Acyclic isoprenoid biomarkers and evolution of biosynthetic pathways in green microalgae of the genus Botryococcus

Acyclic isoprenoids were among the earliest lipids on Earth and today > 30,000 isoprenoid-derived compounds are known, testifying to the remarkable diversification in isoprenoid biosynthetic pathways over time. Many of the isoprenoids have proven to be useful biomarkers in geochemical studies and evidence from sedimentary studies has the potential to provide a timeline for the evolution of different types of isoprenoid biosynthesis. A single green microalgal species termed Botryococcus braunii has been recognised as a major contributor of organic matter to sediments as old as the Precambrian. Modern studies of the taxonomy of B. braunii using molecular biology techniques have shown that the major clades identified from 18S rRNA gene sequences correspond to races A, B, L and S, which are defined on the basis of their hydrocarbon composition. The biosynthetic pathways by which C₃₀–C₃₇ botryococcenes are produced by the B race have now been shown to be due to a duplication of the squalene synthase gene, followed by subsequent changes to the genes, such that one pathway leads to the production of the C₃₀ botryococcene and the other to squalene. Both products are then methylated to produce botryococcenes and methylated squalenes having higher carbon numbers. The mode of biosynthesis of lycopadiene in race L is unclear, but may involve coupling of two C₂₀ phytyl diphosphates. From an examination of the geological record of botryococcenes and lycopadiene it seems likely that these pathways probably evolved early in the Eocene (ca. 55 Ma) and thus are more recently evolved than the genes for highly branched isoprenoid (HBI) alkenes first produced by diatoms about 92 Ma ago. Botryococcane produced from botryococcenes and a monoaromatic hydrocarbon produced from lycopadiene-related lipids, presumably under anoxic conditions, show promise as age diagnostic biomarkers. In view of these results, it seems likely that the Botryococcus species recorded in sediments predating the Eocene lacked the ability to produce botryococcenes or lycopadiene, but nonetheless still contained polymeric non-isoprenoid alkyl chains in the form of an algaenan which on preservation gave rise to a multitude of organic rich rocks.     

The importance of sewage effluent discharge in the export of dissolved organic carbon from U.K. rivers

The flux of fluvial carbon from the terrestrial biosphere to the world's oceans is known to be an important component of the global carbon cycle, but within this pathway, the flux and return of carbon to the river network via sewage effluent has not been quantified. In this study, monitoring data from 2000 to 2016 for the dissolved organic carbon (DOC) concentration, biochemical oxygen demand, and chemical oxygen demand of the final effluent of sewage treatment works from across England were examined to assess the amount of DOC contributing to national‐scale fluvial fluxes of carbon. The study shows that the median concentration of DOC in final effluent was 9.4 compared with 4.8 mg C/L for all surface waters for the United Kingdom over the study period and that the DOC in final effluent significantly declined over the study period from 11.0 to 6.4 mg C/L. Rivers receiving sewage effluent showed a significant, on average 19%, increase in DOC concentration downstream of sewage discharges. At the scale of the United Kingdom, the flux of DOC in final effluent was 31 ktonnes C/year with a per capita export of 0.55 kg C/year and compared with an average annual flux of DOC from the United Kingdom of 859 ktonnes C/year, that is, only 3.6% of national‐scale flux. The lability of this DOC was limited, with only 7.4% loss of final effluent DOC concentration over in‐stream residence times of up to 5 days. The direct decline in DOC concentration from sewage treatment works was not large enough on its own to explain the declines observed in DOC concentration in U.K. rivers at their tidal limit.     

Subduction metamorphism of serpentinite‐hosted carbonates beyond antigorite‐serpentinite dehydration (Nevado‐Filábride Complex,Spain)

At sub‐arc depths, the release of carbon from subducting slab lithologies is mostly controlled by fluid released by devolatilization reactions such as dehydration of antigorite (Atg‐) serpentinite to prograde peridotite. Here we investigate carbonate–silicate rocks hosted in Atg‐serpentinite and prograde chlorite (Chl‐) harzburgite in the Milagrosa and Almirez ultramafic massifs of the palaeo‐subducted Nevado‐Filábride Complex (NFC, Betic Cordillera, S. Spain). These massifs provide a unique opportunity to study the stability of carbonate during subduction metamorphism at P–T conditions before and after the dehydration of Atg‐serpentinite in a warm subduction setting. In the Milagrosa massif, carbonate–silicate rocks occur as lenses of Ti‐clinohumite–diopside–calcite marbles, diopside–dolomite marbles and antigorite–diopside–dolomite rocks hosted in clinopyroxene‐bearing Atg‐serpentinite. In Almirez, carbonate–silicate rocks are hosted in Chl‐harzburgite and show a high‐grade assemblage composed of olivine, Ti‐clinohumite, diopside, chlorite, dolomite, calcite, Cr‐bearing magnetite, pentlandite and rare aragonite inclusions. These NFC carbonate–silicate rocks have variable CaO and CO₂ contents at nearly constant Mg/Si ratio and high Ni and Cr contents, indicating that their protoliths were variable mixtures of serpentine and Ca‐carbonate (i.e., ophicarbonates). Thermodynamic modelling shows that the carbonate–silicate rocks attained peak metamorphic conditions similar to those of their host serpentinite (Milagrosa massif; 550–600°C and 1.0–1.4 GPa) and Chl‐harzburgite (Almirez massif; 1.7–1.9 GPa and 680°C). Microstructures, mineral chemistry and phase relations indicate that the hybrid carbonate–silicate bulk rock compositions formed before prograde metamorphism, likely during seawater hydrothermal alteration, and subsequently underwent subduction metamorphism. In the CaO–MgO–SiO₂ ternary, these processes resulted in a compositional variability of NFC serpentinite‐hosted carbonate–silicate rocks along the serpentine‐calcite mixing trend, similar to that observed in serpentinite‐hosted carbonate‐rocks in other palaeo‐subducted metamorphic terranes. Thermodynamic modelling using classical models of binary H₂O–CO₂ fluids shows that the compositional variability along this binary determines the temperature of the main devolatilization reactions, the fluid composition and the mineral assemblages of reaction products during prograde subduction metamorphism. Thermodynamic modelling considering electrolytic fluids reveals that H₂O and molecular CO₂ are the main fluid species and charged carbon‐bearing species occur only in minor amounts in equilibrium with carbonate–silicate rocks in warm subduction settings. Consequently, accounting for electrolytic fluids at these conditions slightly increases the solubility of carbon in the fluids compared with predictions by classical binary H₂O–CO₂ fluids, but does not affect the topology of phase relations in serpentinite‐hosted carbonate‐rocks. Phase relations, mineral composition and assemblages of Milagrosa and Almirez (meta)‐serpentinite‐hosted carbonate–silicate rocks are consistent with local equilibrium between an infiltrating fluid and the bulk rock composition and indicate a limited role of infiltration‐driven decarbonation. Our study shows natural evidence for the preservation of carbonates in serpentinite‐hosted carbonate–silicate rocks beyond the Atg‐serpentinite breakdown at sub‐arc depths, demonstrating that carbon can be recycled into the deep mantle.     

Sources and variability of CO2 in a prealpine stream gravel bar

Gravel bars (GBs) contribute to carbon dioxide (CO₂) emissions from stream corridors, with CO₂ concentrations and emissions dependent on prevailing hydraulic, biochemical, and physicochemical conditions. We investigated CO₂ concentrations and fluxes across a GB in a prealpine stream over three different discharge‐temperature conditions. By combining field data with a reactive transport groundwater model, we were able to differentiate the most relevant hydrological and biogeochemical processes contributing to CO₂ dynamics. GB CO₂ concentrations showed significant spatial and temporal variability and were highest under the lowest flow and highest temperature conditions. Further, observed GB surface CO₂ evasion fluxes, measured CO₂ concentrations, and modelled aerobic respiration were highest at the tail of the GB over all conditions. Modelled CO₂ transport via streamwater downwelling contributed the largest fraction of the measured GB CO₂ concentrations (31% to 48%). This contribution increased its relative share at higher discharges as a result of a decrease in other sources. Also, it decreased from the GB head to tail across all discharge‐temperature conditions. Aerobic respiration accounted for 17% to 36% of measured surface CO₂ concentrations. Zoobenthic respiration was estimated to contribute between 4% and 8%, and direct groundwater CO₂ inputs 1% to 23%. Unexplained residuals accounted for 6% to 37% of the observed CO₂ concentrations at the GB surface. Overall, we highlight the dynamic role of subsurface aerobic respiration as a driver of spatial and temporal variability of CO₂ concentrations and evasion fluxes from a GB. As hydrological regimes in prealpine streams are predicted to change following climatic change, we propose that warming temperatures combined with extended periods of low flow will lead to increased CO₂ release via enhanced aerobic respiration in newly exposed GBs in prealpine stream corridors.     

Impact of the water salinity on the hydraulic conductivity of fen peat

Coastal peatlands represent an interface between marine and terrestrial ecosystems; their hydrology is affected by salt and fresh water inflow alike. Previous studies on bog peat have shown that pore water salinity can have an impact on the saturated hydraulic conductivity (K_s) of peat because of chemical pore dilation effects. In this study, we aimed at quantifying the impact of higher salinities (up to 3.5% NaCl) on K_s of fen peat. Two experiments employing a constant‐head upward‐flow permeameter and differing in measurement and salinity change duration were conducted. Additionally, a third experiment to determine the impact of water salinity on the release of dissolved organic carbon (DOC) of the studied peat type was carried out. The results show a decrease of K_s with time, which does not depend on the water salinity but is differently shaped for different peat types. We assume pore clogging due to a conglomerate of physical, chemical, and biological processes, which rather depend on water movement rate and time than on water salinity. However, an increased water salinity did increase the DOC release. We conclude that salinity‐dependent behaviour of K_s is a function of peat chemistry and that for some peat types, salinity may only affect the DOC release without having a pronounced impact on water flow.     

A new approach for measuring surface hydrological connectivity

The development of surface hydrological connectivity is a key determinant of flood magnitude in drylands. Thresholds in runoff response may be reached when isolated runoff-generating areas connect with each other to form continuous links to river channels, enabling these areas to contribute to flood hydrographs. Such threshold behaviour explains observed nonlinearities and scale dependencies of dryland rainfall–runoff relationships and complicates attempts at flood prediction. However, field methods for measuring the propensity of a surface to transmit water downslope are lacking, and conventional techniques of infiltration measurement are often inappropriate for use on non-agricultural drylands. Here, we argue for a reconceptualization of the dryland surface runoff process, suggesting that the downslope transfer of water should be considered alongside surface infiltration; that is, there is a need for the “aggregated” measurement of infiltration and overland flow hydraulics. Surface application of a set volume of water at a standardized rate generates runoff that travels downslope; the distance it travels downslope is determined by infiltration along the flow, integration of flow paths, and flow resistance. We demonstrate the potential of such a combined measurement system coupled with structure-from-motion photogrammetry to identify surface controls on runoff generation and transfer on dryland hillslopes, with vegetation, slope, surface stone cover, and surface roughness all having a significant effect. The measurement system has been used on slopes up to 37° compared with the flat surface typically required for infiltration methods. On average, the field workflow takes ~10–15 min, considerably quicker than rainfall simulation. A wider variety of surfaces can be sampled with relative ease, as the method is not restricted to stone and vegetation-free land. We argue that this aggregated measurement represents surface connectivity and dryland runoff response better than standard hydrological approaches and can be applied on a much greater variety of dryland surfaces.     

Di-nitrogen fixation in a eutrophic tropical bay

Di-nitrogen fixation, measured in situ by the acetylene reduction technique, was shown to be associated with regular summer blooms of Oscillatoria erythraea in Mazatlán bay, a eutrophic tropical embayment on the Pacific Coast of Mexico. The Oscillatoria population density and the rate of di-nitrogen fixation per cell were of similar magnitude to those observed by other workers in the oligotrophic Caribbean Sea. Since the non-nitrogen limited fraction (Oscillatoria) of the total population was generally less than 10% and the nutrient supply to the bay is relatively abundant, di-nitrogen fixation does not appear to play an important role in the eutrophication of the bay.     

BOOK REVIEWS

Books Reviewed in this article: Lob Trees in the Wilderness . Clifford and Isabel Ahlgren . Satellite Microwave Remote Sensing . T. D. Allan , ed. Sunbelt Cities: Politics and Growth Since World War II . Richard M. Bernard and Bradley R. Rice , eds. Legacy of Minneapolis: Preservation Amid Change . John R. Borchert , David Gebhard , David Lanegran , and Judith A. Martin . Bloomington, MN: Preparing a Historic Preservation Ordinance. Richard J. Roddewig . The Mountains of Northeastern Tasmania, A Study of Alpine Geomorphology . Nel Caine . Introductory Cartography . John Campbell . Englewood Cliffs, NJ: Changing Climate . Manual of Remote Sensing, Second Edition . 2 Vols. Robert N. Colwell , ed.-in-chief; David S. Simonett and John E. Estes , vol. eds. Remote Sensing in Meteorology, Oceanography and Hydrology . A. P. Cracknell , ed. Multidimensional Scaling . Mark L. Davison . Environmental Karst . Percy H. Dougherty , ed. The Urban Environment . Ian Douglas . Geomorphology of Europe . Clifford Embleton , ed. An Introduction to South Asia . B. H. Farmer . Great Geological Controversies . A. Hallam . Hazardous Waste Management: In Whose Backyard? Michalann Harthill , ed. Energy for Subsistence . Margaret Haswell . Perspective on Ratzel's Political Geography . James M. Hunter . Economic Deposits and their Tectonic Setting . Charles S. Hutchison . Energy Risk Assessment . Herbert Inhaber . Discovering the Vernacular Landscape . John Brinckerhoff Jackson . Climate and Energy Systems: A Review of Their Interactions . Jill Jäger . Dilemmas in Regional Policy . Antoni Kuklinski and J. G. Lambooy , eds. California Farmland: A History of Large Agricultural Landholdings . Ellen Liebman . The Spatial Organization of New Land Settlement in Latin America . Jacob O. Maos . Dark Continent: Africa as Seen by Americans . Michael McCarthy . Westport, CT: Climatology: An Introduction . John E. Oliver and John J. Hidore . Columbus, OH: The Geography of Warfare . Patrick O'Sullivan and Jesse W. Miller . The Expanding City. Essays in Honour of Professor Jean Gottmann . John Patten , ed. Scotland's Environment During the Last 30,000 Years . Robert J. Price . Integrated Urban Models . S. H. Putman . Development and the Environmental Crisis: Red or Green Alternatives? Michael Redclift .     

EVOLUTIONARY CHARACTERISTICS OF LAKES AND PALAEOCLIMATIC UNDULATION IN THE Q AID AM BASIN,CHINA

The Qaidam Basin is. a tectonically controlled depression at 2700 m altitude on the northern margin of the Tibet Plateau. A succession of Neogene clastic sediments indicates lake depocentre migration from NW to SE. Towards late Pliocene, evaporative conditions developed with formation of gypsum, halite, celestite, mirabilite and bloedite. Continued deformation through Pleistocene developed a series of NW- SE trending domes and troughs. This setting continued to exert a controlling influence on basin and brine evolution and the progressive development of sulfate to chloride brines as, dry conditions intensified in late Pleistocene, at the end of which, extensive flat floors were formed in Dalangtan, Qarhan and other playas.The, model, which was set up based on the synthetic analyses, divides the fluctuating palaeoclimate since 750ka,B. P. into 11 warm and humid stages and 10 dry and cold stages. The water of the lakes evaporated during the dry-cold periods and were freshened during the warm-humid periods     

Isotopic constraints on fluid infiltration from an eclogite facies shear zone, Holsenøy, Norway

Granulite facies anorthosites on Holsenøy Island in the Bergen Arcs region of western Norway are transected by shear zones 0.1–100 m wide characterized by eclogite facies assemblages. Eclogite formation is related to influx of fluid along the shears at temperatures of c. 700d?C and pressures in excess of 1.7 GPa. Combined carbon and nitrogen stable isotope, ⁴⁰Ar/³⁶Ar, trace-element and petrological data have been used to determine the nature and distribution of fluids across the anorthosite-eclogite transition. A metre-wide drilled section traverses the eclogitic centre of the shear into undeformed granulite facies garnet-clinopyroxene anorthosite. Clinozoisite occurs along grain boundaries and microcracks in undeformed anorthosite up to 1 m from the centre of the shear and clinozoisite increases in abundance as the edge of the shear zone is approached. The eclogite-granulite transition, marked by the appearance of sodic pyroxene and loss of albite, occurs within the most highly sheared section of the traverse. The jadeite-in reaction coincides with increased paragonite activity in mica. The separation between paragonite and clinozoisite reaction fronts can be semiquantitatively modelled assuming advective fluid flow perpendicular to the shear zone. The inner section of the traverse (0.25 m wide) is marked by retrogressive replacement of omphacite by plagioclase + paragonite accompanied by veins of quartz-phengite-plagioclase. C-N-Ar characteristics of fluid inclusions in garnet show that fluids associated with precursor granulite, eclogite and retrogressed eclogite are isotopically distinct. The granulite-eclogite transition coincides with a marked change in CO₂ abundance and δ¹³C (<36ppm, δ¹³C=-2% in the granulite; <180 ppm, δ¹³C=-10% in the eclogite). The distribution of Ar indicates mixing between influxed fluid (⁴⁰Ar/³⁶Ar > 25 times 10³) and pre-existing Ar in the granulite (⁴⁰Ar/³⁶Ar < 8 times 10³). δ¹⁵N values decrease from +6% in the anorthosite to +3% within the eclogite shear. The central zone of retrogressed eclogite post-dates shearing and is characterised by substantial enrichment of Si, K, Ba and Rb. Fluids are CO₂-rich (δ¹³C ～ -5%) with variable N₂ and Ar abundances and isotopic compositions. Both Ar and H₂O have penetrated the underformed granulite fabric more than 0.5m beyond the granulite/eclogite transition during eclogite formation. Argon isotopes show a mixing profile consistent with diffusion through an interconnecting H₂O-rich fluid network. In contrast, a carbon-isotope front coincides with the deformation boundary layer, indicating that the underformed anorthosite was impervious to CO₂-rich fluids. This is consistent with the high dihedral angle of carbonic fluids, and may be interpreted in terms of evolving fluid compositions within the shear zone.