Numerical simulation of tidal current and erosion and sedimentation in the Yangshan deep-water harbor of Shanghai

Yangshan near-shore sea area is the multi-island and multi-channel area with strong flow velocity and high suspended sediment concentration. Based on the characteristics of tidal currents, waves, and sediment in the Yangshan area, a two-dimensional numerical model of tidal currents, sediment transport, and sea bed deformation is developed. In the model, the effects of tidal currents and wind waves on sediment transport are considered. According to characteristics of the study area, unstructured grids are applied to fit the boundaries of the near-shore sea area. The results show that the calculated values are in good agreement with the measured data. The field of tidal currents, suspended sediment concentrations, and the deformation of the seabed can be successfully simulated.     

Benthic input rates predict seagrass (Posidonia oceanica) fish farm-induced decline

Fish farms represent a growing source of anthropogenic disturbance to benthic communities, and efficient predictors of such impacts are urgently needed. We explored the effects of fish farm benthic organic and nutrient inputs on the population dynamics of a key seagrass species (Posidonia oceanica) in four Mediterranean deep meadows adjacent to sea bream and sea bass farms. We performed two annual plant censuses on permanent plots at increasing distance from farms and measured benthic sedimentation rates around plots. High shoot mortality rates were recorded near the cages, up to 20 times greater than at control sites. Recruitment rates increased in variability but could not compensate mortality, leading to rapid seagrass decline within the first 100 m from cages. Seagrass mortality increased with total sedimentation rates (K=0.55, p<0.0002), and with organic matter (K=0.50, p=0.001), total nitrogen (K=0.46, p=0.002) and total phosphorus (K=0.56, p<3.10(-5)) inputs. P. oceanica decline accelerated above a phosphorus loading threshold of 50mg m(-2)day(-1). Phosphorus benthic sedimentation rate seems a powerful predictor of seagrass mortality from fish farming. Coupling direct measurements of benthic sedimentation rates with dynamics of key benthic species is proposed as an efficient strategy to predict fish farm impacts to benthic communities.     

The effect of deformation on the TitaniQ geothermobarometer: an experimental study

We performed high strain (up to 47 %) axial compression experiments on natural quartz single crystals with added rutile powder (TiO₂) and ~0.2 wt% H₂O to investigate the effects of deformation on the titanium-in-quartz (TitaniQ) geothermobarometer. One of the objectives was to study the relationships between different deformation mechanisms and incorporation of Ti into recrystallized quartz grains. Experiments were performed in a Griggs-type solid-medium deformation apparatus at confining pressures of 1.0–1.5 GPa and temperatures of 800–1,000 °C, at constant strain rates of 1 × 10^?6 or 1 × 10^?7 s^?1. Mobility of Ti in the fluid phase and saturation of rutile at grain boundaries during the deformation experiments are indicated by precipitation of secondary rutile in cracks and along the grain boundaries of newly recrystallized quartz grains. Microstructural analysis by light and scanning electron microscopy (the latter including electron backscatter diffraction mapping of grain misorientations) shows that the strongly deformed quartz single crystals contain a wide variety of deformation microstructures and shows evidence for subgrain rotation (SGR) and grain boundary migration recrystallization (GBMR). In addition, substantial grain growth occurred in annealing experiments after deformation. The GBMR and grain growth are evidence of moving grain boundaries, a microstructure favored by high temperatures. Electron microprobe analysis shows no significant increase in Ti content in recrystallized quartz grains formed by SGR or by GBMR, nor in grains grown by annealing. This result indicates that neither SGR nor moving grain boundaries during GBMR and grain growth are adequate processes to facilitate re-equilibration of the Ti content in experimentally deformed quartz crystals at the investigated conditions. More generally, our results suggest that exchange of Ti in quartz at low H₂O contents (which may be realistic for natural deformation conditions) is still not fully understood. Thus, the application of the TitaniQ geothermobarometer to deformed metamorphic rocks at low fluid contents may not be as straightforward as previously thought and requires further research.     

Extracts of the seaweed Bifurcaria bifurcata display antifungal activity against human dermatophyte fungi

Bifurcaria bifurcata is a seaweed of the Order Fucales(Ochrophyta, Phaeophyceae) that can be found all year round along the Portuguese Atlantic shore. Although it is considered edible in some countries,its biotechnological potential has not yet been assessed in detail and here we report its antimicrobial potential against human dermatophyte fungi. Three samples were harvested from Baleal Island(Peniche, Portugal)harvested in winter(BbPe); from Aguda Beach(Arcozelo, Vila Nova de Gaia, Portugal), harvested in autumn(BbAg) and a sample obtained by culturing the Aguda sample under laboratory conditions(BbLC).A broth macrodilution assay was applied to determine the MIC(minimum inhibitory concentration) and MLC(minimum lethal concentration) of the B. bifurcata extracts. Results show that the BbPe MeOH extracts were the most effective and had higher antifungal activity against all the tested dermatophyte strains than the BbLC and BaAg extracts [Epidermophyton floccosum FF9(100-200 μg/mL MIC; 200 μg/mL MLC), Microsporum canis FF1(400 μg/mL MIC; 400 μg/mL MLC), Trichophyton mentagrophytes FF7(100 μg/mL MIC; 800 μg/mL MLC), M. gypseum CECT 2908(800 μg/mL MIC; 800 μg/mL MLC), T.mentagrophytes var. interdigitale CECT 2958(800 μg/mL MIC; 800 μg/mL MLC), T. rubrum CECT 2794(200 μg/mL MIC; 400 μg/mL MLC)]. In fact, only E. floccosum FF9 was sensitive to BbAg and BbLC MeOH extracts. To our knowledge, this is the first report of antifungal activity of B. bifurcata against human dermatophyte fungi.     

Recent environmental changes on Banks Island (N.W.T., Canadian Arctic) quantified using fossil diatom assemblages

Banks Island (N.W.T.) has become a focal point for climate change studies in the Canadian Arctic. However, long-term climatic and environmental data are very sparse from this large island, as they are for the entire southwestern region of the Canadian Arctic Archipelago. In this paleolimnological study, diatom species assemblage shifts documented in cores collected from a pond and a lake on Banks Island were interpreted to represent a response to climate warming commencing in the nineteenth century. We found that, although the timing and overall nature of the species changes in the two cores were consistent, the signal was muted in the deeper site likely as a result of differences in ice cover extent and duration between lakes and ponds. A high-resolution study was also conducted from a second pond, at sub-decadal resolution, that only spanned the last ∼60 years. In the deeper lake site, Fragilaria construens and F. pinnata dominated the assemblages, similar to those noted in other high Arctic regions where lakes are characterized by extended ice cover. In contrast, Denticula kuetzingii dominated the shallower ponds and, in the case of the pond core representing the longer time period, this taxon increased in the post-1850 sediments, likely coincident with climate warming. In all cores, diatom assemblages became more diverse and Achnanthes species (particularly A. minutissima) increased from ∼1850 to the present, similar to changes documented in other Arctic regions. Beta diversity values calculated for the diatom species changes indicated that assemblage shifts in the Banks Island cores were of similar magnitude to those recorded in other Arctic regions with high species turnover, such as Ellesmere Island. A diatom-based Total Nitrogen (TN) transfer function previously developed for Banks Island was applied to the three ²¹⁰Pb dated cores as an exploratory tool for inferring past changes in nitrogen concentrations. In both the lake and pond cores, diatom-inferred TN concentrations tended to increase in the more recent sediments, as may be expected with warming; however these trends were not very distinct.     

Experimental soft‐sediment deformation caused by fluidization and intrusive ice melt in sand

Identifying the driving mechanisms of soft‐sediment deformation in the geological record is the subject of debate. Thawing of ice‐rich clayey silt above permafrost was proved experimentally to be among the processes capable of triggering deformation. However, previous work has failed so far to reproduce similar structures in sand. This study investigates fluidization and intrusive ice formation from soil models in the laboratory. Experimental conditions reproduce the growth of ice‐cored mounds caused by pore water pressure increase during freeze‐back of sand in a permafrost context. Excess pore water pressure causes hydraulic fracturing and the development of water lenses beneath the freezing front. Later freezing of the water lenses generates intrusive ice. The main structures consist of sand dykes and sills formed when the increase in pore water pressure exceeds a critical threshold, and soft‐sediment deformations induced by subsidence during ice melt. The combination of processes has resulted in diapir‐like structures. The experimental structures are similar to those described in Pleistocene sites from France. These processes constitute a credible alternative to the seismic hypothesis evoked to explain soft‐sediment deformation structures in other European regions subjected to Pleistocene cold climates.     

Physical and chemical control of the phytoplankton of Ahe lagoon, French Polynesia

The environmental characteristics of Ahe deep lagoon (Tuamotu Archipelago, French Polynesia) were studied over 3 years with the aim of explaining the spatial and temporal variability of the natural food available for pearl oysters with a special focus on phytoplankton biomass and global photosynthesis/respiration ratio of the lagoon. Chlorophyll averaged 0.34±0.01 μg L(-1) and our findings did not confirm increased phytoplankton biomass in deep lagoonal waters. Phytoplankton production appears to be limited firstly by nitrogen and respiratory processes overpass photosynthetic processes at least in the north-eastern edge of the atoll. Grazing by pearl oysters in culture seems to decrease the POC concentration but not the phytoplankton biomass. Oysters graze mainly on non chlorophyllian particles.     

Pearl oysters Pinctada margaritifera grazing on natural plankton in Ahe atoll lagoon (Tuamotu archipelago, French Polynesia)

In atoll lagoons of French Polynesia, growth and reproduction of pearl oysters are mainly driven by plankton concentration. However, the actual diet of black-lip pearl oysters Pinctada margaritifera in these lagoons is poorly known. To fill this gap, we used the flow through chamber method to measure clearance rates of P. margaritifera in Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia). We found: (i) that pearl oysters cleared plankton at a rate that was positively related to plankton biovolume, (ii) that nanoflagellates were the main source of carbon for the pearl oysters, and (iii) that the quantity and origin of carbon filtrated by pearl oysters was highly dependent on the concentration and composition of plankton. These results provide essential elements for the comprehension of growth and reproduction variability of pearl oysters in atoll lagoons of French Polynesia.     

Seasonal and Spatial Variability of Microparticles in Snowpits on the Tibetan Plateau, China

The work presents microparticle concentrations in snowpits from the East Rongbuk Glacier on Mt. Qomolangma (Everest) (ER) (28.02°N, 86.96°E, 6536 m a.s.l.), the Zhadang Glacier on Mt. Nyainqentanglha (NQ) (30.47°N, 90.65°E, 5800m a.s.l.), and the Guoqu Glacier on Mt. Geladaindong (GL) (33.95°N, 91.28°E, 5823m a.s.l.) over the Tibetan Plateau (TP). Variations of microparticle and major ions (e.g. Mg2+, Ca2+) concentrations in snowpits show that the values of the microparticles and ions in the non-monsoon seasons are much higher than those in the monsoon seasons. Annual flux of microparticle deposition at ER is lower than those at NQ and GL, which could be attributed to the long distance away from the possible dust source regions as well as the elevation for ER higher than the others. Compared with other remote areas, microparticle concentrations in the southern TP are much lower than those in the northern TP, but still much higher than those in Greenland and Antarctica. The seasonal and spatial microparticle variations are clearly related to the variations of atmospheric circulation according to the air mass 5-day backward trajectory analyses of HYSPLIT Model. Resultingly, the high microparticle values in snow are mainly attributed to the westerlies and the strong dust storm outbreaks on the TP, while the monsoon circulation brings great amount of precipitation from the Indian Ocean, thus reducing in the aerosol concentrations.