地下圆形衬砌隧道对沿线地震动的影响(II):数值结果

利用地下圆形衬砌隧道对入射平面P波和SV波散射级数解答，定量分析了入射波长、入射角度、隧道直径、衬砌刚度等因素对沿线地表位移放大作用的影响。计算结果表明，当入射频率较低时，地下隧道的存在对地表位移幅值影响不大；而当入射频率较高时，地表位移幅值可以达到无隧道情况的4．5倍以上；衬砌情况下地表位移幅值可以高出非衬砌情况的87．8％。建议在地铁的规划设计中考虑地下隧道的建设对隧道沿线设计地震动的影响。     

Computational modeling of cyclic mobility and post-liquefaction site response

Under seismic excitation, liquefied clean medium to dense cohesionless soils may regain a high level of shear resistance at large shear strain excursions. This pattern of response, known as a form of cyclic mobility, has been documented by a large body of laboratory sample tests and centrifuge experiments. A plasticity-based constitutive model is developed with emphasis on simulating the cyclic mobility response mechanism and associated pattern of shear strain accumulation. This constitutive model is incorporated into a two-phase (solid–fluid), fully coupled finite element code. Calibration of the constitutive model is described, based on a unique set of laboratory triaxial tests (monotonic and cyclic) and dynamic centrifuge experiments. In this experimental series, Nevada sand at a relative density of about 40% is employed. The calibration effort focused on reproducing the salient characteristics of dynamic site response as dictated by the cyclic mobility mechanism. Finally, using the calibrated model, a numerical simulation is conducted to highlight the effect of excitation frequency content on post-liquefaction ground deformations.     

Simplified vibratory characterization of alluvial basins

For the analysis of seismic wave amplification, modal methods are interesting tools to study the modal properties of geological structures. Modal approaches mainly lead to information on such parameters as fundamental frequencies and eigenmodes of alluvial basins. For a specific alluvial deposit in Nice (France), a simplified modal approach involving the Rayleigh method is considered. This approach assumes a set of admissible shape functions for the eigenmodes and allows a fast estimation of the fundamental frequency of the basin. The agreement with other numerical results (Boundary Element Method) and experimental ones is fully satisfactory. The simplified modal method then appears as an efficient mean for the global vibratory characterization of geological structures towards resonance. To cite this article: J.-F. Semblat et al., C. R. Geoscience 335 (2003).     

Local site effects in Latur, India: an empirical study based on the aftershocks of the Killari earthquake of September 29, 1993

The site amplification is estimated at five seismic stations of the Latur region using the horizontal to vertical spectral ratios of 33 aftershocks of the main Killari earthquake of September 29, 1993 (UTC). Spectral amplifications, ranging from a factor of 2–6 are found to vary with frequency at different places. Significant amplification is found at four sites within the Latur region, at Basavakalyan, Kasgi, Killari, and Mudgad Eakoji villages. Our results show a positive correlation between the site amplification and the damage pattern in area. The pattern and the nature of the site amplification estimated in the present study corroborates also with the analytical models and the borehole data indicating alternating layers of unconsolidated sediments and basaltic rocks.     

MALBAC技术扩增微生物群落基因组的效率评估

环境样品的低生物量是微生物宏基因组学研究面临的首要挑战,通过基因组扩增技术来满足高通量测序对DNA样品量的需求是最常用的解决策略。MALBAC(Multiple Annealing and Looping Based Amplification Cycles)基因组扩增试剂盒最初为扩增和研究哺乳动物的单细胞基因组而研发。本文中,我们通过人工构建的微生物群落来检测该试剂盒在微生物宏基因组扩增方面的效率和应用可行性。结果表明,每个标准反应中,10 pg的DNA模板量足以满足MALBAC试剂盒对样品扩增的需要。每个标准反应DNA模板用量为10和100 pg时,所扩增DNA样品的基因组覆盖度与原始未扩增样品表现出高度的一致性,证明MALBAC试剂盒扩增效果的高度稳定性和一致性。常用的GenomePlex全基因组扩增试剂盒使我们可以在每个标准反应DNA模板量为100 pg的条件下扩增获得足够的DNA样品,但是结果表明该参照试剂盒无法有效的实现对群落中低丰度细菌菌株基因组的线性扩增。对于MALBAC试剂盒和参照试剂盒而言,在扩增高GC含量的微生物物种基因组DNA方面效率低下。我们的实验结果表明MALBAC试剂盒在高效扩增环境样品宏基因组DNA方面的可行性,但对该试剂盒在扩增环境样品中高GC含量微生物物种方面的适用性存在疑虑。     

复杂载荷作用下立管触地段损伤管道的动力响应

触地段(Touchdown zone, TDZ)是在役钢悬链线立管(Steel catenary riser, SCR)的关键部位,在复杂载荷作用下,极易形成损伤缺陷,其载荷寿命的评估是深海结构工程中的一个关键问题。本文以大型有限元软件ABAQUS为平台,运用损伤管道实体单元与土弹簧阻尼单元相互作用的模型模拟触地段损伤海底管道在复杂载荷作用下的动力响应,数值计算考虑了管-土相互作用过程中的材料非线性、几何非线性以及接触非线性。讨论了单一环向体积损伤位于触地段管道的不同位置时,触地段损伤管道在不同载荷作用下的动力特性及特征点的动力响应。结果表明,管道所受内外压力以及管道提升端的竖向位移载荷会影响结构的自振频率;体积损伤部位的动力响应较完好部位更剧烈;体积损伤的位置和动力载荷频率对管道动力放大系数的影响很大;当动力载荷的激励频率越接近结构基频时,损伤管道的动力响应及动力放大系数越大。     

基于SLAF-seq技术的黑棘鲷微卫星标记开发及其在鲷科鱼类中的通用性研究

黑棘鲷(Acanthopagrusschlegelii)是广泛分布于西北太平洋的暖温性中下层经济鱼类,也是我国沿海重要的海洋捕捞鱼类和增养殖对象。然而,目前有关黑棘鲷的微卫星标记研究报道较少,难以对其种质资源状况作出精确评估。本研究采用SLAF-seq技术测序共获得22489个二至六碱基重复的黑棘鲷微卫星序列,短重复序列(二、三碱基)占总微卫星序列的90.8%,长重复序列(四至六碱基)占有9.2%。经过157对随机合成引物的多态性筛选,开发出49个高多态性的黑棘鲷微卫星标记,其中短重复序列位点有25个,长重复序列位点有24个。每个位点的等位基因数(Na)为2—20(均值为8.3),观测杂合度(Ho)和期望杂合度(He)分别为0.097—0.938和0.122—0.922(均值分别为0.663和0.701),多态信息含量(PIC)为0.118—0.897(均值为0.655)。经Bonferroni校正后,有47个位点符合哈迪-温伯格平衡(HWE),各位点间未检测到连锁不平衡现象,仅2个位点偏离HWE。结果表明,所开发的大部分微卫星标记具有高多态性,蕴含的遗传信息含量较为丰富,能够为黑棘鲷的种群遗传资源评估提供数量充足、类型多样的有效分子标记。跨物种扩增结果显示,有43个黑棘鲷微卫星标记可在9种鲷科鱼类中成功扩增,其中28个标记在太平洋棘鲷(Acanthopagruspacificus)、黄鳍棘鲷(Acanthopagruslatus)和澳洲棘鲷(Acanthopagrusaustralis)中具有较好的通用性,2个标记在平鲷(Rhabdosargussarba)、蓝点赤鲷(Pagruscaeruleostictus)、真赤鲷(Pagrusmajor)、二长棘犁齿鲷(Evynnis cardinalis)及黄牙鲷(Dentex hypselosomus)中具有通用性。这些通用性标记可为阐明鲷科属、种间的系统进化关系和棘鲷属鱼类的群体遗传学分析提供新的标记来源和研究角度。     

不同光程放大校正因子对中国近海典型水体吸收光谱的影响

在总结各种文献对光程放大校正因子研究的基础上,通过颗粒物吸收系数量值和吸收光谱谱形两个方面,对不同光程放大校正因子对中国近海典型水体颗粒物吸收光谱的影响进行了比较。当ODf-ODf(750 nm)的吸光度在0.005～0.5的范围时,不同光程放大校正因子得到的悬浮颗粒物吸光度值差异较大。     

Sensitive and rapid detection of two toxic microalgae Alexandrium by loop-mediated isothermal amplification

A loop-mediated isothermal amplification (LAMP) assay was designed and evaluated for rapid detection of the toxic microalgae Alexandrium catenella and A. minutum, which can produce paralytic shellfish poisoning (PSP). Two sets of four specific primers targeting these two species were derived from the sequence of internal transcribed spacer (ITS) of ribosomal DNA. The method worked well in less than an hour under isothermal conditions of 65℃. LAMP specificity was validated in closely related algae as a comparison, suggesting the strict specificity of the LAMP primers. Two visual inspection approaches were feasible to interpret the positive or negative results. The detection limits of A. catenella and A. minutum samples using the LAMP assay were found to be 5.6 and 4.5 pg DNA, respectively. The sensitivity of this LAMP assay was 10 or 100-fold higher than Polymerase Chain Reaction (PCR) method in detecting the two microalgae. These characteristics of species specificity, sensitivity, and rapidity suggest that this method has the potentiality in the monitoring of red tide caused by A. catenella and A. minutum.     

利用扩增vvhA基因的环介导等温扩增技术快速，特异而敏感地检测创伤弧菌

创伤弧菌是一种可感染人类的河口病原菌。建立快速,特异而敏感的检测方法,有助于创伤弧菌感染的早期疾病诊断和及时治疗。本研究设计了针对vvhA基因的一系列引物（包括两对外部引物和两对内部引物）,采用环介导等温扩增技术（LAMP）来检测创伤弧菌。结果显示,本方法的最适扩增温度是63℃,反应仅需35分钟。扩增产物不仅可以用含有DNA ladder的琼脂糖凝胶电泳检出,也可借助钙黄绿素直接肉眼观察。采用45株菌株检测该方法的特异性,其中所有创伤弧菌均被检出而其他菌株检测结果皆为阴性。本方法的敏感性是普通PCR扩增的100倍,同时利用该方法可以准确检测出所有的模拟样品、临床标本及环境样品。与其他已知方法比较,针对vvhA基因的介导等温扩增技术可以快速、简单、敏感及特异地鉴定创伤弧菌。