高通量测序分析北仑河口红树林潮间带底栖真核生物分布

为了解红树林不同潮位沉积物中底栖真核生物群落分布,基于18S rRNA基因采用高通量测序方法分析了广西北仑河口陆缘、林中和海缘3个潮位红树林沉积物中底栖生物群落结构。结果表明,北仑河口潮间带红树林沉积物中底栖生物多样性丰富,Shannon-Wiener指数变化范围在6. 08～6. 73之间; PCA分析表明潮间带中底栖生物群落差异较大,陆缘红树林中扁形动物、节肢动物和软体动物相对丰度较高,林中区域中纤毛虫、环节动物和轮虫相对丰度较高,海缘红树林中硅藻相对丰度较高;红树林中主要OTUs有桡足类的太平洋纺锤水蚤(Acartia pacifica)、硅藻类的海链藻(Thalassiosira sp.)、纤毛虫类的前管虫(Prorodon teres)、多毛类的小头虫(Capitella sp.)。高通量测序方法能较全面反映红树林区微型/小型底栖生物群落,研究结果为丰富红树林底栖生物群落研究和解析底栖生物在红树林生态系统发挥的作用提供基础数据。     

Microbial diversity in the sediments of the southern Mariana Trench

Microbial diversity in the abyssal sediments beneath the seafloor of 30,94,and 151cm near the southern end of the Mariana Trench was analyzed in the Illumina HiSeq 2500 platform.Results show that the microbial populations were dominated by bacteria but merely no archaea were identifi ed at the three depths.In the bacterial community,Proteobacteria and Firmicutes dominated the total taxon tags,followed by Bacteroidetes,Actinobacteria,Planctomycetes,Cyanobacteria,and Chloroflexi,which together account for over 99%of the total population.Similar to that in the seawater in the trench,the operational taxonomic units(OTUs)belonging to Gammaproteobacteria from the sediment samples showed high abundance.However,common bacterial OTUs in the water of the trench including Nitrospirae and Marinimicrobia were hardly found in the sediments from the southern Mariana Trench or the hadal region.Therefore,this study documented for the first time the compositions of microbial diversity in the trench sediments,revealed the difference in microbial diversity in water and sediment of the trench and will enrich the knowledge on the microbial diversity in the abyssal areas.     

Relationships between body weight and other morphological traits in young sea cucumbers Apostichopus japonicas

Correlation, multiple regression, and path analyses were used to investigate the relationships between body weight and three other morphological traits in juvenile Japanese sea cucumbers Apostichopus japonicus . We measured live body weight (BW), body length (BL), numbers of papillae (NP), and numbers of tube feet (NF) at 60, 80, 100, and 130 days post-hatching (dph). We calculated path correlation coefficients, correlation indices ( R 2 ), and coefficients of determination with BW as the dependent variable and the other morphological traits as independent variables. The coefficient of variation for BW was high across all age groups, and all measured morphological traits were significantly correlated ( P < 0.01). BL had the greatest direct eff ect on BW across all age groups (60 dph, 0.526;80 dph, 0.404;100 dph, 0.620;and 130 dph, 0.681), while NF had the greatest indirect eff ect on BW across all age groups (60 dph, 0.528;80 dph, 0.452;100 dph, 0.666;and 130 dph, 0.603). Regression analyses between morphological traits and BW indicated that R 2 was greater than 0.85 only in the 100-dph specimens. The indirect eff ects of the other measured morphological traits on BW were age-dependent. The optimal regression equations, as determined with stepwise regression, were, for 60-dph specimens: BW 60 =10 (-3.04+0.092BL+0.014NP+0.014NF)( R 2 =0.632);for 80-dph specimens: BW 80 =10 (- 3.035+0.056BL+0.017NP+0.02NF)( R 2 =0.686);for 100-dph specimens: BW 100 =10 (- 3.742+0.069BL+0. 633 · lg (NP)+0. 464 · lg (NF))( R 2 =0.893);and for 130-dph specimens: BW 130 =10 (- 2.472+0.065BL+0.012NP)( R 2 =0.774). Our work clarified the correlation between various morphological traits and body weight of a commercially-important sea cucumber species ( A . japonicus ). Our predictive models for body weight might be useful for the aquaculture and selective breeding of A . japonicus . These models might also provide theoretical support for the indirect selection of traits that are difficult to select directly.     

Microbial diversity in Huguangyan Maar Lake of China revealed by high-throughput sequencing

Huguangyan Maar Lake is a typical maar lake in the southeast of China. It is well preserved and not disturbed by anthropogenic activities. In this study, microbial community structures in sediment and water samples from Huguangyan Maar Lake were investigated using a high-throughput sequencing method. We found significant differences between the microbial community compositions of the water and the sediment. The sediment samples contained more diverse Bacteria and Archaea than did the water samples. Actinobacteria, Betaproteobacteria, Cyanobacteria, and Deltaproteobacteria predominated in the water samples while Deltaproteobacteria, Anaerolineae, Nitrospira, and Dehalococcoidia were the major bacterial groups in the sediment. As for Archaea, Woesearchaeota (DHVEG-6), unclassified Archaea, and Deep Sea Euryarchaeotic Group were detected at higher abundances in the water, whereas the Miscellaneous Crenarchaeotic Group, Thermoplasmata, and Methanomicrobia were significantly more abundant in the sediment. Interactions between Bacteria and Archaea were common in both the water column and the sediment. The concentrations of major nutrients (NO^3-, PO4^3-, SiO3^2- and NH4^+) shaped the microbial population structures in the water. At the higher phylogenetic levels including phylum and class, many of the dominant groups were those that were also abundant in other lakes;however, novel microbial populations (unclassified) were often seen at the lower phylogenetic levels. Our study lays a foundation for examining microbial biogeochemical cycling in sequestered lakes or reservoirs.     

The evolution of the spatial-temporal patterns of global energy security since the 1990s

Journal of Geographical Sciences - In this study, we developed an energy security evaluation model (ESEM) from three dimensions, energy supply-transport security, safety of energy utilization, and...     

南海沉积物细菌胞外蛋白酶在家族水平上的多样性

海洋产蛋白酶细菌及其分泌的胞外蛋白酶在降解有机氮以推动海洋氮循环进行方面发挥着重要作用,但目前对这二者多样性的认识非常有限。本研究自南海沉积物中筛选得到90株产蛋白酶细菌,并通过N-端氨基酸序列,分析了其胞外蛋白酶在家族水平上的多样性。16S rRNA基因序列分析的结果表明,筛选的产蛋白酶细菌均属于Gammaproteobacteria纲,且大多数属于Alteromonadales目和Vibrionales目的不同属。对其中14株菌株的14个胞外蛋白酶的N-端氨基酸序列分析表明,所有这些蛋白酶属于金属蛋白酶的M4家族或丝氨酸蛋白酶的S8家族。本研究提供了海洋沉积物产蛋白酶细菌在类群及其胞外蛋白酶在类型上的新细节,这将有助于全面了解微生物酶促降解海洋沉积物有机氮的过程和机理。     

高质量增长背景下海洋经济发展的时空协调模式研究——基于环渤海地区地级市的实证

海洋经济协调发展是科学评价区域海洋经济发展质量的重要依据。遵循城市与海洋经济协同的发展理念,构建环渤海城市海洋经济发展时空协调度评价体系,运用复杂系统时空协调度评价模型,计算并分析2008~2016年环渤海城市海洋经济发展时空协调度,通过SaTScan软件分析其时空聚类区。研究结果显示：①海洋经济各系统发展水平中,社会系统呈大幅度分散上升趋势,经济系统、生态系统与综合系统呈小幅度集中与分散交替上升趋势;协调等级时序变化稳定型城市主要是大连、潍坊、青岛、烟台、威海。②协调度时空聚类区既有空间分异又有重叠交集,社会系统、综合系统、经济系统聚类区依次相互覆盖,生态系统与其它三系统既有重叠区也有独立区。③聚类区内部,社会系统最为稳定,综合系统、经济系统次之,生态系统最为薄弱。     

中国旅游城市生态安全系统评估与类型划分研究 ——基于节点权重约束网络DEA模型

采用 DPSIR概念模型作为旅游生态安全系统的基本形态,引入网络 DEA模型测度系统运行效率,从“投入-产出”的研究视角探究旅游生态安全系统内部作用机理。采用结构方程模型对网络 DEA模型的结构及权重加以限制,构建具有节点权重约束的网络 DEA评价模型,对主要旅游城市生态安全系统实例进行实证研究。研究结果认为：将生态安全系统分为自然运行阶段、管理反馈阶段2阶段进行效率评价,加权综合得出各旅游城市生态安全系统的综合评价值,以此为依据将样本城市划分为按系统效率的评价结果将其分划为绿色发展型、稳步发展型、高效发展型、双向提升型和管理能力缺失型,针对各类型旅游城生态安全系统特点提出改善其生态安全系统状况的建议。     

ATS藻板与自然礁石上藻群生物多样性的比较

ATS(algal turf scrubber)系统是一种利用潮间带藻类高效去除富营养化水体中氮(N)、磷(P)元素的水质净化系统, 藻类是支持整个系统最重要的组成部分, 其群落结构与水质净化效果密切相关。该研究基于Illumina MiSeq平台的高通量测序技术对海水水族缸的ATS系统中藻板样品和自然礁石上的藻类进行多样性分析。18S rDNA研究结果表明, ATS系统中经筛选得到藻类优化序列21390条, 其中对丝藻属Antithamnion占主要地位, 占序列总数的22.79%, 其次19.07%序列归入斜纹藻属Psammodictyon; 宋井、展南亭、后宅3个地区的藻类经筛选分别得到88435、87129、106458条优化序列, 主要为分枝色指藻属Chroodactylon、宽果藻属Mastocarpus和日本马泽藻属Mazzaella。ATS系统和自然环境样品共有的优势藻为骨条藻属Skeletonema和仙菜属Ceramium。本实验在研究ATS系统与自然礁石上的藻类群落相似性的同时, 深入探究了其群落结构的差异性, 为进一步优化ATS系统的功能提供了理论依据。     

低分子量琼胶的抗氧化活性研究

采用化学发光法研究了低分子量琼胶清除羟基自由基(·OH)和超氧阴离子(O2·-)的活性。结果表明,4个组均有清除自由基的作用,其中A3的清除羟基自由基(·OH)的能力比阳性对照硫脲的效果好得多。S2-2,S2-3,S2-4,A3对超氧阴离子(O2·-)和羟基自由基的IC50值分别为:3.7,1.3,0.96,0.83g/L和1.94,1.28,0.85,0.26g/L。