Diurnal variability in turbidity and coral fluorescence on a fringing reef flat: Southern Molokai,Hawaii

Terrigenous sediment in the nearshore environment can pose both acute and chronic stresses to coral reefs. The reef flat off southern Molokai, Hawaii, typically experiences daily turbidity events, in which trade winds and tides combine to resuspend terrigenous sediment and transport it alongshore. These chronic turbidity events could play a role in restricting coral distribution on the reef flat by reducing the light available for photosynthesis. This study describes the effects of these turbidity events on the Hawaiian reef coral Montipora capitata using in situ diurnal measurements of turbidity, light levels, and chlorophyll fluorescence yield via pulse-amplitude-modulated (PAM) fluorometry. Average surface irradiance was similar in the morning and the afternoon, while increased afternoon turbidity resulted in lower subsurface irradiance, higher fluorescence yield (ΔF/F_m^′), and lower relative electron transport rates (rETR). Model calculations based on observed light extinction coeffecients suggest that in the absence of turbidity events, afternoon subsurface irradiances would be 1.43 times higher than observed, resulting in rETR for M. capitata that are 1.40 times higher.     

Climate change and coral reef bleaching: An ecological assessment of long-term impacts,recovery trends and future outlook

Since the early 1980s, episodes of coral reef bleaching and mortality, due primarily to climate-induced ocean warming, have occurred almost annually in one or more of the world's tropical or subtropical seas. Bleaching is episodic, with the most severe events typically accompanying coupled ocean–atmosphere phenomena, such as the El Niño-Southern Oscillation (ENSO), which result in sustained regional elevations of ocean temperature. Using this extended dataset (25+ years), we review the short- and long-term ecological impacts of coral bleaching on reef ecosystems, and quantitatively synthesize recovery data worldwide. Bleaching episodes have resulted in catastrophic loss of coral cover in some locations, and have changed coral community structure in many others, with a potentially critical influence on the maintenance of biodiversity in the marine tropics. Bleaching has also set the stage for other declines in reef health, such as increases in coral diseases, the breakdown of reef framework by bioeroders, and the loss of critical habitat for associated reef fishes and other biota. Secondary ecological effects, such as the concentration of predators on remnant surviving coral populations, have also accelerated the pace of decline in some areas. Although bleaching severity and recovery have been variable across all spatial scales, some reefs have experienced relatively rapid recovery from severe bleaching impacts. There has been a significant overall recovery of coral cover in the Indian Ocean, where many reefs were devastated by a single large bleaching event in 1998. In contrast, coral cover on western Atlantic reefs has generally continued to decline in response to multiple smaller bleaching events and a diverse set of chronic secondary stressors. No clear trends are apparent in the eastern Pacific, the central-southern-western Pacific or the Arabian Gulf, where some reefs are recovering and others are not. The majority of survivors and new recruits on regenerating and recovering coral reefs have originated from broadcast spawning taxa with a potential for asexual growth, relatively long distance dispersal, successful settlement, rapid growth and a capacity for framework construction. Whether or not affected reefs can continue to function as before will depend on: (1) how much coral cover is lost, and which species are locally extirpated; (2) the ability of remnant and recovering coral communities to adapt or acclimatize to higher temperatures and other climatic factors such as reductions in aragonite saturation state; (3) the changing balance between reef accumulation and bioerosion; and (4) our ability to maintain ecosystem resilience by restoring healthy levels of herbivory, macroalgal cover, and coral recruitment. Bleaching disturbances are likely to become a chronic stress in many reef areas in the coming decades, and coral communities, if they cannot recover quickly enough, are likely to be reduced to their most hardy or adaptable constituents. Some degraded reefs may already be approaching this ecological asymptote, although to date there have not been any global extinctions of individual coral species as a result of bleaching events. Since human populations inhabiting tropical coastal areas derive great value from coral reefs, the degradation of these ecosystems as a result of coral bleaching and its associated impacts is of considerable societal, as well as biological concern. Coral reef conservation strategies now recognize climate change as a principal threat, and are engaged in efforts to allocate conservation activity according to geographic-, taxonomic-, and habitat-specific priorities to maximize coral reef survival. Efforts to forecast and monitor bleaching, involving both remote sensed observations and coupled ocean–atmosphere climate models, are also underway. In addition to these efforts, attempts to minimize and mitigate bleaching impacts on reefs are immediately required. If significant reductions in greenhouse gas emissions can be achieved within the next two to three decades, maximizing coral survivorship during this time may be critical to ensuring healthy reefs can recover in the long term.     

Floating and fixed artificial habitats: Spatial and temporal patterns of benthic communities in a coral reef environment

While natural marine habitats with motion capabilities, e.g., kelps and seaweeds, have been studied alongside their associated fouling communities, little is known of the effect of motion on the communities of floating artificial habitats such as buoys, rafts, and pontoons, particularly in tropical systems. Hydrodynamic features greatly differ between floating and fixed artificial substrata, which in turn affect the structure of their associated communities. This study tested the hypothesis that floating and fixed artificial installations in a tropical reef system (Eilat, Red Sea) would support different benthic communities throughout space and time. Specifically, we examined differences in communities recruited onto settlement plates between floating and fixed installations deployed at three different sites, along a two-year monitoring period. The three sites exhibited distinct differences in species assemblages between the monitoring dates (6, 12, 18 and 24 months post deployment), mainly between the first and the last two dates. The average level of dissimilarity between floating and fixed installations increased over time at all sites. Over 50% of the dissimilarity between the floating and fixed installations resulted from five taxonomic groups i.e., bryozoans, bivalves, barnacles, sponges, including the amount of bare space on the settlement plates. The contribution of these groups to the dissimilarity changed both temporally within each site, and spatially among sites. The observed differences were related to the hydrodynamic characteristics of floating and fixed habitats, interacting with biotic features such as predation, successional processes and seasonality; and abiotic features including small-scale spatial changes, light, and position in the water column.     

The onset of fish colonization in a coastal defence structure (Chioggia,Northern Adriatic Sea)

Coastal defence structures constitute the most extensive hard substrates of the Northwestern Adriatic Sea and are known to sustain rich benthic and nektonic communities. To appreciate the pattern of colonization, we studied the fish assemblage of a recently deployed breakwater. We compared observations from two years, the different sides (landward and seaward) of the barrier, and the two fringes, characterized by timing of work completion. The results indicate that colonization, still in process, follows different patterns among species. Benthic and necto-benthic species presented a striking increase in abundance and richness in the second year of colonization, while more mobile species did not evince any variation between years. Differences in mobility among species suggest that the latter group may have reached the breakwater from nearby artificial substrates, whereas the former colonized the new structure as recruits. In addition, fish assemblages differed between the two sides, likely due to variation in the environmental characteristics, and according to depth, reflecting species preferences.     

The mesoscale variability in the Caribbean Sea. Part I: Simulations and characteristics with an embedded model

The variability in the Caribbean Sea is investigated using high resolution (1/15°) general circulation model experiments. For the first time in this region, simulations were carried out with a 2-way nested configuration of the NEMO primitive equation model. A coarse North Atlantic grid (1/3°) reproduces the main features of the North Atlantic and Equatorial circulation capable of influencing ocean dynamics in the Caribbean Sea. This numerical study highlights strong dynamical differences among basins and modifies the view that dynamics are homogeneous over the whole Caribbean Basin. The Caribbean mean flow is shown to organize in two intense jets flowing westward along the northern and southern boundaries of the Venezuela Basin, which merge in the center of the Colombia Basin. Diagnostics of model outputs show that width, depth and strength of baroclinic eddies increase westward from the Lesser Antilles to the Colombia Basin. The widening and strengthening to the west is consistent with altimetry data and drifter observations. Although influenced by the circulation in the Colombia Basin, the variability in the Cayman Basin (which also presents a westward growth from the Chibcha Channel) is deeper and less energetic than the variability in the Colombia/Venezuela Basins. Main frequency peaks for the mesoscale variability present a westward shift, from roughly 50 days near the Lesser Antilles to 100 days in the Cayman Basin, which is associated with growth and merging of eddies.     

黑海参(Holothuria atra)对环境沉积物的摄食选择及消化系统功能适应性研究

黑海参(Holothuria atra)是热带珊瑚礁大型底栖动物群落中的代表种类之一,其摄食活动对珊瑚礁生境底质有机物的循环再利用具有重要作用。本文研究了三亚蜈支洲岛典型热带珊瑚礁海域野生黑海参的沉积物选择特征及其触手和消化系统结构功能的适应性。结果表明,黑海参摄取的沉积物颗粒相对较粗,其中粒径0.25mm部分占到了总重量的96.67%。触手上3—6个乳突形成乳突簇[直径(283.00±40.94)μm],适宜摄取大颗粒沉积物。黑海参胃内含物有机物含量显著高于环境沉积物,证实其对有机物含量的选择性;粒径0.25mm部分有机物含量占摄入总有机物量的75%,与环境沉积物中相同粒度的有机物总量占比接近(76%),表明黑海参选择的沉积物粒径范围有效保证了其高效摄入有机质。黑海参前肠的脂肪酶、淀粉酶、纤维素酶、胰蛋白酶活性最高,同时绝大部分的有机质(98.33%)在前肠被吸收。组织学定量分析表明,黑海参前肠黏膜层厚度最大,占总厚度的56.33%,这与其高效吸收有机质的功能相适应;后肠的肠壁总厚度和黏膜下层、肌层厚度均显著高于前肠和中肠,表明其具有相对更好的弹性和收缩能力,适合于大颗粒有机质的高效输送与排出。研究结果证实,黑海参摄食器官和消化道独特的结构与功能保证了其在珊瑚砂粗颗粒生境中高效摄取有机物。     

西沙群岛基底火山碎屑岩中单斜辉石的矿物化学特征及其地质意义

本文利用电子探针对南海西沙群岛琛航岛珊瑚礁底部火山碎屑岩中的单斜辉石矿物的化学特征进行了研究。结果表明,该单斜辉石属于富钙透辉石,部分有正环带结构,从核部到边部Ca、Fe、Ti的含量逐渐增加,是岩浆正常结晶顺序的反映,说明该区域的岩浆演化是向着富Ca、Fe、Ti方向发展的。主量元素数据显示,单斜辉石具有低Si高Al的特征(SiO₂=41.40%～48.44%,Al₂O₃=5.54%～10.20%),且AlⅣ含量较高,说明母岩浆为不饱和碱性岩浆系列;此外,单斜辉石Ca含量偏高,Ca/(Ca+Mg+Fe)值在46.1%～51.4%之间,推测是母岩浆的高Ca含量导致了大量高钙辉石的产出。结合西沙海域的地震和构造资料,推测琛航岛珊瑚礁的基底是玄武质火山碎屑岩组成的平顶状海山,系岩浆穿过断裂发育的岩石圈层在西沙群岛的海底喷发,随后火山碎屑物质经过堆积、固结作用而形成;该火山碎屑岩的原岩为板内碱性玄武岩。     

Study of irregular wave run-up over fringing reefs based on a shock-capturing Boussinesq model

This paper presents the results of a parametric study of irregular wave run-up over fringing reefs using the shock-capturing Boussinesq wave model Funwave-TVD to better understand the role of fringing reefs in the mitigation of wave-driven flooding. Laboratory experiments were newly performed with a typical fringing reef profile and typical hydrodynamic conditions to validate the model. Experimental data shows irregular wave run-ups are dominated by the low-frequency motions and confirms the run-up resonant phenomenon over the back-reef slope, which has been revealed in previous numerical studies. It is demonstrated that irregular wave evolution and run-up over fringing reefs are reasonably reproduced by the present model with a proper grid size. However, the infragravity run-up height and highest 2% run-up height over the back-reef slope are under-predicted due to the underestimation of the infragravity wave height over the reef flat. The validated model was then utilized to model irregular wave transformations and run-ups under different conditions. Through a series of numerical experiments, the effects of key hydrodynamic and reef geometry parameters, including the reef flat width, water depth over the reef flat, fore-reef slope angle and back-reef slope angle, on the irregular wave run-up were investigated. Variations of spectral components of irregular wave run-ups were examined to better understand the physical process underlying the effect of each parameter.     

Long‐term temporal and spatial patterns in bioeroding sponge distribution at the Abrolhos Bank,Brazil, Southwestern Atlantic

Bioeroding sponges belong to the most dominant bioeroders, significantly contributing to the erosion of coral reefs. Some species are tolerant or even benefit from environmental conditions such as ocean warming, acidification, and eutrophication. In consequence, increases in sponge bioerosion have been observed on some coral reefs over the last decades. The Abrolhos Bank is the largest coral reef system in the South Atlantic. It has been affected by sedimentation, eutrophication, overfishing, and climate change, mainly affecting coastal reefs, and at lesser intensity outer ones as well. This study aimed to describe spatial and temporal patterns in bioeroding sponge distribution in carbonate substrates in the Abrolhos Bank. Photo‐quadrats were used to compare bioeroding sponge abundance between two shallow reefs: a coastal, Pedra de Leste (PL), and an outer reef, Parcel dos Abrolhos (PAB). Each individual was delimitated over the substrate by determining the sponge surface through a line connecting the outermost papillae. The study was conducted over 6 years in 2008–2009 and 2013–2016. Four species of bioeroding sponges were identified: Cliona carteri Ridley, 1881, C. delitrix Pang, 1973, C. cf. schmidtii Ridley, 1881, and Siphonodictyon coralliphagum Rützler, 1971. The distribution and abundance of species varied between the inner and outer reefs and across the years, and displayed certain selectivity for the calcareous substrates recorded. Crustose coralline algae (CCA) were the main substrate excavated by the most abundant bioeroding species, C. carteri, and represented 70% of the substrate types occupied by this sponge (CCA, coral overgrown by CCA and plain coral). The highest abundance of bioeroding sponges observed in photo‐quadrats was 21.3 individuals/m² at the outer reefs (PAB) in 2014. The abundances or areal extents of bioeroding sponges were up to 10 times greater on the outer reefs than on the coastal ones, where sedimentation is higher and more strongly influenced by siliciclastic material. Moreover, a higher herbivorous fish biomass has been reported on outer reefs which could also influence the higher abundance of bioeroding sponges in outer reefs. During the study period of 6 years, an increase in bioeroding sponge abundance was observed at the outer reefs (PAB), with the sea surface temperature increase. As CCA have an important role in reefal cementation and carbonate production in the Abrolhos reefs, a bioerosion impact might be expected, in particular, on the outer reefs.     

Monitoring of coral communities in the inner Gulf of Thailand influenced by the elevated seawater temperature and flooding

There were two severe coral bleaching events at Ko Khang Khao, the inner Gulf of Thailand, occurred during the prolonged period of the elevated sea surface temperature (SST) in 2010 and low salinity as well as turbidity due to heavy flooding in 2011. The bleaching index (BI) and mortality index (MI) are calculated to compare the susceptibilities of coral species in the two bleaching events. The BI and MI vary significantly among the study sites and bleaching events. The most susceptible corals during both bleaching events are Acropora millepora, Pocillopora damicornis and Pavona decussate, while the most resistant species were Galaxea fascicularis, Fungia fungites, Pavona frondifera, Oulastrea crispate, and Symphyllia recta. The corals Favia favus, Goniopora columna, Platygyra pini, Symphyllia agaricia were relatively more tolerant to high SST but they are relatively more susceptible to low salinity. Coral bleaching is a phenomenon that the dissociation stress of the symbiotic relationship between zooxanthellae and their cnidarian host results in the reduction in photosynthetic pigment concentration. Among stressors, both prolonged exposure of high SST and low salinity, above and below their thresholds, respectively. The long-term resilience of coral communities at Ko Khang Khao and other coral communities close to the mouth of large rivers may depend on the frequency and duration of the exposure on the elevated SST due to atmospheric heating and low salinity due to river flooding.