中国鲎基因组微卫星富集文库的构建及分析

本研究旨在从DNA分子水平上研究中国鲎(Tachypleus tridentatus)种群遗传多样性及种群结构等相关信息,以期为保护其野生群体种质资源提供科学依据。本研究通过生物素—磁珠富集法筛选微卫星标记,构建中国鲎基因组微卫星文库。基因组DNA经Fast Digest Tru1I酶切后,选取400 bp~1000 bp片段,用生物素标记的(GT)15、(CT)15混合探针与其杂交,杂交复合物与链霉亲和素磁珠结合,捕获含有重复序列的微卫星片段,纯化后连接PMD19-T载体克隆,构建基因组微卫星文库。从334个阳性克隆中随机选取196个片段大于400 bp的阳性克隆进行测序,共获得127个微卫星序列,其中完美型占69.3%、非完美型占11.0%、复合型占19.7%。除探针使用的GT和CT的重复序列外,还筛选到多碱基GCT、TGG、AAAC、ACAA、GATTT、TTTTA的重复序列。根据微卫星序列设计选择合成40对引物,结果显示其中3对具有较高多态性,可作为进一步评价中国鲎野生种质资源等遗传信息的有效遗传标记。     

基于四种水产病原弧菌的简型芯片检测体系的优化

基因芯片技术在病原菌检测领域展现出良好的前景,本文依托水产病原菌基因检测芯片的检测体系,以水产常见病原弧菌的hsp60、toxR基因检测探针为研究对象,系统研究不同点样液配方、寡核苷酸探针浓度、荧光标记物质浓度、杂交温度、杂交时长对芯片杂交效果的影响,并进行相应优化。结果表明,杂交温度为60℃、杂交时长为2h、探针浓度为1μmol/L、Cy3标记的随机引物的用量为150pmol时,芯片的经济性、灵敏度、检测效率达到均衡;以0.1mol/L磷酸氢二钠和25%二甲基亚砜混合溶液作为点样液,效果较好。优化后的芯片对4种弧菌的检测没有出现交叉杂交现象,探针特异性达到100%;对溶藻弧菌全基因组DNA检测灵敏度为10fg,高出PCR方法约2个数量级。     

Further birth records of elephant seals Mirounga leonina in New Zealand (note)

The second and third recorded births of southern elephant seals Mirounga leonina on the mainland of New Zealand occurred at Kaikoura in mid‐October 1976. One female pup died within 14 d of birth and the other (sex unknown) disappeared from the region with its mother on 19 November 1976.     

重金属Cu、Pb对泥鳅(Misgurnus anguillicaudatus)卵细胞凋亡及DNA损伤的SCGE试验

采用室内暴露试验方法,以单细胞凝胶电泳技术(SCGE)检测,研究了Cu、Pb不同浓度梯度与不同暴露时间联合染毒对泥鳅卵细胞DNA的损伤.结果表明,各Cu、Pb浓度组DNA平均迁移长度增加,与阴性对照组比较差异有显著性(P＜0.05).此外,随着Cu、Pb染毒剂量的增加,各试验组DNA的平均迁移长度逐渐增加,在试验浓度梯度范围内(Cu 0.01mg/L+Pb 0.05mg/L、Cu 0.10mg/L+Pb 0.50mg/L、Cu 0.25mg/L+Pb 0.75mg/L),存在较为显著的剂量-效应关系(P＜0.05),但未见明显的时间-效应关系(P＞0.05).Cu、Pb可引起泥鳅卵细胞凋亡和DNA损伤,卵细胞的不同损伤水平可望作为较为理想的水环境基因毒性指标.     

DNA identification of Pacific bluefin tuna (Thunnus orientalis) in the New Zealand fishery

Muscle samples were collected from 69 specimens identified as Pacific bluefin tuna (Thunnus orientalis) (Temminck and Schlegel, 1844) in the New Zealand Exclusive Economic Zone (EEZ) between 1990 and 2000. Identifications before 1996 were based on body size and colour of the caudal keel; later identifications were mostly based on the shape of abdominal cavity. The tissue samples were tested with a diagnostic mitochondrial DNA marker that distinguishes southern bluefin Thunnus maccoyii (Castelnau, 1872) and Pacific bluefin tuna T. orientalis; 59 specimens were confirmed as T. orientalis and 10 as T. maccoyii. Specimens recorded as Pacific bluefin tuna by the shape of the abdominal cavity were correctly identified as T. orientalis, and this character can be used to identify large specimens landed on tuna vessels. Some specimens recorded as Pacific bluefin tuna on the basis of colour and size were T. maccoyii; and early records of T. orientalis in New Zealand waters, based on these characters, are unreliable. Unusual colour patterns were reported in some specimens of T. orientalis but not T. maccoyii. The Pacific bluefin tuna T. orientalis accounted for less than 0.3% of the bluefin tuna catch in the New Zealand EEZ during the 1990s.     

硅酸盐玻璃中的Na和K含量电子探针分析条件设定探讨

含Ti硅酸盐玻璃在基础科学研究和应用技术开发上均有重要价值,亟需对其进行准确的成分分析,为进一步的科研工作提供重要的数据支撑.对玻璃进行电子探针分析时,由于样品的易损性和其中(Na和K)阳离子在电子束轰击下极易发生迁移和扩散,因此往往需要经过条件实验来确定合适的分析条件,确保样品在该条件下能够保持尽量稳定的状态,才能获...     

吉林延边地区浅成热液金(铜)矿床的~(40)Ar/~(39)Ar激光探针测年与成矿时代讨论

延边地区是中国东北部陆缘浅成热液金铜矿床发育的地区之一,广泛发育着浅成热液金矿床、中温热液金(铜)矿床和中深成中高温热液富金铜矿床(类斑岩型);富金铜矿床的成矿时代发生在105～102 Ma,为了进一步确定浅成热液金矿床与中深成中高温热液富金铜矿床的成矿动力学背景,采用流体包裹体的~(40)Ar/~(39)Ar激光探针定年法,对该区典型浅成热液金矿床进行了精细的年代学测定,获得刺猬沟金矿床、五星山金矿床和杜荒岭金矿床的脉石矿物石英流体包裹体的~(40)Ar/~(39)Ar等时线年龄分别为(141±7)Ma、(123±7)Ma和(107±6)Ma,其中刺猬沟金矿床((141±7)Ma)和五星山金矿床((123±7)Ma)的脉石矿物石英流体包裹体含有过剩放射性成因~(40)Ar,而杜荒岭金矿床((107±6)Ma)的脉石矿物石英流体包裹体几乎不含或含极少量过剩放射性成因~(40)Ar。结合最新获得的相关地质体的精细年代学成果,认定该区浅成热液金矿床成矿作用均发生在早白垩世晚期,或发生在早白垩世晚期火山喷发、浅成岩浆就位之后,其形成环境与富金铜矿床一致,为古太平洋板块向亚洲大陆正北向俯冲转入Izanagi-Farallon板块西向俯冲的构造转换期。     

Evaluation of a Quality Control Monitor Material for the Routine Electron Probe Microanalysis of Kimberlite Exploration Garnets

Election probe microanalysis of indicator minerals is extensively used in the exploration for kimberlite deposits, the evaluation of specific kimberlite occurrences for their diamond bearing potential and to classify grains into different chemical and lithological mantle associations. Kimberlite exploration programmes can involve several tens of thousands of indicator mineral analyses. Procedures for monitoring data quality and consistency of analyses across large data sets are commonly absent. Suitable monitor minerals should be used to verify the data quality of kimberlite exploration and evaluation data sets. This material should have a suitable composition, be homogenous, be available in sufficient quantities and have a similar appearance to the unknown samples. Garnet P1, a megacryst garnet from the Premier kimberlite, was found to have a suitable composition as a monitor for kimberlite garnet analyses. Data were collected on the monitor material at regular intervals during routine analyses, over an extended period, both as a fixed grain mounted on the sample holder and as separate grains set within batches of routine samples. The data were evaluated to assess the quality and consistency in the analyses of large data sets over time. The monitor material was also analysed at independent laboratories using their routine analytical set-up and calibration procedures for comparative purposes. Values are given for the mean ± 2s range, which can serve as guide values for acceptable analyses for all elements.     

Genetic variation of the small yellow croaker (Larimichthys polyactis) inferred from mitochondrial DNA provides novel insight into the fluctuation of resources

The small yellow croaker (Larimichthys polyactis) belongs to the family Sciaenidae, which is an offshore warm fish species and widely distributed in the western Pacific. In this study, the variation of genetic diversity and genetic differentiation among L. polyactis populations was analyzed by mitochondrial DNA control region. A total of 110 polymorphic sites were checked, which defined 134 haplotypes. High level of haplotype diversity (h=0.993±0.002) was detected in the examined range. Population genetic structure analyse (analysis of molecular variance, F_st) showed there were high gene flow among L. polyactis populations. The result showed that there were relatively high genetic diversity and low genetic differentiation among the Yellow Sea and the East China Sea populations, which can be attributed to diverse habitats, wide distribution range and high mutation rate of control region. Using phylogenetic methods, coalescent analyses (neutrality tests, mismatch distribution analysis, Bayesian skyline analyses) and molecular dating interpreted in conjunction with paleoclimatic and physiographic evidence, we inferred that the genetic make-up of extant populations of L. polyactis was shaped by Pleistocene environmental impacts on the historical demography of this species. Besides, relatively constant genetic diversity and larger effective population size were detected in recent L. polyactis population. The result showed that the fishing policy certainly, such as the summer closed fishing, played a role in protecting resources of L. polyactis. This study can offer a wealth of biological novelties which indicates genetic structure of L. polyactis population and provides the foundation for resources protection and policy setting.     

基于线粒体控制区的中国东南沿海黄鳍棘鲷群体遗传多样性和遗传分化

本研究通过对线粒体控制区序列进行分析的技术手段,对中国宁德（ND）、厦门（XM）、漳浦（ZP）、南澳岛（NAD）、湛江（ZJ）、海口（HK）与北海（BH）的7个野生黄鳍棘鲷（Acanthopagrus latus）群体的遗传多样性和遗传分化进行比较分析。结果表明：中国东南沿海的野生黄鳍棘鲷群体呈现出中等以上的遗传多样性特征,48个黄鳍棘鲷样品的控制区序列长度为580 bp,单倍型数目为44个,总体的单倍型多样性指数（Hd）和核苷酸多样性指数（Pi）分别为0.996和0.017 30。7个野生黄鳍棘鲷群体间的遗传分化程度较低,各群体间的遗传距离为0.010 28~0.029 87。群体间的遗传分化系数（FST）为-0.068 41~0.545 86,北海群体和其他群体间存在一定程度的遗传分化。AMOVA分析显示群体内的遗传变异占比为83.34%,大部分遗传变异发生在组群内;但北海群体与其他6个群体分为两个组群后,组群间的遗传变异占比为42.66%,两个组群间存在较大程度的遗传变异。基于Kimrua距离法构建的系统进化树中显示北海群体聚为一个分支,另外6个群体聚为一支。基于TCS network构建的单倍型网络图中44个单倍型混杂在一起,未按照水系格局和地理距离进行分布,表明黄鳍棘鲷群体间未形成多个单系群。本研究可为中国东南沿海野生黄鳍棘鲷群体的种质资源利用和保护提供科学依据。