The tidal flushing of multiple-loop animal burrows

Tidal flushing of animal burrows in mangrove swamps provides an effective and important mechanism for transport of salt and other soluble substances. The burrows have complex morphologies consisting of multiple loops. Using established computational modelling techniques, burrow geometries were simulated from characteristic burrow dimensions and the effect of multiple loops on flushing is studied. The computational models show that flushing is enhanced in multiple-loop burrows as upper loops can be completely evacuated, increasing the volume of burrow water removed. The models indicate that there may be a depth limit to which flushing occurs in complex burrow structures. Periscope loops extend further than one characteristic loop depth and are shown to affect the flushing of burrows if the surface-water plume penetrates to their lower depth. Periscope loops with surface openings on the downstream side of the burrow, relative to the tidal inundation, most frequently experience this condition and thus have a great impact on burrow flushing. Field measurements of salinity agree with the hypothesis that there is a depth limit of flushing for complex burrows that is independent of burrow salinity, and suggest a value of 30–35 cm. The measurements also support the suggestion that significant flushing of burrows occurs within a single tidal event. An experiment considered the movement of animals across the interface created by low-salinity surface water and high-salinity burrow water after a partial flushing event. The motion enhances the effective diffusion coefficient of salt by a factor of at least 10², as compared with free diffusion of salt in water, resulting in a more even distribution of dissolved salt in the burrow water between tidal inundations. This distribution may lead to an increase in the depth to which flushing occurs during subsequent inundations.     

利用TOPEX卫星高度计资料分析台湾岛周边海域巨浪和大风特征

卫星高度计实现了对全球性或区域性的海洋参量的实时监测,TOPEX卫星高度计提供了迄今为止时间序列最长、数据质量最高的全球海面风速和有效波高的同步观测资料。利用TOPEX卫星高度计资料,分析了有效波高4m以上的巨浪在台湾岛周边海域的时空分布特征,结果表明台湾岛周边海域巨浪的分布具有明显的季节特征。每年平均有效波高最大值大多数出现在夏季,春季是1a中有效波高最小的季节,而秋季和冬季是巨浪出现频率最高的季节。波高大于6m的巨浪大都出现在台湾岛东部及东北部海域,在南部海域出现较少。     

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SELFE: A semi-implicit Eulerian–Lagrangian finite-element model for cross-scale ocean circulation

Unstructured-grid models grounded on semi-implicit, finite-volume, Eulerian–Lagrangian algorithms, such as UnTRIM and ELCIRC, have enjoyed considerable success recently in simulating 3D estuarine and coastal circulation. However, opportunities for improving the accuracy of this type of models were identified during extensive simulations of a tightly coupled estuary–plume–shelf system in the Columbia River system. Efforts to improve numerical accuracy resulted in SELFE, a new finite-element model for cross-scale ocean modeling. SELFE retains key benefits, including computational efficiency of existing semi-implicit Eulerian–Lagrangian finite-volume models, but relaxes restrictions on grids, uses higher-order shape functions for elevation, and enables superior flexibility in representing the bathymetry. Better representation of the bathymetry is enabled by a novel, “localized” vertical grid that resembles unstructured grids. At a particular horizontal location, SELFE uses either S coordinates or SZ coordinates, but the equations are consistently solved in Z space. SELFE also performs well relative to volume conservation and spurious oscillations, two problems that plague some finite-element models. This paper introduces SELFE as an open-source code available for community use and enhancement. The main focus here is on describing the formulation of the model and on showing results for a range of progressively demanding benchmark tests. While leaving details to separate publications, we also briefly illustrate the superior performance of SELFE over ELCIRC in a field application to the Columbia River estuary and plume.     

Analysis of stochastic characteristics of the Benue River flow process

Stochastic characteristics of the Benue River streamflow process are examined under conditions of data austerity. The streamflow process is investigated for trend, non-stationarity and seasonality for a time period of 26 years. Results of trend analyses with Mann-Kendall test show that there is no trend in the annual mean discharges. Monthly flow series examined with seasonal Kendall test indicate the presence of positive change in the trend for some months, especially the months of August, January, and February. For the stationarity test, daily and monthly flow series appear to be stationary whereas at 1%, 5%, and 10% significant levels, the stationarity alternative hypothesis is rejected for the annual flow series. Though monthly flow appears to be stationary going by this test, because of high seasonality, it could be said to exhibit periodic stationarity based on the seasonality analysis. The following conclusions are drawn： （1） There is seasonality in both the mean and variance with unimodal distribution. （2） Days with high mean also have high variance. （3） Skewness coefficients for the months within the dry season period are greater than those of the wet season period, and seasonal autocorrelations for streamflow during dry season are generally larger than those of the wet season. Precisely, they are significantly different for most of the months. （4） The autocorrelation functions estimated ＂over time＂ are greater in the absolute value for data that have not been deseasonalised but were initially normalised by logarithmic transformation only, while autocorrelation functions for i = 1, 2 365 estimated ＂over realisations＂ have their coefficients significantly different from other coefficients.     

具有不同到达率的带有启动时间及不耐烦策略的多级适应性休假M^X/G/1排队

研究了具有不同到达率的带有启动时间及不耐烦策略的多级适应性休假M^X/G/1排队模型,通过嵌入马尔可夫链方法推导出稳态队长的母函数、等待时间的LST（先到先服务规则）,并验证了稳态队长和稳态等待时间具有随机分解性,而且给出了忙期、全忙期及在线期均值。     

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Sequence analysis and quantitative detection of Norwalk-like viruses in cultured oysters of China

We isolated 4 Norwalk-like viruses (NLVs) contaminated oysters from 33 Chinese oysters collected from local commer-cial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase (RdRp) region of NLVs genomes with RT-PCR, the open reading frame 1 (ORF1) of the RdRp was sequenced and subjected to multiple-sequence alignment. The re-suits showed that NLVs in the four isolates belong to genogroup Ⅱ. The sequence comparison showed that the similarity between four Chinese oyster isolates were higher than 99.0%, which indicated that NLVs prevalent in close areas have high homogeneity in genome sequences. In addition, the most conserved sequences between diverse NLVs were used to design primers and TaqMan probes, then the real-time quantitative PCR assay was performed. According to the standard curve of GII NLVs, the original amounts (copies) of NLVs in positive patient's fecal isolate, positive Japanese oyster isolate, and the Chinese oyster isolate were 8.9×108, 1.25×108 and 4.7×101 respectively. The detecting limit of NLVs was 1×101 copies. This study will be helpful for routine diagnosis of NLVs pathogens in foods and thus for avoiding food poisoning in the future.     

1986—2017年舟山群岛不同主体功能海岛岸滩变化特征分析

基于逐年30 m分辨率的岸滩遥感监测数据集(1986—2017年),开展舟山群岛不同主体功能海岛岸滩的时空演化特征分析.结果表明,在1986—2017年期间,受剧烈围填海活动的影响,舟山群岛的大量水域(152 km2)和潮滩(18 km2)被围填成陆地,岸滩不断向海推进,政策是岸滩总体变化的主要驱动因素.不同海岛主体功...