许氏平鲉(Sebastes schlegeli)微卫星标记开发及野生、养殖群体遗传多样性分析

对许氏平鲉进行简化基因组测序,设计微卫星引物200对,可稳定扩增的引物190对,占95%。利用一个荣成野生群体对24个多态性较高的微卫星标记进行了评价,每个位点的等位基因数(Na)为2—21个,观测杂合度(Ho)为0.0417—0.9167,期望杂合度(He)为0.0278—0.9722,多态信息含量(PIC)为0.1948—0.9496,结果显示有20个微卫星位点为中高度多态。利用这些引物对荣成野生群体和烟台养殖群体的遗传多样性进行了比较分析,野生和养殖群体的平均等位基因数(Na)分别为8.5000、6.9583,有效等位基因数(Ne)的均值分别为4.5484、3.6365,期望杂合度(He)均值分别为0.6421、0.5840,多态信息含量均值(PIC)分别为0.6088、0.5490,平均香农-威纳指数均值为1.4605、1.2834,但F检验发现无显著差异,发现两个群体的遗传多样性都处于高度多态水平,但养殖群体遗传多样性水平低于野生群体。本研究结果说明许氏平鲉的人工繁育中,通过使用较大数量的亲本进行繁育可有效防止选育群体的遗传多样性降低,但人工定向选育对选育群体的遗传多样性也产生了一定的影响。Bonferroni校正后在两个群体中各有4个位点偏离Hardy-Weinberg平衡。本研究开发的微卫星标记为许氏平鲉遗传图谱构建、分子标记辅助育种等提供了更多标记选择,对野生和养殖群体遗传多样性分析为下一步的遗传育种提供参考。     

利用父母本微卫星标记估计大菱鲆(Scophthalmus maximus L.)幼鱼生长性状的遗传参数

The estimation of genetic parameters has played an important role in animal selective breeding for growth traits.Recently studies show that molecular markers can be incorporated into genetic evaluations. In order to improve the performance of an incomplete pedigree(i.e, only parents are known) in the genetic evaluations, 12 microsatellite markers have been applied in the estimation of the genetic parameters for body weight in a farmed population(n=1 890) of juvenile turbot(Scophthalmus maximus L.). A new relatedness called parental molecular relatedness(PMR) is estimated based on results of genotyping of 48 parents(31 males, 17 females) with microsatellites markers. The feasibility of PMR in estimation of genetic parameters is verified by comparison with pedigree related(PR) which is obtained from a complete pedigree. The results demonstrate that a high correlation(0.872) between them is found. Heritabilities are estimated using the PMR(0.52±0.13) and PR(0.55±0.22) with the same animal model. A cross-validation shows that the predictive abilities of models using the PMR and the PR are identical(0.81). From that, a conclusion can be made that PMR and PR predicted genetic values equally well in a population of juvenile turbot. Therefore PMR can be applied as an alternative of the PR when only parents are known. However, for a better performance, more markers and more families should be included in a further study.     

Marine science and technology transfer: Can the Intergovernmental Oceanographic Commission advance governance of biodiversity beyond national jurisdiction?

Marine scientific research is crucial to forge solutions in the development of a new international legally binding instrument for the conservation and sustainable use of marine biological diversity in areas beyond national jurisdiction (ABNJ) under the 1982 United Nations Convention on the Law of the Sea . The transfer of marine technology, capacity development and marine genetic resources are key issues. This paper examines how the Intergovernmental Oceanographic Commission (IOC), as a competent international organisation for marine scientific research and technology transfer, can inform the development of the instrument. Synergies between marine technology transfer and non-monetary benefit sharing of genetic resources are illustrated. Four key lessons from the IOC are examined: 1. Coordinating international cooperation in marine scientific research; 2. Enabling open access to data and knowledge; 3. Facilitating capacity development through scientific training and education; and 4. Governance of marine scientific research. Realising the potential of the IOC to advance governance solutions for ABNJ will depend on increased political will from Member States and strengthened partnerships to reduce resource constraints and enhance the IOC's capacity at global and regional scales.     

文蛤早期发育阶段生长性状遗传参数的估计

采用部分因子设计构建了23个全同胞家系,应用单性状及两性状动物模型对文蛤(Meretrix meretrix)早期不同生长发育时期的生长性状进行遗传力和相关性估计。结果表明,文蛤附着变态期以及稚贝期生长性状的遗传力并无显著差别,在0.11~0.41范围内变化,属于中等遗传力。非遗传的共同环境效应随着年龄的增长而呈现上升趋势,由附着变态期的0.02逐渐增加到稚贝期的0.38,且稚贝期的共同环境效应显著大于其附着变态期(P0.01)。壳长与壳高表型相关和遗传相关的分析结果显示,从附着变态期到稚贝期,壳长与壳高之间的表型相关及遗传相关都存在极显著的正相关性,相关系数的范围分别为0.84~0.95、0.93~0.99。早期发育连续时间段生长性状之间的遗传相关均为正相关,但并不显著,且不同时期的遗传相关也不尽相同(0.34~0.71)。     

Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity

The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow.     

东营凹陷沙河街组碳酸盐胶结物成因机制

正碳酸盐矿物是砂岩储层中主要的成岩产物之一。碳酸盐胶结物较为活跃,其溶蚀及沉淀广泛发育于砂岩储层内。碳酸盐的溶蚀及沉淀是砂岩储层改造的重要成因之一。明确碳酸盐胶结物的成因机制对预测深部储层具有重要的意义。本次研究,采用铸体薄片及扫描电镜观察,明确碳酸盐胶结物的产状。对不同产状碳酸盐胶结物的分布、     

中国西北侏罗纪煤系显微组分生烃潜力、产物地球化学特征及其意义

从吐哈盆地侏罗纪煤中分离富集了藻类体、孢子体、角质体、镜质体、基质镜质体和丝质体6种主要显微组分,进行了热解及热模拟实验,并对各显微组分热模拟生成的产物热解油进行了碳同位素组成等分析。各显微组分热解生烃潜力及其热解产物热解油的碳同位素组成表明,煤系有机质中藻类体的生油潜力最高,生成的液态烃类的碳同位素组成最轻;孢子体、角质体等陆源富氢组分生烃潜力低于藻类体,生成的液态烃类的碳同位素组成重于藻类体生成的液态烃类,与煤系含油气盆地中原油的碳同位素组成基本一致。这些富氢显微组分应该是煤系有机质中主要的生油显微组分。镜质体和基质镜质体的生油潜力相对较低,其生成的液态烃类的碳同位素组成比一般煤系原油重得多,而且这些组分本身对液态烃具有较强的吸附力,尽管其在煤系有机质中所占的比例很大,仍然难以成为生成液态石油的主要显微组分,只能在高成熟演化阶段成为良好的生气显微组分。丝质体等惰性组分生烃潜力极低,不可能成为生油组分。此外,结合原煤的显微组分组成、生烃潜力和元素分析,提出仅仅以壳质组的含量高低来评价煤的生烃潜力不完全可靠,热解是经济、快速、有效的评价方法。     

海原-六盘山断裂带现今地震危险性的数值模拟分析

基于正交各向异性理论表征断层的变形行为,将平行断层面的剪切模量和周围介质剪切模量的比值作为反演参数,以海原-六盘山断裂附近现今GPS观测地壳水平运动速度场作为约束,通过构建三维有限元模型,采用遗传算法,反演了海原-六盘山断裂平行断层面的剪切模量分布.结果显示:六盘山断裂中南段平行断层面剪切模量与周围介质接近,且沿断层面...     

基于SLAF测序分析3个塔形马蹄螺群体的遗传结构和多样性*

塔形马蹄螺(Tectus pyramis), 海洋软体动物, 广泛分布于中国深圳大鹏湾、海南岛、西沙和南沙群岛的珊瑚礁生态系统中。文章采用特异性位点扩增片段简化基因组测序技术(SLAF-seq)对来自深圳(SZ)、三亚(SY)和西沙(XS)的塔形马蹄螺群体的遗传多样性和结构进行分析。通过测序共获得115.74Mb读长数据, 平均测序深度为337.87倍, 测序质量值(Q₃₀)平均为94.07%。研究获得118679个多态性SLAF标签, 获得846502个高度一致的群体单核苷酸多态性位点(SNPs), 其中有155个显著差异SNPs。3个群体的平均观察杂合度(H_o)和期望杂合度(H_e)值分别为0.1441~0.1611和0.2537~0.2695。平均多态性信息含量(PIC)为0.2048~0.2176。通过系统发育树分析、主成分分析和聚类分析, 将45个个体大致分为3个类群, 每个群体的所有个体都可以聚类成一个类群。SZ和SY群体的遗传结构相似, 遗传距离最低(0.2510), 遗传分化系数F_st值最低(0.0818)。但XS与其他两个群体间的遗传分化明显, 尤其是XS和SZ群体(F_st=0.1868)。3个群体的遗传分化可能与海流和地理位置有关。     

基于线粒体控制区序列的花斑蛇鲻遗传多态性分析

花斑蛇鲻(Saurida undosquamis)是一种重要的底层经济鱼类, 本研究利用线粒体控制区(D-loop区)序列分析了中国近海分布的花斑蛇鲻的遗传结构和遗传多样性, 一共测定了6个地理群体129尾样本的D-loop区全序列。结果显示, 全长为921bp的序列包含71个多态性位点, 共检测到101个单倍型。花斑蛇鲻总体呈现很高的单倍型多样性(0.9873 ± 0.0048)和较低的核苷酸多样性(0.0132 ± 0.0067)的特征。基于邻接法构建的单倍型系统发育树的拓扑结构很浅, 没有形成分化明显的支系。单倍型在各个地理群体中的分布呈分散交叉状态, 表明地理群体间没有显著的遗传分化。6个群体的分子方差分析显示, 花斑蛇鲻绝大部分的遗传变异(99.87%)来源于群体内的个体之间, 而群体间的变异仅占0.13%。大部分地理群体之间的遗传分化指数(F_ST)均很小, 揭示了群体间的基因交流很频繁, 存在高度的遗传同质性。这些研究结果表明中国近海的花斑蛇鲻遗传多样性丰富, 没有明显的遗传分化, 是一个随机交配群, 可以作为同一个渔业单元来管理。