Seagrass ecophysiology meets ecological genomics: are we ready?

In March 2011, the Ecophysiology and Genetics Working Groups of the European Science Foundation COST Action ES 0906, entitled Seagrass Productivity: From Genes to Ecosystem Management, organized an exploratory workshop entitled “Linking Ecophysiology and Ecogenomics in Seagrass Systems”. The goal of the workshop was to discuss how to integrate comparative gene expression studies with physiological processes such as photosynthetic performance, carbon and nitrogen utilization and environmental adaptation. The main questions discussed for integrative research related to mechanisms of carbon utilization, light requirements, temperature effects and natural variation in pH and ocean acidification. It was concluded that the seagrass research community is still in the nascent stages of linking ecophysiology with genomic responses, as carbon and nitrogen metabolism of seagrasses have not been sufficiently well studied. Likewise, genomic approaches have only been able to assign meaningful interpretations to a handful of differentially expressed genes. Nevertheless, the way forward has been established.     

Weak-contrast approximation of the elastic scattering matrix in anisotropic media

The plane-wave reflection and transmission coefficients at a plane interface between two anisotropic media constitute the elements of the elastic scattering matrix. For a 1-D anisotropic medium the eigenvector decomposition of the system matrix of the transformed elasto-dynamic equations is used to derive a general expression for the scattering matrix. Depending on the normalization of the eigenvectors, the expressions give scattering coefficients for amplitudes or for vertical energy flux.Computing the vertical slownesses and the corresponding polarizations, the eigenvector matrix and its inverse can be found. We give a simple formula for the inverse, regardless of the normalization of the eigenvectors. When the eigenvectors are normalized with respect to amplitudes of displacement (or velocity), the calculation of the scattering matrix for amplitudes is simplified.When the relative changes in all parameters are small, a weak-contrast approximation of the scattering matrix, based on the exactly determined polarization vectors in an average medium, is obtained. The same approximation is also derived directly from the transformed elasto-dynamic equations for a smooth vertically inhomogeneous medium, proving the consistency of the approximation.For monoclinic media, with the mirror symmetry plane parallel to the interface, the approximative scattering matrix is given in terms of analytic expressions for the non-normalized eigenvectors and vertical slownesses. For transversely isotropic media with a vertical axis of symmetry (VTI) and isotropic media, explicit solutions for the weak-contrast approximations of the scattering matrices have been obtained. The scattering matrix for amplitudes for isotropic media is well known. The scattering matrix for vertical energy flux may have applications in AVO analysis and inversion due to the reciprocity of the reflection coefficients for converted waves.Numerical examples for monoclinic and VTI media provide good agreement between the approximative and the exact reflection matrices. It is, however, expected that the approximations cannot be used when the symmetry properties of the two media are very different. This is because the approximation relies on a small relative contrast between the eigenvectors in the two media.Presented at the Workshop Meeting on Seismic Waves in Laterally Inhomogeneous Media, Castle of Trest, Czech Republic, May 22–27, 1995.     

Palaeoclimatic studies in South Shetland Islands,Antarctica, based on numerous stratigraphic variables in lake sediments

The hitherto longest found lake sediment sequence on Byers Peninsula, Livingston Island, South Shetland Islands, was analysed with respect to lithology, chronology, diatoms, Pediastrum, pollen and spores, mosses, mineralogy, and sediment chemistry. During the ca. 5000 year long development the sediments were influenced by frequent tephra fall-outs. This volcanic impact played a major role in the lake's history during two periods, 4700–4600 and 2800–2500 BP, but was of importance during the lake's entire history with considerable influence on many of the palaeoenvironmentally significant indicators. The large and complex data set was analysed and zonated with different types of multivariate analysis. This resulted in a subdivision of the sequence into 8 time periods and 21 variables. Redundancy analysis (RDA) of this data set, both without and with the tephra periods, and with 4–6 of the variables as explanatory environmental variables, reveal that climatic/environmental signals are detectable. The palaeoclimatic picture that emerged out of the tephra noise suggests that the first 100 years were characterized by mild, humid conditions. This was followed by a less mild and humid climate until ca. 4000 BP when a gradual warming seems to have started, coupled with increased humidity. These mild and humid conditions seem to have reached an optimum slightly after 3000 BP. At ca. 2500 BP a distinct climatic deterioration occurred with colder and drier conditions and long seasons with ice cover. This arid, cold phase probably reached its optimum conditions at ca. 1500 BP, when slightly warmer conditions might have prevailed for a while. Except for the modern sample with rather mild climate, the last 1400 years seem to have been fairly arid and cold, and the effects of the frequent volcanic activity during this period is only vaguely seen in the records.     

Extreme flows and unusual water levels near a Caribbean coral reef: was this a case of a “perfect storm”?

Observations of currents aimed to study the flow near a spawning aggregation reef, Gladden Spit off the coast of Belize, reveal unusually strong currents on 19–20 October 2009 (the current speed was over 1?m?s^?1, when the mean and standard deviation are 0.2?±?0.12?m?s^?1). During this short time, the water level was raised by 60–70?cm above normal in one place, but lowered by 10–20?cm in another location just 2?km away. The temperature dropped by over 2°C within a few hours. Analyses of local and remote sensing data suggest that a rare combination of an offshore Caribbean cyclonic eddy, a short-lived local tropical storm, and a Spring tide, all occurred at the same time and creating a “perfect storm” condition that resulted in the unusual event. High-resolution simulations and momentum balance analysis demonstrate how the unique shape of the coral reef amplified the coastal current through nonlinear flow–topography interactions. The suggested mechanism for the water level change is different than the classical wind-driven storm surge process. The study has implications for the influence of external forcing on mixing processes and physical–biological interactions near coral reefs.     

Impact of the Kuroshio Current on the South China Sea based on a 115 000 year diatom record

We used the tropical oceanic planktonic diatom species Nitzschia marina, Rhizosolenia bergonii and Azpeitia africana/Azpeitia neocrenulata, most commonly found in the surface sediments of the northeasternmost South China Sea (SCS) where the Kuroshio Current enters the SCS through the Bashi Strait north of Luzon, to analyse the influence of the the Kuroshio Current on the SCS. The impact of the Kuroshio Current seems to be relatively strong during major warm periods and, to a lesser degree, in minor warm periods during the last 115 000 years. The strongest influence took place during the main part of the Holocene and during the very late phase of Marine Isotope Stage (MIS) 5e. It is possible to distinguish two magnitudes of change in the impact of the Kuroshio Current on the SCS: large changes occurred at shifts between glacial and interglacial conditions, while smaller changes seem to have recurred in both glacial and interglacial episodes as well as during the Holocene. Climatic/oceanographic changes and sea‐level variations were possibly the two most important mechanisms for the varying influences of the Kuroshio Current on the SCS. The interaction between the Kuroshio Current and monsoon‐related processes may also have played a role. However, because of restricted knowledge of the present‐day Kuroshio Current and the absence of a modern analogue to the ancient SCS due to the marked changes in palaeogeography, this relationship is difficult to establish. Copyright © 2006 John Wiley & Sons, Ltd.     

Calibration of estuarine current crosses

Tethered current crosses are simple, reliable tools in making measurements of estuarine currents in the absence of surface waves. The standard error of the estimate of current speed is less than 5 cm s^?1 for the particular crosses and weights used in a calibration experiment. The useful velocity range of these current crosses was 8–147 cm s^?1, corresponding to a measured angle, α, from 2° to 30°. Regression of the independently measured current speed on $\text{(tan α)}{}^{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}$ yielded coefficients of determination greater than 0·94, indicating that the drag coefficient is not a function of current speed. However, the calculated drag coefficients varied widely from 0·66 to 2·55, depending on the particular combination of cross and weight, varying drastically from the commonly assumed drag coefficient value of 1·12. Thus, in using current crosses, it is imperative to calibrate each cross against a current meter reading to determine an appropriate value for the drag coefficient for a particular current cross and weight.     

Are all maps mental maps?

The article focuses on the way in which map content reflects the cartographer's World view and system of values. Different World views are illustrated historically. Examples of topographical, land-use and vegetation maps from different parts of the World indicate the prevalence of Eurocentric perceptions in cartography. Different geological maps of Norden show how the visual image depends on the classification system adopted. All maps are mental maps in that their content is culturally determined and ethnocentric in origin.     

A magnetostratigraphic comparison between 14C years and varve years during the Late Weichselian,indicating significant differences between the time-scales

A ¹⁴C-dated magnetostratigraphy of absolute declination and inclination between 12500 and 10000 ¹⁴C yr BP was recently developed for southern Sweden. Recently also the Swedish geochronological time-scale, based on c. 11 500 annually deposited clay-varves, was connected with the present. It should therefore be possible to compare the two chronologies with a reliable magnetostratigraphic record in an appropriate clay-varve section. We have found such a site within the Middle Swedish end-moraine zone. Statistical correlations between the two independently dated time-scales suggest that at 10500–10200 ¹⁴Cy r BP the varve chronology exceeds the ¹⁴C chronology by the order of 500-600 varve yr. Other correlations indicate that the difference between the two chronologies was less at 11000 ¹⁴C yr BP, and further correlations between the time-scales at 12000 ¹⁴C yr BP suggest that the difference between the chronologies increased steadily from 12000 to 10000 ¹⁴C yr BP. If these correlations are correct they imply that the ¹⁴C production rate increased steadily during the Late Weichselian.     

Transmissivity of solar radiation through crowns of single urban trees—application for outdoor thermal comfort modelling

Trees play an important role in mitigating heat stress on hot summer days, mainly due to their ability to provide shade. However, an important issue is also the reduction of solar radiation caused by trees in winter, in particular at high latitudes. In this study, we examine the transmissivity of total and direct solar radiation through crowns of single street trees in Göteborg, Sweden. One coniferous and four deciduous trees of species common in northern European cities were selected for case study. Radiation measurements were conducted on nine clear days in 2011–2012 in foliated and leafless tree conditions using two sunshine pyranometers—one located in shade of a tree and the other one on the roof of an adjacent building. The measurements showed a significant reduction of total and direct shortwave radiation in the shade of the studied trees, both foliated and leafless. Average transmissivity of direct solar radiation through the foliated and defoliated tree crowns ranged from 1.3 to 5.3 % and from 40.2 to 51.9 %, respectively. The results confirm the potential of a single urban tree to reduce heat stress in urban environment. However, the relatively low transmissivity through defoliated trees should be considered while planning street trees in high latitude cities, where the solar access in winter is limited. The results were used for parameterisation of SOLWEIG model for a better estimation of the mean radiant temperature (T_mrt). Measured values of transmissivity of solar radiation through both foliated and leafless trees were found to improve the model performance.     

Hydrogeologic studies for nuclear-waste disposal in Sweden

Safety Report 1997 (SR 97) of the Swedish Nuclear Fuel and Waste Management Company is a comprehensive performance assessment of three hypothetical radioactive waste repositories in Sweden. It includes hydrogeologic studies (data compilation, parameter synthesis, and groundwater flow modeling) to determine groundwater flow and the associated uncertainties for the three sites. This report reviews and compares the hydrogeologic characterization programs, the site characteristics, and the groundwater flow models used in the SR 97 performance assessment. Although differences in site-characterization programs tend to mask differences in site characteristics, the sites do have notable differences that affect the results of the performance assessment. The effects of model uncertainties evaluated by the variant cases appear to be smaller than the variability of results for the base case (best estimate of site conditions) of each site. Electronic Publication