Parallel distributed computing using Python

This work presents two software components aimed to relieve the costs of accessing high-performance parallel computing resources within a Python programming environment: MPI for Python and PETSc for Python.MPI for Python is a general-purpose Python package that provides bindings for the Message Passing Interface (MPI) standard using any back-end MPI implementation. Its facilities allow parallel Python programs to easily exploit multiple processors using the message passing paradigm. PETSc for Python provides access to the Portable, Extensible Toolkit for Scientific Computation (PETSc) libraries. Its facilities allow sequential and parallel Python applications to exploit state of the art algorithms and data structures readily available in PETSc for the solution of large-scale problems in science and engineering.MPI for Python and PETSc for Python are fully integrated to PETSc-FEM, an MPI and PETSc based parallel, multiphysics, finite elements code developed at CIMEC laboratory. This software infrastructure supports research activities related to simulation of fluid flows with applications ranging from the design of microfluidic devices for biochemical analysis to modeling of large-scale stream/aquifer interactions.     

Trace elements in Holocene sediments of the southern Doñana National Park (SW Spain): historical pollution and applications

The multidisciplinary analysis of core sediments from Doñana National Park, south Spain, permits to delimitate both the paleoenvironmental changes and the geochemical evolution of this area during the Holocene. In a first phase (10–6.5 kyr cal), this area was occupied by freshwater/brackish marshes with periodical alternation of dry periods and humid intervals. In a second phase, these marshes were inundated during the Flandrian transgression (~6.5 kyr cal), with the deposition of bioclastic sands. The third phase (6.5–3.6 kyr cal) is characterized by the transition to an old lagoon, with unpolluted, bottom sediments. The geochemical concentrations of these clayey sediments can be used as a geochemical background for present-day and future environmental evaluations of this area. In the following 600 years approximately, two tsunamis caused the partial infilling of this area with bioclastic, marine sediments. In the interval comprised between these two tsunamis, this lagoon was polluted with heavy metals derived from historical mining activities. This environmental contamination represents one of the oldest evidences of mining pollution in the world (>3 kyr cal BP).     

Land use and disturbance effects on the dynamics of natural ecosystems of the Monte Desert: Implications for their management

The complex interactions between human activity and natural processes determine non-linear dynamics in ecosystems that can difficult their management. Human settlements in arid lands contribute to the modification of disturbance regimes, including the introduction of new disturbances and the elimination of others. In consequence, they can alter the functional mechanisms that allow systems to overcome limiting factors, leading to desertification. In this revision, we evaluated the effects of the changes on disturbance regimes produced by the different forms of land transformation on the structure and function of ecosystems of the Monte Biogeographical Province, in Argentinean arid west. Two approaches were used: the analysis of land use history and the analysis of the effects of the main disturbances on the dynamics of different communities. We concluded that throughout the history of the Monte Desert, the joint action of natural and anthropic agents has resulted in complex dynamics that lead most area of the Monte to a moderate to severe status of desertification. The modification of the disturbance regime had strong consequences for several aspects of the dynamics of communities, such as species composition and diversity, water dynamics, soil conditions, trophic structure and productivity of Monte Desert ecosystems. However, disturbance regimes could be managed to promote favorable transitions in ecosystems and, therefore, could be a tool for optimizing productivity of agro-ecosystems, and recovering and conserving natural ecosystems.     

Characterization of high molecular weight biomarkers in crude oils

High-temperature gas chromatography (HTGC) has enhanced our ability to characterize hydrocarbons extending to C₁₂₀ in crude oils. As a result, hydrocarbons in waxes (> C₂₀) have been observed to vary significantly between crude oils, even those presumed to originate from the same source. Prior to this development, microcrystalline waxes containing hydrocarbons above C₄₀ were not characterized on a molecular level due to the analytical limitations of conventional gas chromatography. Routine screenings of high pour-point crude oils by high-temperature gas chromatography has revealed that high molecular weight hydrocarbons (> C₄₀) are very common in most oils and may represent 2% of the crude oil. Precise structures, origins, and significance of these high molecular weight compounds remain elusive. As a preliminary step to expand our knowledge of these compounds their general molecular structures and formulas have been investigated in this study. Initial results suggest that the major high molecular weight compounds include a homologous series of n-alkanes, methylbranched alkanes, alkylcyclopentanes, alkylcyclohexanes, alkylbenzenes and alkylcycloalkanes.     

Star formation properties of Universidad Complutense de Madrid survey galaxies

We present new near-infrared J and K imaging data for 67 galaxies from the Universidad Complutense de Madrid (UCM) survey used in the determination of the SFR density of the local Universe by Gallego et al. This is a sample of local star-forming galaxies with redshift lower than 0.045, and they constitute a representative subsample of the galaxies in the complete UCM survey. From the new data, complemented with our own Gunn- r images and long-slit optical spectroscopy, we have measured integrated K -band luminosities, r − J and J − K colours, and H α luminosities and equivalent widths. Using a maximum likelihood estimator and a complete set of evolutionary synthesis models, these observations allow us to estimate the strength of the current (or most recent) burst of star formation, its age, the star formation rate and the total stellar mass of the galaxies. An average galaxy in the sample has a stellar mass of 5×10¹⁰ M_⊙ and is undergoing (or has recently completed) a burst of star formation involving about 2 per cent of its total stellar mass. We identify two separate classes of star-forming galaxies in the UCM sample: low-luminosity, high-excitation galaxies (H  ii like ) and relatively luminous spiral galaxies (starburst disc- like ). The former show higher specific star formation rates (SFRs per unit mass) and burst strengths, and lower stellar masses than the latter. With regard to their specific star formation rates, the UCM galaxies are intermediate objects between normal quiescent spirals and the most extreme H  ii galaxies.     

Quiet-time periods observed by EPHIN/SOHO during the minimum of the 22nd solar cycle

An analysis of the hydrogen and helium isotopic composition from EPHIN data, during the quiet-time period from January 1 to June 1, 1996, is presented. An isotopic discrimination and background rejection have been applied and relationships between the abundances of ²H/¹H, ³He/⁴He, and ⁴He/¹H have been calculated. The energy spectra in the 4–50 MeV nucl^–1 range have been obtained and the contribution of the different spectral components have been analysed in this energy range. We conclude that the main contribution to the ⁴He spectrum is of anomalous origin, while the proton and ³He spectra have contributions mainly from particles of solar origin at low energies and from the galactic cosmic radiation modulated by the heliosphere at high energies. The deuterium spectrum is mainly of galactic origin.     

Geomorphological and sedimentological features in Quaternary fluvial systems affected by solution-induced subsidence (Ebro Basin, NE-Spain)

The Quaternary evolution and the morpho-sedimentary features of some of the most important rivers in Spain (Ebro and Tagus rivers among others) have been controlled by subsidence due to alluvial karstification of the evaporitic bedrock. The subsidence mechanism may range from catastrophic collapse to slow sagging of the alluvium by passive bending. In the Ebro Basin, the mechanisms and processes involved in karstic subsidence were studied through the analysis of present-day closed depressions as well as through old subsidence depressions (palaeocollapses and solution-induced basins) and associated deformations recorded in the Quaternary alluvial sediments. The Gállego–Ebro river system is presented as a case study of channel adjustments and geomorphic and sedimentary evolution of fluvial systems in dissolution-induced subsidence areas. In this fluvial system, evaporite dissolution during particular Quaternary time intervals (namely early and middle Pleistocene) have lead to the development of a solution-induced basin, approximately 30 km-long by 8 km-wide, filled by Quaternary deposits with a total thickness in excess of 190 m. The main river response to balance the subsidence in the alluvial plain was aggradation in the central reach of the subsiding area, and degradation both in the upstream reach and in the valley sides where alluvial fans and covered pediments may prograde over the fluvial sediments. The main sinking areas are recognized in the sedimentary record by anomalous thickenings in the alluvial deposits and fine-grained sediments deposited in backswamp and ponded areas.     

Polycyclic aromatic hydrocarbons and their molecular diagnostic ratios in urban atmospheric respirable particulate matter

Atmospheric concentrations of polycyclic aromatic hydrocarbons (PAHs) in Santiago de Chile city were evaluated to study particulate PAHs profiles during cold and spring weather periods. Urban atmospheric particulate matter PM10 was collected using High Volume PM10 samplers. Fifteen samples of 24 h during austral winter and 20 samples of 24 h during spring, 2000 were collected at two sampling sites (North–East and Central areas of the city) whose characteristics were representative of the prevailing conditions. Seventeen PAHs were quantified and total PAHs concentration ranged from 1.39 to 59.98 ng m⁻³, with a seasonal variation (winter vs. spring ratio) from 0.5 to 12.6 ng m⁻³. Molecular diagnostic ratios were used to characterize and identify PAHs emission sources such as combustion and biogenic emissions. Results showed that the major sources of respirable organic aerosol PM10 in Santiago are mobile and stationary ones.