抑制尖刀镰孢菌(Fusarium oxysporum)南极细菌的筛选及Psychrobacter sp.P4-11-07-1的生长特性

以植物病原真菌尖刀镰孢菌(Fusarium oxysporum)为指示菌,采用平板扩散法从实验室极地微生物资源库中筛选到12株具有明显抑菌作用的活性菌株。分子鉴定与系统发育分析表明,7株活性菌株属于假交替单胞菌(Pseudoalteromonas)、3株属于嗜冷杆菌(Psychrobacter)、1株属于假单胞菌(Pseudomonas)、1株属于伦黑墨氏菌(Rheinheimera)。抑菌谱测定结果表明,不同活性菌株的抑菌谱也有所不同,12株活性菌株对尖刀镰孢菌、辣椒疫霉(Phytophthora copsici)、大丽轮枝菌(Verticillium dahliae)、瓜亡革菌(Thanatephorus cucumeris)均有一定的抑制作用,而对葡枝根霉(Rhizopus stolonifer)均没有抑制作用;除菌株1-Z11,1-Z18,4-Z11,4-Z18,IS-010-07-1,P3-11-10-1,Z18-3外,其余5株菌株均对水稻纹枯病菌(Rhizoctonia solani)有抑制作用。对一株具有较强抑菌活性的菌株Psychrobacter sp.P4-11-07-1生长条件的研究表明,当培养温度为5～30℃,培养基盐度为0～45,初始pH值为5.0～11.0时,菌株P4-11-07-1均可生长并产生抑菌活性物质,对应抑菌活性最高的培养条件分别是:培养温度为25℃,培养基盐度为0,初始pH为7.0。     

夏季北冰洋楚科奇海微微型、微型浮游植物和细菌的丰度分布特征及其与水团的关系

本文利用2008年我国第三次北极科学考察的机会,分析了夏季楚科奇海微微型、微型浮游植物和细菌丰度的分布特征,并探讨了它们与楚科奇海水团之间的关系。结果表明：与北冰洋的其它海域相比,楚科奇海的微型浮游植物丰度相对较高（0.03~10.23×103 cells/mL）,微微型浮游植物则大致相同（0.01~2.21×103 cells/mL）,而浮游细菌丰度明显较高（0.21~9.61×106 cells/mL）。白令海陆架水与海冰融化混合水和阿纳德尔水浮游植物群落结构不同,夏季随着太平洋水入流水对楚科奇海的日益影响,其水体本身的群落结构可能被外来群落替代。     

青藏高原湖泊沉积物硫酸盐还原菌种群分布

采用聚合酶链式反应(PCR,Polymerase Chain Reaction)、变性梯度凝胶电泳(DGGE,Denaturing Gra-dient Gel Electrophoresis)与实时荧光定量聚合酶链式反应(Q-PCR,Quantitative PCR)相结合的综合分析技术,研究了青藏高原洱海、青海湖、尕海1、尕海2、小柴旦湖沉积物硫酸盐还原菌多样性及丰度。研究结果显示,5个盐湖沉积物中dsrB(编码亚硫酸还原酶β亚基,为硫酸盐还原菌所共有)基因的丰度为每克沉积物1.71×108～1.55×109拷贝,与盐度无明显相关性;所获得的dsrB基因序列分属于3个科:Desulfobacter-aceae,Desulfobulbaceae和Peptococcaceae。其中,Desulfobacteraceae科是主要类群。硫酸盐还原菌多样性(DGGE结果)与盐度呈现出负相关性。故在所研究的盐湖中,盐度可能不是影响硫酸盐还原菌种群分布的唯一因素,可能还受其它未知环境因素的影响,有待于进一步研究。     

几种矿物粉尘对硅酸盐细菌S35生长的影响

通过对6种矿物粉尘主要化学成分的分析,以及它们与硅酸盐细菌S35的相互作用后各培养液pH值、葡萄糖(GLU)、电解质以及Mn、Si、Fe等的变化的测试,比较矿物粉尘的化学成分和物理性状对试验目标菌生长的影响。利用SEM分析对粉尘与细菌的作用过程中细菌形态和界面作用情况进行了研究。结果表明,所选各种矿物粉尘对细菌生长情况的影响存在差异,矿物粉尘对硅酸盐细菌生长的影响可能与粉尘的化学成分有关。     

Analysis of cultivable aerobic bacterial community composition and screening for facultative sulfate-reducing bacteria in marine corrosive steel

Anaerobic, aerobic, and facultative bacteria are all present in corrosive environments. However, as previous studies to address corrosion in the marine environment have largely focused on anaerobic bacteria, limited attention has been paid to the composition and function of aerobic and facultative bacteria in this process. For analysis in this study, ten samples were collected from rust layers on steel plates that had been immersed in seawater for diff erent periods (i.e., six months and eight years) at Sanya and Xiamen, China. The cultivable aerobic bacterial community structure as well as the number of sulfate-reducing bacteria (SRB) were analyzed in both cases, while the proportion of facultative SRB among the isolated aerobic bacteria in each sample was also evaluated using a novel approach. Bacterial abundance results show that the proportions are related to sea location and immersion time;abundances of culturable aerobic bacteria (CAB) and SRB from Sanya were greater in most corrosion samples than those from Xiamen, and abundances of both bacterial groups were greater in samples immersed for six months than for eight years. A total of 213 isolates were obtained from all samples in terms of CAB community composition, and a phylogenetic analysis revealed that the taxa comprised four phyla and 31 genera. Bacterial species composition is related to marine location;the results show that Firmicutes and Proteobacteria were the dominant phyla, accounting for 98.13% of the total, while Bacillus and Vibrio were the dominant genera, accounting for 53.06% of the total. An additional sixfacultative SRB strains were also screened from the isolates obtained and were found to encompass the genus Vibrio (four strains), Staphylococcus (one strain), and Photobacterium (one strain). It is noteworthy that mentions of Photobacterium species have so far been absent from the literature, both in terms of its membership of the SRB group and its relationship to corrosion.     

Methane flux dynamics in relation to methanogenic and methanotrophic populations in the soil of Indian Sundarban mangroves

The dynamics of methane (CH₄) flux in relation to populations of methanogenic and methanotrophic bacteria was studied under the different biophysical conditions of the Indian Sundarban mangrove ecosystem. Soil depth profile analysis (up to 60 cm) in the lower littoral zone (LLZ) revealed that a methanogenic population of 6.45 ± 0.19 × 10⁴ cells/g dry weight (dry wt) of soil accounted for a CH₄ production rate of 6.23 ± 3.53 × 10³ µmol m^?2 day^?1, whereas in the surface soil, a methanogenic population of 3.34 ± 0.37 × 10⁴ cells/g dry wt of soil accounted for a CH₄ production rate of 31.6 ± 0.57 µmol m^?2 day^?1. The CH₄ oxidation rate at 60 cm depth in the LLZ was 24.42 ± 1.28 µmol m^?2 day^?1, with an average methanotrophic population of 1.33 ± 0.43 × 10⁴ cells/g dry wt of soil, whereas in the surface soil, the oxidation rate and average population were 3.38 ± 1.43 × 10³ µmol m^?2 day^?1 and 12.80 ± 2.54 × 10⁴ cells/g dry wt of soil, respectively. A similar soil profile in terms of CH₄ dynamics and the populations of methanogenic and methanotrophic bacteria was found in the mid‐littoral and upper littoral zones of the studied area. The results demonstrate that most of the produced CH₄ (approximately 60%) was oxidized by methanotrophic bacteria present in the soil, thus revealing their principal role in regulating the CH₄ flux from this unique ecosystem.     

亮氨酸与碳转换系数在环境梯度下的变化特征

Bacterial production is one of the key parameters to evaluate bacterial role in ocean carbon fluxes.Estimation of bacterial production requires the leucine-to-carbon conversion factors that change widely across environments.However,empirical leucine-to-carbon conversion factors(e CFs) are seldom determined in situ because of time consuming and little is known on regulating factors for the e CFs.During May 2015 to January 2016,fourteen dilution experiments were conducted,from the Zhujiang(Pearl River) Estuary to the coast of the northern South China Sea,to determine spatiotemporal variability in the e CFs and its potential controlling factors along an environmental gradient.The e CFs showed clear spatial variations with the highest(1.27–1.69(kg C)/(mol Leu)) in low salinity waters(salinity15),intermediate(1.03–1.25(kg C)/(mol Leu)) in moderate salinity(salinity of 15–25),and the lowest(0.48–0.85(kg C)/(mol Leu)) in high salinity waters(salinity25).Substrate availability was responsible for spatial variability in the e CFs.In the pristine coastal waters,low e CFs was related to substrate limitation and leucine incorporated was respired to maximize the survival rather than bacterial production.Hence,the e CFs measurement was needed for estimating bacterial production accurately in various marine environments.     

海洋沉积物氨氧化菌群落结构的测序分析

本文以氨氧化细菌(ammonia-oxidizing bacteria,AOB)特征基因氨单加氧酶(ammonia monooxygenase,AMO)α亚基基因(amoA)为目标基因(～491bp),分别采用克隆文库、454高通量测序和illumina测序技术对其群落结构进行了比较研究。结果表明, 454高通量测序和illumina测序技术得到的菌群多样性及丰富度均高于克隆文库技术。在菌群组成方面,虽然3种测序技术检测到的优势类群均为亚硝化螺菌,但在菌群丰度方面存在差异。3种测序技术中,克隆文库技术在很大程度上可能高估物种丰度,且对部分低丰度类群的检测能力有限;illumina单端测序由于其测序片段较短,可能存在物种注释错误、不能准确区分各物种间序列差异等问题;比较而言, 454高通量测序技术能较为全面和准确地反映海洋沉积物中AOB的菌群结构特征。     

实验室海月水母大规模解体的初步研究

本实验针对两次突发的饲养海月水母(Aureliaaurita)大规模烂洞解体状况,通过对病灶处进行细菌培养,从其中每次发病水母中均各分离到2种优势病原菌菌株,利用PCR扩增和DNA测序技术,获得优势菌株16SrRNA基因序列,通过生物信息比对分析显示,导致两次海月水母发病的病原菌菌株分别为2种嗜冷杆菌(Psychrobacter sp.)和2种弧菌(Vibrio splendidusVibrio neptunius)。通过利用福林酚法进行此四种优势菌株的细菌发酵培养液蛋白酶活性的测定,结果显示,此4种细菌均具有较强的蛋白酶活性。根据实验结果推测,分离所得的2种嗜冷杆菌菌株(Paa1Paa2)和2种弧菌菌株(Vaa1Vaa2)作为此次发病海月水母的病原菌,有可能均是通过分泌胞外蛋白酶侵蚀水母伞体,从而导致伞体烂洞解体。通过本次实验分析,推测自然条件下水母暴发后的快速消亡是由水母自身免疫下降与细菌侵染的共同作用导致。     

温度对微型鞭毛虫摄食细菌的影响

为研究温度对微型鞭毛虫（Nanoflagellates,NF）摄食细菌的影响,于广西近岸海区采集NF自然群落,置于实验室不同温度下（14℃、22℃、28℃）培养9天,观察细菌和NF的丰度变化。并以荧光细菌标记法研究不同温度下异养微型鞭毛虫（Hetertrophic Nanoflagellates,HNF）和含色素微型鞭毛虫（Pigmented Nanoflagellates,PNF）对细菌的摄食率,计算不同类型NF的群落摄食率。此外,研究还比较了不同粒径PNF （<3 μm和3~10 μm）对细菌的摄食。结果表明,不同类型的NF对细菌的摄食率由大到小为:3~10 μm PNF、HNF、小于3 μm PNF。较之PNF,HNF的摄食受温度影响较小。PNF的摄食率在22℃最大。而且,不同大小PNF的摄食对温度的响应有所不同。升温可以提高3~10 μm PNF的摄食率,但会抑制小于3 μm PNF的摄食。而降温抑制3~10 μm PNF的摄食,但降温对小于3 μm PNF摄食的抑制作用比升温小。但无论是3~10 μm PNF还是小于3 μm PNF,升温均会降低其丰度。而由于丰度减小对群落摄食率的影响更大,因此,升温降低PNF的群落摄食率。