SELFE: A semi-implicit Eulerian–Lagrangian finite-element model for cross-scale ocean circulation

Unstructured-grid models grounded on semi-implicit, finite-volume, Eulerian–Lagrangian algorithms, such as UnTRIM and ELCIRC, have enjoyed considerable success recently in simulating 3D estuarine and coastal circulation. However, opportunities for improving the accuracy of this type of models were identified during extensive simulations of a tightly coupled estuary–plume–shelf system in the Columbia River system. Efforts to improve numerical accuracy resulted in SELFE, a new finite-element model for cross-scale ocean modeling. SELFE retains key benefits, including computational efficiency of existing semi-implicit Eulerian–Lagrangian finite-volume models, but relaxes restrictions on grids, uses higher-order shape functions for elevation, and enables superior flexibility in representing the bathymetry. Better representation of the bathymetry is enabled by a novel, “localized” vertical grid that resembles unstructured grids. At a particular horizontal location, SELFE uses either S coordinates or SZ coordinates, but the equations are consistently solved in Z space. SELFE also performs well relative to volume conservation and spurious oscillations, two problems that plague some finite-element models. This paper introduces SELFE as an open-source code available for community use and enhancement. The main focus here is on describing the formulation of the model and on showing results for a range of progressively demanding benchmark tests. While leaving details to separate publications, we also briefly illustrate the superior performance of SELFE over ELCIRC in a field application to the Columbia River estuary and plume.     

Analysis of stochastic characteristics of the Benue River flow process

Stochastic characteristics of the Benue River streamflow process are examined under conditions of data austerity. The streamflow process is investigated for trend, non-stationarity and seasonality for a time period of 26 years. Results of trend analyses with Mann-Kendall test show that there is no trend in the annual mean discharges. Monthly flow series examined with seasonal Kendall test indicate the presence of positive change in the trend for some months, especially the months of August, January, and February. For the stationarity test, daily and monthly flow series appear to be stationary whereas at 1%, 5%, and 10% significant levels, the stationarity alternative hypothesis is rejected for the annual flow series. Though monthly flow appears to be stationary going by this test, because of high seasonality, it could be said to exhibit periodic stationarity based on the seasonality analysis. The following conclusions are drawn： （1） There is seasonality in both the mean and variance with unimodal distribution. （2） Days with high mean also have high variance. （3） Skewness coefficients for the months within the dry season period are greater than those of the wet season period, and seasonal autocorrelations for streamflow during dry season are generally larger than those of the wet season. Precisely, they are significantly different for most of the months. （4） The autocorrelation functions estimated ＂over time＂ are greater in the absolute value for data that have not been deseasonalised but were initially normalised by logarithmic transformation only, while autocorrelation functions for i = 1, 2 365 estimated ＂over realisations＂ have their coefficients significantly different from other coefficients.     

具有不同到达率的带有启动时间及不耐烦策略的多级适应性休假M^X/G/1排队

研究了具有不同到达率的带有启动时间及不耐烦策略的多级适应性休假M^X/G/1排队模型,通过嵌入马尔可夫链方法推导出稳态队长的母函数、等待时间的LST（先到先服务规则）,并验证了稳态队长和稳态等待时间具有随机分解性,而且给出了忙期、全忙期及在线期均值。     

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Sequence analysis and quantitative detection of Norwalk-like viruses in cultured oysters of China

We isolated 4 Norwalk-like viruses (NLVs) contaminated oysters from 33 Chinese oysters collected from local commer-cial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase (RdRp) region of NLVs genomes with RT-PCR, the open reading frame 1 (ORF1) of the RdRp was sequenced and subjected to multiple-sequence alignment. The re-suits showed that NLVs in the four isolates belong to genogroup Ⅱ. The sequence comparison showed that the similarity between four Chinese oyster isolates were higher than 99.0%, which indicated that NLVs prevalent in close areas have high homogeneity in genome sequences. In addition, the most conserved sequences between diverse NLVs were used to design primers and TaqMan probes, then the real-time quantitative PCR assay was performed. According to the standard curve of GII NLVs, the original amounts (copies) of NLVs in positive patient's fecal isolate, positive Japanese oyster isolate, and the Chinese oyster isolate were 8.9×108, 1.25×108 and 4.7×101 respectively. The detecting limit of NLVs was 1×101 copies. This study will be helpful for routine diagnosis of NLVs pathogens in foods and thus for avoiding food poisoning in the future.     

GNSS变形监测网短基线时间序列噪声特性分析

利用时间跨度为5 a的GNSS短基线时间序列对噪声特性进行分析,发现长周期噪声分量(随机游走噪声)。选取最优噪声模型,评估不同噪声模型对测站周期振幅和线性速度估值的影响。结果表明,短基线时间序列中有色噪声应顾及闪烁噪声和随机游走噪声,对于表现出随机游走噪声的分量,可能与测站的真实运动有关;假设只有白噪声时求得的速度估值与最优噪声模型下求得的速度估值存在0.4～0.6 mm/a的偏差,对周期振幅的影响可以忽略。     

1978年以来广州市居民职住地选择行为时空特征与影响因素的代际差异

1978年以来,中国体制改革重塑了个体日常时空行为及其在生命过程中的活动轨迹,但鲜有文献解析长时间序列下不同代际群体对职住政策调整做出的响应及其代际差异。基于时间地理学视角与代际差异理论,将广州市微观个体职住地变动历程与代际问题相结合,利用问卷调查分析1988年和1998年居民职住制度改革前后,不同代际居民职住地变迁行为时空特征及其影响因素的结构性差异。结果发现：① 在居住地和就业地变迁方向方面,各代际居民住房迁出地主要集中于老城区,就业地变迁围绕两个城市中心,形成由老城核心地域向内城、近郊扩散的变迁过程。② 职住地距离变化方面,居民平均职住距离由1988年之前的4.91 km增至1998年之后的6.46 km,20世纪90年代出生居民（简称90后,下同）的职住分离度大于其他群体。③ 在职住地变迁率方面,住房商品化和就业社会化极大地增加了居民职住地选择自由度,60后和70后在1998年之后的迁居率分别为113.16%与112.33%,就业地变迁率分别为148.68%与197.26%,二者都远高于住房改革前的比例。④ 驻留时长方面,职住自由化使得驻留时长明显缩短。60后变化最为明显,该群体在一个居住地的居住时长由1988年以前的14.43年缩至1998年以后的5.43年,就业地驻留时长由12.43年降至3.95年;80后与90后在1998年以后的职住地驻留时长明显较短,70后相对较长。⑤ 能力、组合及权威制约中的房价、婚姻状况、学历、福利分房及下岗等因素对职住地变迁表现出明显代际差异,因子女上学及同事关系等组合制约对就业地变迁无显著群体差别。     

A surface network based method for studying urban hierarchies by night time light remote sensing data

Urban hierarchies are closely related to economic growth, urban planning and sustainable urban development. Due to the limited availability of reliable statistical data at fine scales, most existing studies on urban hierarchy characterization failed to capture the detailed urban spatial structure information. Previous studies have demonstrated that night time light data are correlated with many urban socio-economic indicators and hence can be used to characterize urban hierarchies. This paper presents a novel method for studying urban hierarchies from night time light data. Night time light data were first conceptualized as continuous mathematical surfaces, termed night time light surfaces. From the morphology of these surfaces the corresponding surface networks were derived. Hereafter, a night time light intensity (NTLI) graph was defined to describe the morphology of the surface network. Then, structural similarity between the night time light surfaces of any two different cities was calculated via a threshold-based maximum common induced graph searching algorithm. Finally, urban hierarchies were defined on the basis of the structural similarities between different cities. Using the 2015 annual NPP-VIIRS night time light data, the urban hierarchies of 32 major cities in China were successfully examined. The results are highly consistent with the reference urban hierarchies.     

Stochastic bivariate time series models of waves in the North Sea and their application in simulation-based design

In this paper, we present and evaluate three long-term wave models for application in simulation-based design of ships and marine structures. Designers and researchers often rely on historical weather data as a source for ocean area characteristics based on hindcast datasets or in-situ measurements. The limited access and size of historical datasets reduces repeatability of simulations and analyses, making it difficult to assess the sampling variability of performance and loads on marine vessels and structures. Markov, VAR and VARMA wave models, producing independent long-term time series of significant wave height (H_s) and spectral peak period (T_p), is presented as possible solutions to this problem. The models are tested and compared by addressing how the models affect interpretation of design concepts and the ability to replicate statistical and physical characteristics of the wave process. Our results show that the VAR and VARMA models perform sufficiently in describing design performance, but does not capture the physical process fully. The Markov model is found to perform worst of the tested models in the applied tests, especially for measures covering several consecutive sea states.     

Experimental study on a sampling technique based on a freeze-sediments valve for deep-sea microorganism

Deep-sea microorganism research has become a hot topic in life science, owing to its special value in high pressure and low temperature environment. If not kept the in-situ low temperature and high pressure, it will cause the microorganism to lose its activity and lead to a waste of resources. A freeze-sediments valve presents a promising solution to maintain the low temperature and high pressure in situ, improve the success rate of sampling and shorten the sampling time. A series of experiments were conducted to characterize the freeze-sediments valve, including the sampling time without leakage, adaptation to different sediments and the effect of the length, etc. Most important of all, temperature change of sediments is observed in all experiments. Experimental results indicated that the freeze-sediments valve was formed in 5 min without leakage and the freeze-sediments valve could be applied to different sediments without limitations on sediments type and mineral content. Considering the pressure retaining capacity and formation time of freeze-sediments valve, it was found that the freeze-sediments valve with a length of 60–80 mm has good pressure retaining capacity whose value was 41.3–48.4 Mpa and short formation time which was 5 min. Precooling the sampler could be used to shorten the sampling time in the actual environment application. This sampling technique can play a vital role in maintaining in-situ low temperature at −2 to −4 ° Celsius in all the experiments. According to the tests, the sampling technique based on the freeze-sediments valve had the potential to solve the problem of keeping in-situ temperature, low sampling success rate and long sampling time in the future.