Biological controls on dissolution of diatom frustules during their descent to the deep ocean: Lessons learned from controlled laboratory experiments

The majority of opal produced by diatoms dissolves during their sedimentation to the seafloor, but spatial and temporal variability of dissolution rates are large. Controlled laboratory experiments using live phytoplankton or phyto-detritus may help identify the different processes, including those that are biologically mediated or physico-chemically driven, that impact the dissolution of frustules and the aforementioned variability. Results of eight bSiO₂ dissolution experiments, seven of which were conducted at low temperatures (<6 °C) are presented within the context of earlier similar studies, and different phases of dissolution dynamics characterized. TEP concentration, aggregation and the physiological status of the diatoms determined the period during which diatoms may maintain the protective membrane that surrounds their frustule and effectively reduces or completely inhibits (lag period) dissolution for some time. Once diatoms loose the capability to maintain their protective membrane, bacterial activity compromises it. Physico-chemical dissolution, which depends on frustule structure and abiotic environmental conditions, begins once the protective membrane is damaged. The ability of diatoms to maintain their membrane, the bacterial composition and activity governing its degradation, and the physico-chemical dissolution dynamics of exposed frustules are all impacted by temperature. In our experiments instantaneous dissolution rates were not dependant on bSiO₂ concentration at low temperatures, although such a relationship was observed under otherwise identical conditions at 15 °C, implying that biotic factors rather than physico-chemical processes initially dominated dissolution at polar temperatures. Since inhibition of bSiO₂ dissolution at low temperatures was inhibited to a greater extent than organic matter degradation, we postulate that it was not reduced bacterial activity but the enhanced ability of diatoms to maintain their membrane and thus withstand microbial attack that caused the low initial dissolution rates at <6 °C. In situ, interactions between the different biotic and abiotic processes impacting dissolution combined with differences in sinking velocity of diatom aggregates and grazing effects could easily explain high spatial and temporal variability in the accumulation of diatoms on the seafloor. Simple calculations based on our experimental results suggest that Fragilariopsis kerguelensis, for example, would be appreciably more likely to reach the seafloor than Chaetoceros debilis if both grow at low growth rates, e.g. under growth limiting conditions. However, dissolution behavior of Chaetoceros debilis during sedimentation may differ under conditions where this species forms large blooms.     

Particle fluxes in San Pedro Basin, California: A four-year record of sedimentation and physical forcing

Moored sediment traps were deployed from January 2004 through December 2007 at depths of 550 and 800 m in San Pedro Basin (SPB), CA (33°33.0′N, 118°26.5′W). Additionally, floating sediment traps were deployed at 100 and 200 m for periods of 12-24 h during spring 2005, fall 2007, and spring 2008. Average annual fluxes of mass, particulate organic carbon (POC), ??¹³C_org, particulate organic nitrogen (PON), ??¹⁵N-PON, biogenic silica (bSiO₂), calcium carbonate (CaCO₃), and detrital material (non-biogenic) were coupled with climate records and used to examine sedimentation patterns, vertical flux variability, and organic matter sources to this coastal region. Annual average flux values were determined by binning data by month and averaging the monthly averages. The average annual fluxes to 550 m were 516±42 mg/m² d for mass (sdom of the monthly averages, n=117), 3.18±0.26 mmol C/m² d for POC (n=111), 0.70±0.05 mmol/m² d for CaCO₃ (n=110), 1.31±0.21 mmol/m² d for bSiO₂ (n=115), and 0.35±0.03 mmol/m² d for PON (n=111). Fluxes to 800 and to 550 m were similar, within 10%. Annual average values of ??¹³C_org at 550 m were −21.8±0.2‰ (n=108), and ??¹⁵N averages were 8.9±0.2‰ (n=95). The timing of both high and low flux particle collection was synchronous between the two traps. Given the frequency of trap cup rotation (4-11 days), this argues for particle settling rates ≥83 m/d for both high and low flux periods. The moored traps were deployed over one of the wettest (2004-2005, 74.6 cm rainfall) and driest (2006-2007, 6.6 cm) rain years on record. There was poor correlation (Pearson's correlation coefficient, 95% confidence interval) of detrital mass flux with: C_org/N ratio (r=0.10, p=0.16); ??¹⁵N (r=−0.19, p=0.02); and rainfall (r=0.5, p=0.43), suggesting that runoff does not immediately cause increases in particle fluxes 15 km offshore. ??¹³C_org values suggest that most POC falling to the basin floor is marine derived. Coherence between satellite-derived chlorophyll a records from the trap location (±9 km² resolution) and SST data indicates that productivity and export occurs within a few days of upwelling and both of these parameters are reasonable predictors of POC export, with a time lag of a few days to 2 weeks (with no time lag—SeaWiFS chlorophyll a and POC flux, r=0.25, p=0.0014; chlorophyll a and bSiO₂ flux, r=0.28, p=0.0002).     

Biogenic signature and ultra microfossils in ferromanganese nodules of the Central Indian Ocean Basin

Theories related to the precipitation mechanism of the metallic elements in marine manganese nodules have remained controversial between two schools of thoughts (1) chemical oxidation (abiotic origin) and (2) deposition of the metals through microbial enzymatic processes (biogenic origin). One of the most important evidence in support of the biogenic origin is the occurrence of fossilized microbes. However, well-documented literature in this regard is either lacking or very scanty in case of Indian Ocean nodules. Using high resolution FEG-SEM we have recorded various biogenic signatures and ultra microfossils in the ferromanganese nodule samples from Central Indian Ocean Basin (CIOB) that are presented in this paper. The microfossils are mostly protozoans belonging to varieties of bacteria, diatoms and foraminifera. Some of the features recorded in this study have perhaps never been reported before from any manganese nodules. The chemical compositions of these ultra microfossils indicate a high-level of manganese precipitation in and around them in comparison to the distant surrounding areas. While clumpy microbes are enriched with nickel, the rod shaped bacteria are rich in copper. Up to 4.70 wt.% nickel and 5.31 wt.% Cu have been recorded in the fossilized microbe bodies. The high abundance of biogenic features as well as microfossils in the ferromanganese nodules and their chemical compositions support arguments in favor of a dominant role of the microorganisms in the construction of the nodules of the CIOB.     

Contamination of marine biogenic habitats and effects upon associated epifauna

Habitat-forming organisms are frequently used as biomonitors in marine environments due to a widespread ability to accumulate toxic contaminants. Few studies, however, have considered the consequences of these accumulated contaminants on the abundant and diverse fauna associated with these habitats. In this review, we summarize research which has investigated the contamination of biogenic habitats (including seagrasses, macroalgae, ascidians, sponges and bivalve reefs) and the impact of this contamination on the habitat use, feeding behaviour and survival of associated epifauna. In many cases, ecological impacts upon epifauna are not simply predicted by levels of contamination in their habitat, but are determined by the foraging, feeding and reproductive behaviours of the inhabiting organisms. Thus, a thorough understanding of these ecological processes is essential in order to understand the effects of contaminants upon epifaunal communities. The scope of biomonitoring studies which assess the contamination of biogenic habitats should be expanded to include an assessment of potential effects upon associated epifauna. When combined with manipulative field experiments such an approach would greatly assist in our understanding of indirect effects of contaminants in these important benthic habitats.     

Estimating the contribution of the authigenic mineral component to the long-term reactive silica accumulation on the western shelf of the Mississippi River Delta

Previous studies have shown how biogenic silica particles undergo conversion to aluminosilicate phases in large tropical deltaic systems, thus affecting the world ocean budget of major seawater cations. This study tackles the important question of the silica budget in the coastal zone of the Mississippi River Delta, providing evidence for the role of biogenic silica diagenesis in this subtropical system from direct examination of individual diatom particles, sediment leachates and pore-water composition. The estimated reactive silica stored in the study area (5990 km²) is based on operational leaches that account for altered biogenic silica particles and other authigenic aluminosilicate phases in addition to fresh biogenic silica. Early diagenesis of silica in the delta front occurs mainly where more siliceous material is deposited. An inner-shelf area, where hypoxic conditions are found, significantly contributes to the formation of authigenic products of Si alteration. Data suggest that the limiting factor of silica alteration processes is the availability of detrital phases such as Al and Fe. The estimated total reactive silica accumulation in the study area is 1.45×10¹⁰ mol Si year⁻¹, representing ∼2.2% of the long-term bulk sediment accumulation. On the basis of a conservative appraisal, the authigenic mineral components account for ∼40% of the long-term reactive silica storage. This study shows that non-tropical deltaic systems are significantly more important sinks of silica than previously thought and that, where conditions are favourable, a consistent portion of reactive silica not leaving the shelf is stored within the delta in the form of authigenic components.     

Origin and distribution of surface sediments and human impacts on recent sedimentary processes. The case of the Amvrakikos Gulf (NE Ionian Sea)

The sedimentology of the floor of the Amvrakikos Gulf, a river influenced, semi-enclosed relatively shallow-silled embayment, lying along the northeastern Hellenic coast of the Ionian Sea (eastern Mediterranean Sea), is investigated with respect to its origin (terrigenous and/or biogenic), the prevailing oceanographic conditions and human interference. Nearshore (water depths approximately <10 m) sediments, especially along the northern margin of the Gulf, consist mostly of biogenic sands, as the result of water exchange between the freshwater lagoonal waters and the surface waters of the Gulf. An exception to this is the mouth area of the Arachthos River, which is dominated by the terrigenous riverine sediment influx. The offshore (water depths >10 m) bottom surficial sediments are fine-grained (silty and clayey) of terrigenous origin (>70%); this is attributed to the inter-seasonal, strong two-layer stratification of the water column in the Gulf which restricts benthic productivity by inhibiting the downward flux of surface eutrophic waters and the development of nearbed disoxic conditions in water depths >40 m. River damming has reduced also the riverine terrigenous sediment supply; this is more profound in the case of the Arachthos River where not only the deltaic evolution has been affected, but also the textural character of the seabed sediments of the mouth area has been altered; this is expected to influence the benthic communities of prodeltaic surficial sediment.     

Paleolimnological evidence of the response of the central Canadian treeline zone to radiative forcing and hemispheric patterns of temperature change over the past 2000 years

Instrumental climate records from the central Canadian treeline zone display a pattern of variation similar to general Northern Hemisphere temperature trends. To examine whether this general correspondence extends back beyond the instrumental record, we obtained a sediment core from Lake S41, a small lake in the Northwest Territories of Canada at 63°43.11′ N, 109°19.07′ W. A radiocarbon-based chronology was developed for the core. The sediments were analyzed for organic-matter content by loss-on-ignition (LOI), biogenic-silica content (BSi), and chironomid community composition to reconstruct July air temperature and summer water temperature. The paleolimnological records were compared with records of atmospheric CO₂ concentration, solar variability, and hemispheric temperature variations over the past 2000 years. The results of the analyses suggest that widely-documented long-term variations in Northern Hemisphere temperature associated with radiative forcing, namely the cooling following the medieval period during the Little Ice Age (LIA), and twentieth century warming, are represented in the central Canadian treeline zone. There is also evidence of a brief episode of warming during the eighteenth century. As evidenced by LOI and BSi, the twentieth century warming is typified by increased lake productivity relative to the LIA. Depending upon the measure, the increased productivity of the twentieth century nearly equals or exceeds that of any other period in the past 2000 years. In contrast, the rate of chironomid head capsule accumulation decreased and remained low during the twentieth century. Although the chironomid-inferred temperature reconstructions indicate cooling during the LIA, they present no evidence of greatly increased temperatures during the twentieth century. Warming during the twentieth century might have enhanced lake stratification, and the response of the chironomid fauna to warming was attenuated by decreased oxygen and lower temperatures in the hypolimnion of the more stratification-prone lake.

淡水珍珠中文石球粒的发现与成珠机制探讨

长期以来,珍珠的成因理论很少涉及在超显微镜结构研究基础上的具体的珍珠形成机制。珍珠与贝壳珍珠层具有较多的相似性,但也存在很多不同。本文在对AFM下首次观察到的淡水珍珠表面纳米级的六方最紧密堆积文石球粒的研究基础上,结合XRD分析对珍珠内部矿物成分差异的研究,试图在贝壳珍珠层成因理论的基础上探讨淡水珍珠的成珠机制。本文将珍珠的形成过程初步归纳为碳酸钙凝胶的形成,碳酸钙球粒的形成,矿物相的转变和后继生长四个阶段。     

海水化学演化对生物矿化的影响综述

显生宙非骨屑碳酸盐矿物经历了文石海和方解石海的交替,主要造礁生物和沉积物生产者的骨骼矿物与非骨屑碳酸盐矿物具有同步变化的趋势。这种长期的变化趋势可以用海水化学Mg/Ca摩尔比的变化来解释。流体包裹体、同位素和微量元素等证据也证实了海水化学在地质历史中经历过剧烈的变化。虽然生物诱导矿化和生物控制矿化的相对重要性一直存在争议,但古生物地层记录和人工海水养殖实验结果都表明,海水化学演化对生物矿化有重要的影响,体现在造礁生物群落的兴衰、生物起源时对骨骼矿物类型的选择以及微生物碳酸盐岩在地质历史中的分布等。这些为研究前寒武纪海水化学演化、古气候和古环境的重建、同位素地层对比以及碳酸盐的沉积和成岩等问题提供了新的思路。     

生物成因与无机成因文石的FTIR光谱区别

对16种贝壳交叉页片层中生物成因文石的FT IR谱进行测量,并与无机成因文石进行对比和统计分析后,首次发现生物成因与无机成因文石的FT IR光谱有明显可区分的特征,生物成因文石2ν带(面外弯曲振动)频率平均值为863.4 cm-1,而无机成因文石该带的平均值为855.5 cm-1,两者频率位移达7.9 cm-1。因此文石的2ν带可作为指纹带鉴别生物和无机成因文石。