Aequorea taiwanensis n. sp. (Hydrozoa, Leptomedusae) and mtCOI sequence analysis for the genus Aequorea

Aequorea taiwanensis, a new hydrozoan species from the Taiwan Strait was described using morphological and molecular characteristics. Both morphological and mitochondrial cytochrome oxidase subunit I (mtCOI) data supported A. taiwanensis n. sp. as a valid species. Sequence divergence and genetic distance of A. taiwanensis n. sp., A. papillata and A. conica were analysed based on the mtCOI gene sequences. The mtCOI sequences from these three species of the genus Aequorea showed high variation frequency, with sequence divergences ranging from 9.10% to 11.9%, and pairwise genetic distances ranging from 0.097 to 0.130. MtCOI sequence analysis provided diagnostic molecular systematic characteristics for accurate identification and discrimination of the species of Aequorea or their populations, and will be used to resolve evolutionary relationships among them.It was suggested that 10%—20% pairwise mtCOI sequence differences indicated the specieslevel divergence among congeneric species in the Hydromedusae.     

鳜鱼(Siniperca chuatsi)β-肌动蛋白基因cDNA全序列与5′侧翼区的克隆与分析

采用RT-PCR及RACE法,分离、克隆鳜鱼β-肌动蛋白基因cDNA全序列,再用基因组步行法(Genome Walker)克隆鳜鱼β-肌动蛋白基因5'调控区.序列分析结果表明,鳜鱼β-肌动蛋白基因全长1897bp,其中5'-UTR长94bp,3'-UTR长675bp,编码区长1128bp,编码375个氨基酸.将所得序列与其它动物类群的β-肌动蛋白基因序列进行比较分析显示,鱼类、两栖类、鸟类、哺乳类等不同类群脊椎动物B-肌动蛋白氨基酸序列同源性均在96%以上,说明该基因在生物进化过程中高度保守.通过鳜鱼与其它脊椎动物β-肌动蛋白基因的核苷酸序列构建的进化树显示,脊椎动物β-肌动蛋白聚类成3个分支,鱼类β-肌动蛋白基因形成一个独立的分化群,说明鱼类β-肌动蛋白基因起源于-个共同祖先.克隆得到的鳜鱼β-肌动蛋白基因5'侧翼序列长1399bp,对其进行序列分析,在其起始密码字ATG上游200bp范围内发现含有CAAT box、CC(A/T)6GG(CArG box)、TATA box对转录调控起重要作用的顺式元件,同时在侧翼区也发现含有GC box、MYOD、YY1、SP1、GATA等多个潜在调控元件.鳜鱼β-肌动蛋白基因5'侧翼序列的克隆成功,为今后转基因鳜鱼的研究工作奠定了基础.     

基于时空特征分析技术的烤烟GIS系统

本文分析了烤烟信息系统对烤烟种植、生产和销售的重要作用,构建系统的必要性和应用需求,并在.NET框架下,利用ArcEngine和ArcSDE,以C/S结构实现该系统。介绍了系统的结构和功能:包括地图服务、烤烟信息查询统计和烤烟地理信息时空分析和决策支持。同时,讨论了实现该系统的关键技术,包括时空数据库、时空序列的烤烟时空事件分析模型、Web服务等。时空数据包括业务数据和行政区数据两类,对于行政区,除了需要记录行政区的生命周期外,还需记录行政区变更事件,通过行政区变更事件表查询行政区撤消、合并等事件后的业务数据,进而实现时空分析。系统的实现对促进烤烟生产信息化有重积极意义。     

关于非齐次马氏链的强极限定理

主要研究了非齐次马氏链的强极限定理.首先应用鞅差序列收敛定理给出了关于非齐次马氏链的任意k元函数一类平均值的极限定理.最后得到一系列相关状态序偶出现频率的推论.     

Cloning and sequence analysis of a full-length cDNA of <Emphasis Type="Italic">SmPP1cb</Emphasis> encoding turbot protein phosphatase 1 beta catalytic subunit

Reversible protein phosphorylation, catalyzed by protein kinases and phosphatases, is an important and versatile mechanism by which eukaryotic cells regulate almost all the signaling processes. Protein phosphatase 1 （PP1） is the first and well-characterized member of the protein serine/threonine phosphatase family. In the present study, a full-length cDNA encoding the beta isoform of the catalytic subunit of protein phosphatase l（PPlcb）, was for the first time isolated and sequenced from the skin tissue of flatfish turbot Scophthalmus maximus, designated SmPPlcb, by the rapid amplification of cDNA ends （RACE） technique. The cDNA sequence of SmPPlcb we obtained contains a 984 bp open reading frame （ORF）, flanked by a complete 39 bp 5＇ untranslated region and 462 bp 3＇ untranslated region. The ORF encodes a putative 327 amino acid protein, and the N-terminal section of this protein is highly acidic, Met-Ala-Glu-Gly-Glu-Leu-Asp-Val-Asp, a common feature for PP1 catalytic subunit but absent in protein phosphatase 2B （PP2B）. And its calculated molecular mass is 37 193 Da and pI 5.8. Sequence analysis indicated that, SmPPlcb is extremely conserved in both amino acid and nucleotide acid levels compared with the PPlcb of other vertebrates and invertebrates, and its Kozak motif contained in the 5＇UTR around ATG start codon is GXXAXXGXXATGG, which is different from mammalian in two positions A6 and G3, indicating the possibility of different initiation of translation in turbot, and also the 3＇UTR of SmPPlcb is highly diverse in the sequence similarity and length compared with other animals, especially zebraf＇lsh. The cloning and sequencing of SmPPlcb gene lays a good foundation for the future work on the biological functions of PP1 in the flatfish turbot.     

Genetic diversity analysis with ISSR PCR on green algae Chlorella vulgaris and Chlorella pyrenoidosa

In the present study, genetic polymorphism and diversity in unicellular clones of Chlorella vulgaris Beijerinck and Chlorella pyrenoidosa Chick were studied with Inter Simple Sequence Repeats PCR (ISSR PCR). Samples including four clones of C. vulgaris and three clones of C. pyrenoidosa were purified by single-clone-choice method. For four C. vulgaris unicellular clones, the total number of the bands scored for 18 primers was 298; and the number of the polymorphic bands was 118, of which 39.6% were polymorphic. The size of PCR products ranged from 200 to 2 500 bp. The total number of bands scored for 18 primers, the number of polymorphic bands and the percentage of three C. pyrenoidosa unicellular clones was 194.83 and 30.8%, respectively. POPGENE analysis show that the average Nei genetic diversity (h *) and Shannon index of diversity (I *) in the four C. vulgaris unicellular clones was 0.2181 and 0.3208, respectively, which is slightly higher than those of the three C. pyrenoidosa unicellular clones (0.190 3 and 0.274 8), which agreed with the percentage of polymorphic bands in the mixed samples of the two species. The results suggest that ISSR is a useful method to Chlorella for intra-species genetic analysis.     

变形观测数据时间序列建模中的几个问题

针对在变形观测数据时间序列建模中所遇到的问题,对变形观测数据时间序列建模中的数据预处理、模型选择、模型定阶与系统稳定性检验等问题进行了研究,提出了分析数据趋势项提取的AR模型方法,编写了C语言计算程序,实现了样条函数插值方法、周期项提取的差值法,建立ARMA分析模型,对变形预测数据与实际观测数据进行了比较.结果表明:该方法的正确性以及时间序列分析方法在变形数据处理与分析中的适用性与可行性.     

1986—2017年舟山群岛不同主体功能海岛岸滩变化特征分析

基于逐年30 m分辨率的岸滩遥感监测数据集(1986—2017年),开展舟山群岛不同主体功能海岛岸滩的时空演化特征分析.结果表明,在1986—2017年期间,受剧烈围填海活动的影响,舟山群岛的大量水域(152 km2)和潮滩(18 km2)被围填成陆地,岸滩不断向海推进,政策是岸滩总体变化的主要驱动因素.不同海岛主体功...     

长石莼(缘管浒苔)(Ulva linza)rbcL全长基因的克隆与序列分析

克隆分离了长石莼(缘管浒苔)光合作用第一关键酶Rubisco大亚基全长基因(rbcL)。首先应用PCR和RT-PCR方法扩增rbcL大片段DNA序列和大片段cDNA序列,结果表明,获得的2个克隆序列完全相同,该rbcL大片段基因不存在内含子。其次应用基因步移方法分别对rbcL基因的5′上游未知序列和3′下游未知序列进行扩增,在此基础上,将3个片段序列进行拼接,获得了rbcL全长基因序列(NCBI登陆号:DQ813497)。序列全长2124bp,其中编码区序列长1425bp,为单外显子基因,编码474个氨基酸;5′非翻译区序列长225bp,转录起始位点为位于翻译起始密码子ATG上游第47个核苷酸G,在距离转录起始位点-9bp—-48bp的范围内有推测的类似原核生物的启动子序列(-10区:TAAAAT、-35区:TTGAAA);3′非翻译区序列长474bp,在距离转译终止密码子TAA下游54—98bp处有一段较长的回文序列,可形成一个22bp的茎结构。密码子偏好性分析结果表明,长石莼(缘管浒苔)rbcL基因偏向使用第三位核苷酸碱基为A和T的密码子。     

环境演变研究时间序列的建立方法评述

对环境演变时间序列建立的几种主要方法的纪年原理、应用状况及应用的优点、范围、局限性进行了阐述和比较，包括长寿命宇宙成因核素在内的同位素纪年方法主要判别第四纪以来大时间尺主的沉积物的地质年龄，且能很好地应用于全球变化的研究，但百余年来沉积物的年龄及侵蚀历史变化的研究只能通过^210Pbex、^137Cs等半衰期相对较短的核素来进行；指出^210Pbex可望在现代流域侵蚀环境演变以及其效应评价的研究中获得新的突破。