Metal (Al, Fe, Mn and Cu) distributions and origins of polycyclic aromatic hydrocarbons (PAHs) in the surface sediments of the Marmara Sea and the coast of Istanbul, Turkey

In this study, total metal (Al, Fe, Mn and Cu) and PAHs analyses have been done in the surface sediments. Sediment samples have been collected from seven parts of the Marmara Sea and the coast of Istanbul during 2009. Total Al, Fe, Mn and Cu contents vary between 1.8% and 5.4%; 1.1% and 2.8%; 122 and 259 μg g⁻¹; 27 and 416 μg g⁻¹, respectively. EF and CF values of Fe and Mn are lower than 1.5 and 1, respectively, in all the stations. Total PAH contents range between 135 and 6009 ng g⁻¹ in the surface sediments. The origin of PAHs has been found pyrolitic according to the Phe/Ant ratio in the all stations. Contrastingly, at K0, MKC and MY1 Stations, PAH origins have been observed petrogenic according to the Flu/Pyr ratio.     

Parameterization of bedform morphology and defect density with fingerprint analysis techniques

A novel method for parameterizing the morphology of seafloor ripples with fingerprint analysis numerical techniques is presented. This fully automated analysis tool identifies rippled areas in two-dimensional imagery of the seafloor, and returns ripple orientation and wavelength as well as a new morphological parameter, the spatial density of ripple defects. In contrast to widely used manual and spectral parameterization methods, this new technique yields a unique probability distribution for each derived parameter, which describes its spatial variability across the sampled domain. Here we apply this new analysis technique to synthetic and field collected side-scan sonar seafloor images in order to assess the methods capacity to define bed geometry across a wide range of simulated and observed morphological conditions. The resulting orientation and wavelength values compare favorably with those of the existing manual and spectral parameterization methods, and are superior under environmental conditions characterized by low signal to noise ratios as well as high planform ripple sinuosity. Furthermore, the resulting ripple defect density values demonstrate correlation with ripple orientation, wave direction, and the Shields parameter, which is consistent with recent investigations that have theoretically linked this parameter to hydrodynamic forcing conditions. The presented fingerprint analysis method surpasses the capacity of existing methods for ripple parameterization and promises to yield greater insight into theoretical and applied problems associated with the temporal and spatial variability of ripple morphology across a wide spectrum of marine environments.     

Benthic biogeochemical cycling of mercury in two contaminated northern Adriatic coastal lagoons

Previous research recognized most of the Northern Adriatic coastal lagoon environments as contaminated by mercury (Hg) from multiple anthropogenic sources. Among them, the Pialassa Baiona (P.B.) Lagoon, located near the city of Ravenna (Italy), received between 100 and 200 tons of Hg, generated by an acetaldehyde factory in the period 1957-1977. Further east, the Grado Lagoon has been mainly affected by a long-term Hg input from the Idrija mine (western Slovenia) through the Isonzo River since the 16th century. Hg cycling at the sediment-water interface (SWI) of the two lagoons was investigated and compared by means of an in situ benthic chamber, estimating diffusive Hg and Methyl-Hg fluxes in the summer season. Major chemical features in porewaters (Fe, Mn, H₂S, dissolved inorganic (DIC) and organic carbon (DOC), nutrients) and in the solid phase (C_org, N and S) were also explored to understand the general biogeochemical conditions of the system in response to benthic respiration. The daily integrated flux for the methylated Hg form was extremely low in P.B. Lagoon, accounting for only 7% of the corresponding flux calculated for the Grado Lagoon. Despite a higher sedimentary Hg content in the P.B. Lagoon (14.4-79.0 μg g⁻¹) compared to the Grado Lagoon (10.7-12.5 μg g⁻¹), the in situ fluxes of Hg in the two experimental sites appeared similar. A selective sequential extraction procedure was applied to the solid phase, showing that the stable crystalline mineral phase cinnabar (HgS) is the predominant Hg fraction (about 50%) in the Grado Lagoon surface sediments. Conversely, Hg mobilization and sequestration in the P.B. Lagoon is related to the extremely anoxic redox conditions of the system where the intense sulfate reduction, by the release of sulfur and the formation of sulfides, limits the metal recycling at the SWI and its availability for methylation processes. Thus, the environmental conditions at the SWI in the P.B. Lagoon seem to represent a natural “barrier” for the potential risk of Hg transfer to the aquatic trophic chain.     

Curvilinear immersed boundary method for simulating coupled flow and bed morphodynamic interactions due to sediment transport phenomena

The fluid-structure interaction curvilinear immersed boundary (FSI-CURVIB) numerical method of Borazjani et al. [3] is extended to simulate coupled flow and sediment transport phenomena in turbulent open-channel flows. The mobile channel bed is discretized with an unstructured triangular mesh and is treated as a sharp-interface immersed boundary embedded in a background curvilinear mesh used to discretize the general channel outline. The unsteady Reynolds-averaged Navier-Stokes (URANS) equations closed with the k − ω turbulence model are solved numerically on a hybrid staggered/non-staggered grid using a second-order accurate fractional step method. The bed deformation is calculated by solving the sediment continuity equation in the bed-load layer using an unstructured, finite-volume formulation that is consistent with the CURVIB framework. Both the first-order upwind and the higher-order hybrid GAMMA schemes [12] are implemented to discretize the bed-load flux gradients and their relative accuracy is evaluated through a systematic grid refinement study. The GAMMA scheme is employed in conjunction with a sand-slide algorithm for limiting the bed slope at locations where the material angle of repose condition is violated. The flow and bed deformation equations are coupled using the partitioned loose-coupling FSI-CURVIB approach [3]. The hydrodynamic module of the method is validated by applying it to simulate the flow in an 180° open-channel bend with fixed bed. To demonstrate the ability of the model to simulate bed morphodynamics and evaluate its accuracy, we apply it to calculate turbulent flow through two mobile-bed open channels, with 90° and 135° bends, respectively, for which experimental measurements are available.     

Macroinvertebrates in the bed sediment of the Yellow River

Extensive agricultural,industrial and urban development in the Yellow River,China,have modified the sediment-water balance,flow and inundation regimes,longitudinal connectivity,integrity of riparian vegetation,and water quality.Macroinvertebrate assemblages in the bed sediment of main channel and major reservoirs of the Yellow River are described in detail for the first time.A total of 74 taxa comprising 17 taxa of oligochaetes,48 taxa of aquatic insects,5 taxa of molluscs,and 4 taxa of other animals were recorded.A range of feeding guilds were represented,including, collector-gatherers(32 taxa),predators(17 taxa),scrapers(16 taxa),shredders(6 taxa)and collector-filterers(2 taxa).Both the mean density and biomass of macroinvertebrates were significantly higher in sites located in the artificial reservoirs compared with the main river channel. Assemblages varied spatially;Oligochaetes dominated assemblages in upper reaches,insects dominated in middle reaches and other animals(e.g.Crustacea)dominated in lower reaches. Collector-gatherers were dominant throughout the entire river.Classification analysis identified five site-groups on the basis of macroinvertebrate presence/absence:downstream of reservoirs;vegetated sites;reservoir sites;polluted sites,and;lower-reach sites.Lower macroinvertebrate richness,density and biomass,compared with other similar large rivers,were attributed to modification of the sediment-water balance and associated disturbance of benthic habitats.Pollution,stability of sediment and sediment concentration combined to influence the distribution of macroinvertebrates.This knowledge will substantially benefit the recent focus on the health and environmental water requirements of the Yellow River.     

Effects of hydraulic structures on river morphological processes

Study of hydraulic structures such as groins and bandal-like structures can provide valuable information on their influences on morphological processes in natural rivers.These structures usually used for bank protection and formation of deep navigation channel can locally create complex flow patterns,reduce flow velocities and also increase the flood levels.Most of the previous studies are focused on structures like groins under non-submerged flow condition.However,the recent demand of nature friendly low cost and sustainable methods for river bank protection and channel formation leads to the necessity of study different type of structures like bandal-like structures.In this context, this study investigates the flow characteristics and sediment transport process influenced by bandal-like structures through laboratory experiments.The experiments were carried out under live-bed scour condition with sediment supplied from the inlet for two submergence(non-submerged and submerged)conditions.The experimental measurements contribute to better understand the mechanism of deposition/erosion process around different type of hydraulic structures.The performance of bandal-like structures considering the erosion around the structures,the deposition near the bank and the formation of deep main channel show promising results compared with conventional structures such as groins(impermeable and permeable ones).     

A process-based model for sediment transport under various wave and current conditions

The purpose of this study is to investigate the capability of a newly developed process-based model for sediment transport under a wide variety of wave and current conditions.The model is based on the first-order boundary layer equation and the sediment advection-diffusion equation.In particular,a modified low Reynolds number k-e model is coupled to provide the turbulence closure.Detailed model verifications have been performed by simulating a number of laboratory experiments,covering a considerable range of hydrodynamic conditions such as sinusoidal waves,asymmetric waves and wave-current interactions.The model provides satisfactory numerical results which agree well with the measured results,including the time-averaged/dependent sediment concentration profiles and sediment flux profiles,as well as the time series of concentration at given elevations.The observed influences of wave orbital velocity amplitude,wave period and sediment grain size are correctly reproduced,indicating that the fundamental physical mechanisms of those processes are properly represented in the model.It is revealed that the present model is capable of predicting sediment transport under a wide range of wave and current conditions,and can be used to further study the morphodynamic processes in real coastal regions.     

The Impact of Snail (Bellamya aeruginosa) Bioturbation on Sediment Characteristics and Organic Carbon Fluxes in an Eutrophic Pond

A mesocosm experiment was conducted for 32 days in an eutrophic pond to study the effects of the bioturbation of the freshwater snail, Bellamya aeruginosa, on the benthic environment and to further understand cycling of organic carbon in water containing algal blooms. Chlorophyll‐a (chl‐a), phaeopigment, and organic matter contents of sediment, sediment oxygen consumption (SOC), and dissolved organic carbon (DOC) fluxes were determined on day 1, 16, and 32, respectively. The SOC decreased on day 16 and increased on day 32 significantly with the increase in snail density. DOC fluxes showed a net sediment uptake in all enclosures throughout the experiment. DOC fluxes in the high and mid density treatments were lower than those of the control. The concentrations of chl‐a and phaeopigment in the sediment increased significantly with snail density, indicating that the presence of snails reduced the biomass of phytoplankton. The results suggest that freshwater snails, B. aeruginosa, could influence the algal biomass (chl‐a) of small water bodies by their bioturbation effects on sediment characteristics and the fluxes of organic carbon.     

Macrobenthic community response to copper in Shelter Island Yacht Basin, San Diego Bay, California

We examined Cu contamination effects on macrobenthic communities and Cu concentration in invertebrates within Shelter Island Yacht Basin, San Diego Bay, California. Results indicate that at some sites, Cu in sediment has exceeded a threshold for “self defense” mechanisms and highlight the potential negative impacts on benthic faunal communities where Cu accumulates and persists in sediments. At sites with elevated Cu levels in sediment, macrobenthic communities were not only less diverse but also their total biomass and body size (individual biomass) were reduced compared to sites with lower Cu. Cu concentration in tissue varied between species and within the same species, reflecting differing abilities to “regulate” their body load. The spatial complexity of Cu effects in a small marina such as SIYB emphasizes that sediment-quality criteria based solely on laboratory experiments should be used with caution, as they do not necessarily reflect the condition at the community and ecosystem levels.     

The mobilisation of sediment by demersal otter trawls

The mobilisation of sediment by towed demersal fishing gears has been related to the release of nutrients, benthic infaunal mortality and the resuspension of phytoplankton cysts and copepod eggs. Hence, to understand the broader environmental and ecological implications of demersal fishing, it is important to be able to estimate accurately the amount of sediment put into the water column by towed gears.Experimental trials were carried out in the Moray Firth, Scotland, to measure the quantity of sediment remobilised by trawl gear components. It is demonstrated, for a given sediment type, that there is a relationship between the hydrodynamic drag of the gear element and the mass of sediment entrained behind it. A better understanding of this relationship and the hydrodynamic processes involved will lead to the development of accurate predictive models and aid the design of fishing gears of reduced impact.