Assessing the extent of mangrove change caused by Cyclone Vance in the eastern Exmouth Gulf, northwestern Australia

Changes in mangal area were quantified in the eastern Exmouth Gulf over six years (1999–2004) after Cyclone Vance using Landsat TM satellite imagery and aerial photography. Vance was the strongest tropical cyclone ever to impact the Australian mainland before 2006 and produced wind gusts of more than 280 km h⁻¹. Image data were processed using ENVI™ and IDRISI™ software. Three sets of Landsat TM images from 1999 (a few days before the cyclone), 2002 and 2004 were used, along with 2004 digital aerial photography. A ‘common’ subset of 904 km² was selected from all images and classification was developed using ISODATA™ unsupervised classification to identify spectrally distinct areas followed by principal component analysis (PCA), vegetation indices and supervised classification. Some 12,800 ha of mangrove habitat was present before the cyclone and approximately 5700 ha (44%) was removed by it. Most mangroves lost (74%) between 1999 and 2004 were converted either to bare sediment or to live saltmarshes and this occurred mostly between 1999 and 2002. Five basic categories of damage were conspicuous from imagery and field observations, and evidence suggests that much of the loss was due to the longer term consequences of sediment deposition or smothering, rather than the immediate effects of wind or waves. Mangroves exhibited accelerated recovery between 2002 and 2004, and around 1580 ha regenerated during this time, amounting to a return of 68% of their former coverage. At this recovery rate we estimate that they should have returned to their pre-cyclone area by 2009. Over half of the saltmarsh habitats (54%) were removed by the cyclone (4060 ha) but their recovery has been far more rapid than mangroves. After 5 years, saltmarshes had returned to 87% of their previous area. The 5700 ha of mangrove habitat damaged by Cyclone Vance exceeds any anthropogenic impact that has ever taken place in Western Australia by several orders of magnitude.     

Seasonal and spatial variation in abundance and egg production of Paracalanus parvus (Copepoda: Calanoida) in/out Jiaozhou Bay, China

The spatial distribution of stage-specific abundance and reproduction of the copepod Paracalanus parvus were studied from October 2005 to September 2006 in the Jiaozhou Bay. This copepod occurred continuously in this bay throughout the year. The species reached the lowest abundance in April and peaked in June. From October to December, distribution center mainly occurred in offshore water and at the mouth of the bay. In winter, early copepodites and adults gradually decreased and till February, most of the population was only comprised of CIV–CV stages. Overwintering copepodites matured in March and males tended to mature before female. From May to September, each stage occurred in the population and gradually reached high abundance. Temperature and chlorophyll a (Chl-a) concentration in the three stations can't clearly explain the seasonal variation in stage-specific abundance, so we surmised the important effect of the Yellow Sea. Egg production rate (EPR) reached its lowest in winter and peaked in June at 60.8 eggs female⁻¹ day⁻¹ in nearshore water. In the warming period, EPR in nearshore water was statistically higher and EPR > 10 eggs female⁻¹ day⁻¹ lasted longer than that in offshore water, showing the importance of nearshore water for recruitment of P. parvus. Our study showed that EPR was positively related to temperature and total chlorophyll a in offshore water and mouth of the bay. In nearshore water, the relationships between EPR and temperature and Chl-a in three size fractions were not the same as those in offshore water, suggesting complicated ecosystem in such a eutrophic area in warming period.     

Dissolved nutrient balance and net ecosystem metabolism in a Mediterranean-climate coastal lagoon: San Diego Bay

The temporal and spatial variability of dissolved inorganic phosphate (DIP), nitrogen (DIN), carbon (DIC) and dissolved organic carbon (DOC) were studied in order to determine the net ecosystem metabolism (NEM) of San Diego Bay (SDB), a Mediterranean-climate lagoon. A series of four sampling campaigns were carried out during the rainy (January 2000) and the dry (August 2000 and May and September 2001) seasons. During the dry season, temperature, salinity and DIP, DIC and DOC concentrations increased from oceanic values in the outer bay to higher values at the innermost end of the bay. DIP, DIC and DOC concentrations showed a clear offset from conservative mixing implying production of these dissolved materials inside the bay. During the rainy season, DIP and DOC increased to the head, whereas salinity decreased toward the mouth due to land runoff and river discharges. The distributions of DIP and DOC also showed a deviation from conservative mixing in this season, implying a net addition of these dissolved materials during estuarine mixing within the bay. Mass balance calculations showed that SDB consistently exported DIP (2.8–9.8 × 10³ mol P d⁻¹), DIC (263–352 × 10³ mol C d⁻¹) and DOC (198–1233 × 10³ mol C d⁻¹), whereas DIN (5.5–18.2 × 10³ mol N d⁻¹) was exported in all samplings except in May 2001 when it was imported (8.6 × 10³ mol N d⁻¹). The DIP, DIC and DOC export rates along with the strong relationship between DIP, DIC or DOC and salinity suggest that intense tidal mixing plays an important role in controlling their distributions and that SDB is a source of nutrients and DOC to the Southern California Bight. Furthermore, NEM ranged from −8.1 ± 1.8 mmol C m⁻² d⁻¹ in September to −13.5 ± 5.8 mmol C m⁻² d⁻¹ in January, highlighting the heterotrophic character of SDB. In order to explain the net heterotrophy of this system, we postulate that phytoplankton-derived particulate organic matter, stimulated by upwelling processes in the adjacent coastal waters, is transported into the bay, retained and then remineralized within the system. Our results were compared with those reported for the heterotrophic hypersaline coastal lagoons located in the semi-arid coast of California–Baja California, and with those autotrophic hypersaline systems found in the semi-arid areas of Australia. We point out that the balance between autotrophy and heterotrophy in inverse estuaries is dependent on net external inputs of either inorganic nutrients or organic matter as it has been indicated for positive estuaries.     

Floating and fixed artificial habitats: Spatial and temporal patterns of benthic communities in a coral reef environment

While natural marine habitats with motion capabilities, e.g., kelps and seaweeds, have been studied alongside their associated fouling communities, little is known of the effect of motion on the communities of floating artificial habitats such as buoys, rafts, and pontoons, particularly in tropical systems. Hydrodynamic features greatly differ between floating and fixed artificial substrata, which in turn affect the structure of their associated communities. This study tested the hypothesis that floating and fixed artificial installations in a tropical reef system (Eilat, Red Sea) would support different benthic communities throughout space and time. Specifically, we examined differences in communities recruited onto settlement plates between floating and fixed installations deployed at three different sites, along a two-year monitoring period. The three sites exhibited distinct differences in species assemblages between the monitoring dates (6, 12, 18 and 24 months post deployment), mainly between the first and the last two dates. The average level of dissimilarity between floating and fixed installations increased over time at all sites. Over 50% of the dissimilarity between the floating and fixed installations resulted from five taxonomic groups i.e., bryozoans, bivalves, barnacles, sponges, including the amount of bare space on the settlement plates. The contribution of these groups to the dissimilarity changed both temporally within each site, and spatially among sites. The observed differences were related to the hydrodynamic characteristics of floating and fixed habitats, interacting with biotic features such as predation, successional processes and seasonality; and abiotic features including small-scale spatial changes, light, and position in the water column.     

The role of basement inheritance faults in the recent fracture system of the inner shelf around Alboran Island,Western Mediterranean

Fractures associated with volcanic rock outcrops on the inner shelf of Alboran Island, Western Mediterranean, were mapped on the basis of a side-scan sonar mosaic. Absolute maximum fracture orientation frequency is NW–SE to NNW–SSE, with several sub-maxima oriented NNE–SSW, NE–SW and ENE–WSW. The origin of the main fracture systems in Neogene and Quaternary rocks of the Alboran Basin (south Spain) appears to be controlled by older structures, namely NE–SW and WNW–ESE to NW–SE faults which cross-cut the basement. These faults, pre-Tortonian in origin, have been reactivated since the early Neogene in the form of strike-slip and extensional movements linked to the recent stress field in this area. Fracture analysis of volcanic outcrops on the inner continental shelf of Alboran Island suggests that the shelf has been deformed into a narrow shear zone limited by two NE–SW-trending, sub-parallel high-angle faults, the main orientation and density of which have been influenced by previous WNW–ESE to NW–SE basement fractures.     

Evaluation of policy options for the live reef food fish trade in the province of Palawan,Western Philippines

The live reef food fish (LRFF) trade has an estimated annual retail value of US$1 billion in the Asia-Pacific region and at least US$30 million in the Philippines. Palawan Province is the trade's center accounting for as much as 55% of the commodity's total export. Concern about the LRFF trade has caused the Palawan Provincial government to take action to regulate the trade. Four key policy options to address the short-term policy objective of developing a sustainable LRFF industry through the reduction of threats associated with destructive fishing and overfishing were proposed. These four policy options and associated analyses were presented to stakeholders at three separate policy consultations. The stakeholders reached a consensus that a regulated LRFF trade was the most sensible option. As a result, the Provincial Government of Palawan took action to enact “The Palawan Live Reef Fish Ordinance of 2006”, which provides for the sustainable and integrated regulation of the LRFF industry. This provincial ordinance will assist in crafting a national policy for the LRFF trade and may also be useful in revising the 1998 Philippine Fisheries Code. The key challenge is how to translate the ordinance provisions into effective on-the-ground actions.     

Lagrangian measurements and modelling of fluid advection in the inner surf and swash zones

New laboratory and field data are presented on fluid advection into the swash zone. The data illustrate the region of the inner surf zone from which sediment can be directly advected into the swash zone during a single uprush, which is termed the advection length. Experiments were conducted by particle tracking in a Lagrangian reference frame, and were performed for monochromatic breaking waves, solitary bores, non-breaking solitary waves and field conditions. The advection length is normalised by the run-up length to give an advection ratio, A, and different advection ratios are identified on the basis of the experimental data. The data show that fluid enters the swash zone from a region of the inner surf zone that can extend a distance seaward of the bore collapse location that is approximately equal to half of the run-up length. This region is about eight times wider than the region predicted by the classical swash solution of Shen and Meyer [Shen, M.C., Meyer, R.E., 1963. Climb of a bore on a beach. Part 3. Runup. Journal of Fluid Mechanics 16, 113–125], as illustrated by Pritchard and Hogg [Pritchard, D., Hogg, A.J., 2005. On the transport of suspended sediment by a swash event on a plane beach. Coastal Engineering 52, 1–23]. Measured advection ratios for periodic waves show no significant trend with Iribarren number, consistent with self-similarity in typical swash flows. The data are compared to recent characteristic solutions of the non-linear shallow water wave (NLSW) equations and both finite difference and finite volume solutions of the NLSW equations.     

Discussion of “Wave setup and setdown generated by obliquely incident waves” by T.-W. Hsu et al., Coastal Engineering, 53, 865–877, 2006

In the recent paper by Tai-Wen Hsu, John R.-C. Hsu, Wen-Kai Weng, Swun-Kwang Wang, and Shan-Hwei Ou (Coastal Engineering, 53, 865–877, 2006), the authors derived theoretical formulations for calculating the wave setup and setdown induced by obliquely incident waves on a beach. The derivation of an expression for setdown contains errors which would lead to an imbalance in longshore momentum flux outside the surfzone. We correct their derivation and give results in terms of the radiation stress concept in a general case including an oblique wave incidence. We also point out that the correct form of wave setdown is important to describe the zero-net force in the momentum balance outside the surfzone.     

A numerical scheme for morphological bed level calculations

The typical equation for bed level change in sediment transport in river, estuary and near shore systems is based on conservation of sediment mass. It is generally a nonlinear conservation equation for bed level. The physics here are similar to shallow water wave equations and gas dynamics equation which will develop shock waves in many circumstances. Many state-of-art morphological models use classical lower order Lax–Wendroff or modified Lax–Wendroff schemes for morphology which are not very stable for long time sediment transport processes simulation. Filtering or artificial diffusion are often added to achieve stability. In this paper, several shock capturing schemes are discussed for simulating bed level change with different accuracy and stability behaviors. The conclusion is in favor of a fifth order Euler-WENO scheme which is introduced to sediment transport simulations here over other schemes. The Euler-WENO scheme is shown to have significant advantages over schemes with artificial viscosity and filtering processes, hence is highly recommended especially for phase-resolving sediment transport models.     

Trace elements and polycyclic aromatic hydrocarbons (PAHs) concentrations in deep Gulf of Mexico sediments

The concentrations of polycyclic aromatic hydrocarbons (PAHs) and trace elements were determined for surface (top 2 cm) sediment samples collected during the deep Gulf of Mexico benthos (DGoMB) study .These elements and compounds are known to be toxic to organisms at high concentrations and may affect biological communities. There is no indication of major anthropogenic input of the elements Be, Co, Cr, Fe, Si, Tl, V, K, Mg, Ca, Sr and Zn, based on normalization to Al. The concentrations of these metals in the sediment are a function of the relative amounts of trace-metal-rich Mississippi River-derived silicate material and trace-metal-poor plankton-derived carbonate. This is not true for the elements Ba, Ni, Pb, Cd, As, Cu and Mn, whose concentrations show considerable scatter when normalized to Al and a general enrichment. On a normalized basis, Mn is enriched 5–10 fold, Cu and Ni 2–3 fold and Pb 2 fold over Mississippi River-derived material. These enrichments are likely the result of remobilization of metals from depths in the sediment column where reducing conditions exist. The Ba concentrations at selected sites are higher than those of average clay-rich sediments, but are typical of sediments from near oil well platforms in the northern Gulf of Mexico. In the case of Ba, it seems likely that the enrichments, as high as a factor of 10, are due to disposal of oil well drilling mud. The Ba-enriched samples are from the three shallowest water sites in the Mississippi Trough (sites MT1, 2 and 3) and from site C1 and WC5. All are in an area of intense petroleum exploration and development. PAH concentrations are also elevated at MT1, MT3 and C1. The total PAH concentration ranged from not detected (ND) to 1033 ng/g with a mean of 140 ng/g. Even at the sites most enriched in PAHs and trace elements, the concentrations are not at the levels expected to adversely affect the biota. However, these predicted non-effects are based on research using mostly near-shore estuarine species, not on the indigenous species at the sampling sites.