85.41%、83.25%,观测等位基因数分别为1.854±0.592、1.803±0.622,有效等位基因数分别为1.597±0.381、1.574±0.377,Nei’s多样性指数分别为0.220±0.211、0.207±0.195,Shannon’s信息指数分别为0.330±0.305、0.302±0.338;两个群体内的平均遗传距离分别为0.124±0.072、0.119±0.057,群体间的平均遗传距离为0.127±0.100。两个群体的遗传参数比较不存在显著差异(P0.05)。聚类分析显示,UPGMA系统树没有依据群体而形成明显的两大分支。以上结果表明,五强溪水库库区和沅水下游两个光泽黄颡鱼群体的遗传多样性丰富,光泽黄颡鱼种群遗传结构对水库大坝阻隔的响应不明显。     

基于连续帧间差分的抛弃式探头三维下沉运动处理方法研究

抛弃式探头由无人机装载,能够在较远目标区域和危险海域开展海洋水文环境剖面参数的测量。通过安装不同传感器,可以实现对温度、盐度的剖面测量,其深度的测量采用数学方法计算得到。针对双摄像机水箱实验获得的5个不同攻角实验结果,分析了常用的运动目标的检测方法,最终选择基于连续帧间差分法,确定探头的三维坐标位置,进而得到探头下沉运动的三维运动轨迹和速度曲线等信息。探头从水面释放后攻角在下沉过程中不断调整,改变运动姿态,同时伴随自身的旋转,抵消水平方向阻力作用,初始攻角产生的深度测量误差主要体现在加速过程,探头达到匀速运动后测量误差不变,在不考虑横流的情况下,探头最后以匀速垂直下落运动。     

水文重力效应改正中一维地下水模拟算法的对比

基于一维地下水渗透方程详细推导其有限差分解算过程,引入不同于显式差分的隐式差分和中心差分格式,对比分析不同差分格式对地下水模拟结果及其相应地下水重力效应的影响,并对其中的层间参数取值和非线性方程的线性化问题进行探讨。结果表明,在日本Isawa扇形地区超导台站,不同层间参数加权公式能够引起最大约0.15 μGal的重力效应差异,影响在1.9%以内;不同差分格式和线性化方法组合形式能够引起最大约0.12 μGal的重力效应差异,影响在1.5%以内。