GPU accelerated marine data visualization method

The study of marine data visualization is of great value. Marine data, due to its large scale, random variation and multiresolution in nature, are hard to be visualized and analyzed. Nowadays, constructing an ocean model and visualizing model results have become some of the most important research topics of ‘Digital Ocean'. In this paper, a spherical ray casting method is developed to improve the traditional ray-casting algorithm and to make efficient use of GPUs. Aiming at the ocean current data, a 3D view-dependent line integral convolution method is used, in which the spatial frequency is adapted according to the distance from a camera. The study is based on a 3D virtual reality and visualization engine, namely the VV-Ocean. Some interactive operations are also provided to highlight the interesting structures and the characteristics of volumetric data. Finally, the marine data gathered in the East China Sea are displayed and analyzed. The results show that the method meets the requirements of real-time and interactive rendering.     

Phylogenetic analysis of epibacterial communities on the surfaces of four red macroalgae

Macroalgal surfaces are prone to being attached by bacteria. Epibacterial community structures on marine macroalgae are host-specific but temporally and spatially variable. In this study, we investigated the structure of epibacterial communities on the surfaces of four red macroalgae, Gracilaria lemaneiformis, Gloiopeltis furcata, Mazzaella sp. and Porphyra yezoensis, by analyzing the sequences of 16 S r RNA gene libraries. Healthy individuals of all macroalgae species were collected in winter from a farm at Dalian, China. The results showed that the epibacterial communities were mainly dominated by α-Proteobacteria, γ-Proteobacteria and Bacteroidetes. Deinococcus-Thermus, Spirochaetes and ε-Proteobacteria were also found. The majority of cloned sequences shared the greatest similarity to those of culturable organisms. A large portion of sequences from the α-Proteobacteria homed in Roseobacter clade, i.e., genera Ahrensia, Roseovarius, Litoreibacter, Octadecabacter, Thaiassobacter and Sulfitobacter, while members of Bacteroidetes mainly belonged to family Flavobacteriaceae. The cloned sequences could be separated into 66 OTUs at 0.01 distance value, and rare common OTUs were found among libraries. At genus level, Pseudoalteromonas dominated Gr. lemaneiformis and Gl. furcata libraries, accounting for 72.2% and 47.3%, respectively. Sulfitobacter dominated P. yezoensis library, accounting for 35.4%. A previously undefined cluster within Deinococcus-Thermus dominated Mazzaella sp. library, accounting for 24.6% of the all. These results indicated that a broad range of bacteria inhabited the surfaces of these macroalgae.     

基于空间综合分析的长株潭城市群结构评价与优化策略

长株潭城市群空间特征及优化策略可作为我国多中心城市群空间优化的典型样本之一.本文运用多维度空间分析方法,对长株潭城市群空间展开现状测度与评价,尊重城市群阶段特征,选取针对性指标对比反映空间内在特征.在采用核密度法分析2013年和2017年湖南省152个区县第二产业与就业指标的空间变化后,得出长株潭城市群已初步形成空间—...     

百色双套自动气象站雷击故障维修的方法

通过对百色双套自动气象站遇到历史罕见的强雷暴袭击出现故障维修,摸索出了检修双套新型自动站的通信、电源供应、主机HY3000、接口RS232、分采仪器等模块的方法,供同行借鉴.     

海山区浮游生态学研究

本文综述了海山浮游生态学研究的现状。海山是大洋中常见的地形单元,在有的海山附近鱼类和底栖生物的生物量比周围大洋中要多,针对这些鱼类和底栖生物的饵料来源提出了三种假说,第一种假说认为海山区特殊的物理环境导致初级生产力较高(经典假说),第二种假说认为海山区的饵料不是本地生产的,地形和流场使得外来的浮游生物在海山区富集或通量加大(外来营养补充假说),第三种假说认为海山上部的颗粒有机物营养较高,是鱼类和底栖生物的营养来源之一(颗粒有机物补充假说)。对海山浮游生态学的研究基本围绕这几个假说进行。目前只在9座海山进行了浮游生态学研究,这些研究表明单个假说并不能解释海山附近鱼类生物量较大的现象,海山鱼类和底栖生物的营养来源可能有很多,这些假说阐述的机制并不互相矛盾,海山生物之间的营养关系也比原来想象的复杂得多。已有研究都是针对其中某个假说进行验证研究,建议我国即将进行的海山浮游生态学研究针对三种假说进行海上调查,以提供完备的数据支持。     

鳗鲡目鱼类线粒体蛋白质编码基因易位及系统演化关系分析

鳗鲡目鱼类线粒体基因组的基因组成较为保守,在58个线粒体基因组中,仅有3个物种存在基因数量的差异。在19个鳗鲡目鱼类线粒体基因组中存在主编码基因的重排。主编码基因的变异位点分析结果支持nad5、nad4和nad2基因作为cox1和lrRNA基因辅助的分子标记。鳗鲡科Anguillidae的20个种(亚种)聚在一起,强烈支持鳗鲡科为单系群(BPP=100)。鳗鲡科下属的3个类群(大洋洲类群、大西洋类群和印度洋-太平洋类群)也同时得到有力的验证(BPP均为100)。线鳗科Nemichthyidae和锯齿鳗科Serrivomeridae亲缘关系最近,二者聚类后,与鳗鲡科Anguillidae构成姊妹群(BPP=100)。在囊喉鱼亚目Saccopharyngoidei中,宽咽鱼科Eurypharyngidae与囊鳃鳗科Saccopharyngidae聚类(BPP=100),同时,单颌鳗科Monognathidae与月尾鳗科Cyematidae聚类(BPP=100),4个科聚在一支,支持囊喉鱼亚目为单系群(BPP=100)。在囊喉鱼亚目线粒体基因组中,3个物种(吞鳗Eurypharynx pelecanoides、拉文囊鳃鳗Saccopharynx lavenbergi和杰氏单颌鳗Monognathus jesperseni)存在主编码基因的重排。16种鳗鲡(细美体鳗Ariosoma shiroanago、短吻颈鳗Derichthys serpentinus、凯氏短尾康吉鳗Coloconger cadenati、鸭颈鳗Nessorhamphus ingolfianus、龟草鳗Thalassenchelys sp.、粗犁齿海鳗Cynoponticus ferox、百吉海鳗Muraenesox bagio、巨斑花蛇鳗Myrichthys maculosus、大吻沙蛇鳗Ophisurus macrorhynchos、几内亚副康吉鳗Paraconger notialis、哈氏异康吉鳗Heteroconger hassi、小头鸭嘴鳗Nettastoma parviceps、弱头鳗Leptocephalus sp.、斑点长犁齿鳗Hoplunnis punctata、尖吻小鸭嘴鳗Facciolella oxyrhyncha和星康吉鳗Conger myriaster),与鳗鲡目线粒体主编码基因的原始排列相比,共享nad6基因的易位。同时,基于线粒体基因组13个蛋白质编码基因构建的系统演化树,强烈支持这16个物种聚为一支(BPP=100)。然而,由此而带来的海鳗科Muraenesocidae、拟鯙科Chlopsidae和糯鳗科Congridae是否为单系群的问题,值得今后深入探究。     

东海表层水体中的多环芳烃及其沉积通量估算

以东海陆架水体中溶解态多环芳烃(PAHs)含量为基础,引入颗粒相-水相间的物质吸附系数(Koc)计算悬浮颗粒物中PAHs有机碳归一化含量,结合陆架沉积物有机碳的年埋藏通量,估算东海陆架沉积物中PAHs沉积通量。结果显示:水体中溶解态的15种PAHs总含量为(701±392)ng/L,变化范围为412~1 032ng/L,PAHs组成以3环为主。计算得到的悬浮颗粒物中15种PAHs有机碳归一化含量为20~28μg/g,对应的PAHs沉积通量为150~210t/a。估算结果与实测沉积物中PAHs含量和沉积通量结果基本吻合,表明实验室模拟实验获取的化合物Koc值适用于东海颗粒相-水相间的分配模型,证实悬浮颗粒物有机碳含量在控制PAHs两相分布过程中起着重要作用。同时,该方法为海洋沉积物中PAHs沉积通量的估算提供一种新途径。     

基于MapReduce计算模型的气象资料处理调优试验

云计算技术使用分布式的计算技术实现了并行计算的计算能力和计算效率,解决了单机服务器计算能力低的问题。基于长序列历史资料所计算得出的气候标准值对于气象领域实时业务、准实时业务及科学研究中均具有重要的意义。由于长序列历史资料数据量大、运算逻辑较复杂,在传统单节点计算平台上进行整编计算耗时非常长。该文基于Hadoop分布式计算框架搭建了集群模式的云计算平台,以长序列历史资料作为源数据,基于MapReduce计算模型实现了部分整编算法,提高计算时效。同时,由于数据源本身具有文件个数多、单个文件小等特点,对数据源存储形式及数据文件大小进行改造,分别利用SequenceFile方式及文本文件合并方式对同一种场景进行计算时效对比测试,分别测试了10个文件合并、100个文件合并两种情况,使时效性得到了更大程度的提升。     

Effects of meridional sea surface temperature changes on stratospheric temperature and circulation

Using a state-of-the-art chemistry-climate model,we analyzed the atmospheric responses to increases in sea surface temperature （SST）.The results showed that increases in SST and the SST meridional gradient could intensify the subtropical westerly jets and significantly weaken the northern polar vortex.In the model runs,global uniform SST increases produced a more significant impact on the southern stratosphere than the northern stratosphere,while SST gradient increases produced a more significant impact on the northern stratosphere.The asymmetric responses of the northern and southern polar stratosphere to SST meridional gradient changes were found to be mainly due to different wave properties and transmissions in the northern and southern atmosphere.Although SST increases may give rise to stronger waves,the results showed that the effect of SST increases on the vertical propagation of tropospheric waves into the stratosphere will vary with height and latitude and be sensitive to SST meridional gradient changes.Both uniform and non-uniform SST increases accelerated the large-scale Brewer-Dobson circulation （BDC）,but the gradient increases of SST between 60°S and 60°N resulted in younger mean age-of-air in the stratosphere and a larger increase in tropical upwelling,with a much higher tropopause than from a global uniform 1.0 K SST increase.     

Representation of tropical subseasonal variability of precipitation in global reanalyses

Tropical subseasonal variability of precipitation from five global reanalyses (RAs) is evaluated against Global Precipitation Climatology Project (GPCP) and Tropical Rainfall Measuring Mission (TRMM) observations. The RAs include the three generations of global RAs from the National Center for Environmental Prediction (NCEP), and two other RAs from the European Centre for Medium-Range Weather Forecasts (ECMWF) and the National Aeronautics and Space Administration/Goddard Space Flight Center (NASA/GSFC). The analysis includes comparisons of the seasonal means and subseasonal variances of precipitation, and probability densities of rain intensity in selected areas. In addition, the space–time power spectrum was computed to examine the tropical Madden-Julian Oscillation (MJO) and convectively coupled equatorial waves (CCEWs). The modern RAs show significant improvement in their representation of the mean state and subseasonal variability of precipitation when compared to the two older NCEP RAs: patterns of the seasonal mean state and the amplitude of subseasonal variability are more realistic in the modern RAs. However, the probability density of rain intensity in the modern RAs show discrepancies from observations that are similar to what the old RAs have. The modern RAs show higher coherence of CCEWs with observed variability and more realistic eastward propagation of the MJO precipitation. The modern RAs, however, exhibit common systematic deficiencies including: (1) variability of the CCEWs that tends to be either too weak or too strong, (2) limited coherence with observations for waves other than the MJO, and (3) a systematic phase lead or lag for the higher-frequency waves.